mRNA_M-pyrifera_M_contig122212.4580.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122212.4580.1
Unique NamemRNA_M-pyrifera_M_contig122212.4580.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Match: A0A351MFN3_9GAMM (AAA_31 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A351MFN3_9GAMM)

HSP 1 Score: 130 bits (326), Expect = 5.190e-34
Identity = 63/118 (53.39%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    7 DVMLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDTSPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLILNKVKQSARKSYDYYGY 360
            DV+  T++P L ++PAG +++  TE LAS  M+ +T ELA RY DR+VLFD  P+LAT+ A ALAP +GQ  LVVEA +T H+TL  AL +L+   +TGLILNKVK++    Y YYGY
Sbjct:  220 DVICNTSVPKLSLVPAGTERTTITERLASEAMRRLTLELAQRYADRIVLFDCPPVLATTGATALAPYIGQIALVVEAGRTTHDTLRHALQMLEHVRITGLILNKVKETMADGYQYYGY 337          
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Match: A0A6P2A2F5_9GAMM (Tyrosine-protein kinase family protein n=1 Tax=Thioalkalivibrio sp. TaxID=2093813 RepID=A0A6P2A2F5_9GAMM)

HSP 1 Score: 119 bits (297), Expect = 4.000e-30
Identity = 66/124 (53.23%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 ISDVMLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDTSPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLILNKVKQSARKSYDYYGYYTKG 372
            ++DVMLRTNIP L +IP GQ  +  TELLAS  M  +  EL TRY DRLV+FD+ PILATS A  LA  VGQ V VVEA+ T    +  AL L+D +   GL+LNK +++A  SY  YG Y  G
Sbjct:  175 VADVMLRTNIPKLRLIPMGQFHAHSTELLASDNMSRLVRELETRYPDRLVIFDSPPILATSDAAVLAGLVGQVVFVVEASHTPQGYVKDALALIDSSKPIGLVLNKARKAAGSSYYGYGSYGYG 298          
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Match: A0A837X4A4_NITER (Capsular polysaccharide biosynthesis protein n=1 Tax=Nitrosomonas europaea TaxID=915 RepID=A0A837X4A4_NITER)

HSP 1 Score: 116 bits (290), Expect = 4.670e-30
Identity = 65/121 (53.72%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    1 ISDVMLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDTSPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLILNKVKQSARKSYDYYGYY 363
            ISDVM++TNI  L +IPAG+  +  TELLAS  M SI  ELA RY DR+V+FD+ P+L TS A  LA Q+GQ VLVVEA +T  +T+  AL  ++   V  LI NK K  A  S  YYGYY
Sbjct:   88 ISDVMMKTNIKKLTLIPAGRRHTHATELLASQSMHSILVELAQRYHDRVVIFDSPPLLLTSEARVLASQMGQIVLVVEAERTTQQTVKEALQQIEACDVVNLIYNKAK--AHGSTGYYGYY 206          
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Match: UPI001D044843 (XrtA-associated tyrosine autokinase n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001D044843)

HSP 1 Score: 117 bits (292), Expect = 5.440e-30
Identity = 64/129 (49.61%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 ISDVMLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDTSPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLILNKVKQSARKS-----YDYYGYYTKG 372
            I +VMLRTNI  L +IPAGQ  +  TELLAS RM +I +EL+ RY DR+++FD+ PILAT+ ++ L   +GQ V VV+A +TK E++S+AL+L+ E P  GLILN+      K+     YD Y YY  G
Sbjct:  101 IGEVMLRTNIEKLSLIPAGQLDNRCTELLASARMDAIIKELSNRYEDRILIFDSPPILATTESVVLTAHMGQVVFVVQAGRTKRESVSSALELIGERPNLGLILNRTTGGFGKTGFGSYYDAYYYYGYG 229          
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Match: A0A837X3A6_NITER (Capsular polysaccharide biosynthesis protein n=3 Tax=Nitrosomonas TaxID=914 RepID=A0A837X3A6_NITER)

HSP 1 Score: 116 bits (290), Expect = 1.400e-29
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 ISDVMLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDTSPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLILNKVKQSARKSYDYYGYY 363
            ISDVM++TNI  L +IPAG+  +  TELLAS  M SI  ELA RY DR+V+FD+ P+L TS A  LA Q+GQ VLVVEA +T  +T+  AL  ++   V  LI NK +  A  S +YYGYY
Sbjct:  133 ISDVMMKTNIKKLTLIPAGRRHTHATELLASQSMHSILVELAQRYHDRVVIFDSPPLLLTSEARVLASQMGQIVLVVEAERTTQQTVKEALQQIEACDVVNLIYNKAR--AHGSTEYYGYY 251          
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Match: UPI000FDDD012 (XrtA-associated tyrosine autokinase n=1 Tax=Piscinibacter defluvii TaxID=1796922 RepID=UPI000FDDD012)

HSP 1 Score: 117 bits (293), Expect = 1.690e-29
Identity = 59/122 (48.36%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 ISDVMLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDTSPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLILNKVKQSARKSYDYYGYYT 366
            +SDV+LRTNIP L ++PAG+     TELLAS  M+ + +EL+ RY DR++LFD+ P+L ++ +  LA ++GQ +LVVEA+KT  +TL  AL  L++ P   L+LNK+ +S   SY  YGYY 
Sbjct:  185 VSDVLLRTNIPKLSLLPAGRQHGRATELLASEAMRRLLDELSNRYADRILLFDSPPLLPSTESRVLATRMGQVLLVVEADKTSQKTLEQALATLEQCPDVSLLLNKISRSEVGSY--YGYYA 304          
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Match: A0A7C5XN26_9GAMM (Tyrosine-protein kinase family protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5XN26_9GAMM)

HSP 1 Score: 115 bits (288), Expect = 4.450e-29
Identity = 61/120 (50.83%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 ISDVMLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDTSPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLILNKVKQSARKSYDYYGY 360
            +S++++RTN+P L VIPAG+     TELLAS  M+++T+ELA RY DR+VLFDT P+LA S A  L   VGQ V+VVEA +T    +  AL L+D +   GL+LNK  +  R  Y YYGY
Sbjct:  151 LSEIIVRTNVPKLRVIPAGRTYPNSTELLASQAMRALTQELAERYPDRVVLFDTPPLLAASQASILTYLVGQVVVVVEAGRTVQHVVKEALGLVDSSKAVGLVLNKSHERTRGDY-YYGY 269          
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Match: A0A832N4L8_9GAMM (Polysaccharide biosynthesis tyrosine autokinase n=1 Tax=Candidatus Tenderia electrophaga TaxID=1748243 RepID=A0A832N4L8_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 1.280e-28
Identity = 58/121 (47.93%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    1 ISDVMLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDTSPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLILNKVKQSARKSYDYYGYY 363
            +SD++L+TN+PNL V+PAG+     TELL+S  M+ +  EL+ RY DR+V+ D+ P+LAT+ A  LA  VGQ V+VVE+ KT  + +  AL LLD++ + GL+LNK +       DYYGYY
Sbjct:  164 LSDLLLKTNVPNLRVLPAGRSHIHSTELLSSDAMRQLVTELSQRYSDRVVIIDSPPLLATTEAAVLASLVGQVVMVVESEKTGRQEVKDALALLDQSKLIGLVLNKARPVFTS--DYYGYY 282          
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Match: A0A4R3Y8D2_9PROT (Receptor protein-tyrosine kinase n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3Y8D2_9PROT)

HSP 1 Score: 114 bits (286), Expect = 1.690e-28
Identity = 57/121 (47.11%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 ISDVMLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDTSPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLILNKVKQSARKSYDYYGYY 363
            ++DV++RTNI  L ++PAGQ     TELLAS  M  + E++  RY DR+++FD+ P+L+TS A ALA Q+GQ V+VVEA KT  + +  AL  ++   V G++LNK   +A    DYYGYY
Sbjct:  184 LADVLIRTNIEKLTILPAGQTYRHATELLASEAMDKLLEDMGNRYPDRIIIFDSPPLLSTSEASALATQMGQIVMVVEAEKTPEDAVKEALSRIESCDVIGMLLNKT--AAITGSDYYGYY 302          
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Match: A0A6P2A4M0_9GAMM (Tyrosine-protein kinase family protein n=1 Tax=Thioalkalivibrio sp. TaxID=2093813 RepID=A0A6P2A4M0_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 3.750e-28
Identity = 63/121 (52.07%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    1 ISDVMLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDTSPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLILNKVKQSARKSYDYYGYY 363
            + DVMLRTN+P L VIP G       EL+AS  M+ +T+ELATRY DR+V+FD  PILATS A+ LA  VGQ V VVEA +T    +  AL LLD     GL+LNK      +SY  +GYY
Sbjct:  183 VGDVMLRTNVPKLRVIPMGGYHPHANELVASETMRQLTQELATRYPDRMVIFDAPPILATSEAVVLAGLVGQLVFVVEAERTLQSNVQDALGLLDTAKPIGLVLNK-----SRSYSGHGYY 298          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122212.4580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351MFN3_9GAMM5.190e-3453.39AAA_31 domain-containing protein n=1 Tax=Gammaprot... [more]
A0A6P2A2F5_9GAMM4.000e-3053.23Tyrosine-protein kinase family protein n=1 Tax=Thi... [more]
A0A837X4A4_NITER4.670e-3053.72Capsular polysaccharide biosynthesis protein n=1 T... [more]
UPI001D0448435.440e-3049.61XrtA-associated tyrosine autokinase n=1 Tax=Pelagi... [more]
A0A837X3A6_NITER1.400e-2952.89Capsular polysaccharide biosynthesis protein n=3 T... [more]
UPI000FDDD0121.690e-2948.36XrtA-associated tyrosine autokinase n=1 Tax=Piscin... [more]
A0A7C5XN26_9GAMM4.450e-2950.83Tyrosine-protein kinase family protein n=1 Tax=Chr... [more]
A0A832N4L8_9GAMM1.280e-2847.93Polysaccharide biosynthesis tyrosine autokinase n=... [more]
A0A4R3Y8D2_9PROT1.690e-2847.11Receptor protein-tyrosine kinase n=1 Tax=Sulfurirh... [more]
A0A6P2A4M0_9GAMM3.750e-2852.07Tyrosine-protein kinase family protein n=1 Tax=Thi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122212contigM-pyrifera_M_contig122212:146..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score107.8
Seed ortholog evalue3.6e-21
Seed eggNOG ortholog228410.NE1803
Preferred namewzc2
KEGG koko:K08252
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NUBPL iron-transfer P-loop NTPase
EggNOG OGs1MVI9@1224,2VJEB@28216,372ER@32003,COG0489@1,COG0489@2
EC2.7.10.1
COG Functional cat.D
Best tax levelNitrosomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size384
Cds size372
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.1106725-CDS-M-pyrifera_M_contig122212:145..5171622815742.1106725-CDS-M-pyrifera_M_contig122212:145..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122212 146..517 -
1692277547.952534-CDS-M-pyrifera_M_contig122212:145..5171692277547.952534-CDS-M-pyrifera_M_contig122212:145..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122212 146..517 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.1262815-UTR-M-pyrifera_M_contig122212:517..5291622815742.1262815-UTR-M-pyrifera_M_contig122212:517..529Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122212 518..529 -
1692277547.969939-UTR-M-pyrifera_M_contig122212:517..5291692277547.969939-UTR-M-pyrifera_M_contig122212:517..529Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122212 518..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122212.4580.1prot_M-pyrifera_M_contig122212.4580.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122212 146..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122212.4580.1

>prot_M-pyrifera_M_contig122212.4580.1 ID=prot_M-pyrifera_M_contig122212.4580.1|Name=mRNA_M-pyrifera_M_contig122212.4580.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
MLRTNIPNLVVIPAGQDQSARTELLASTRMKSITEELATRYGDRLVLFDT
SPILATSTALALAPQVGQFVLVVEANKTKHETLSAALDLLDETPVTGLIL
NKVKQSARKSYDYYGYYTKGDGA*
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mRNA from alignment at M-pyrifera_M_contig122212:146..529-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122212.4580.1 ID=mRNA_M-pyrifera_M_contig122212.4580.1|Name=mRNA_M-pyrifera_M_contig122212.4580.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig122212:146..529- (Macrocystis pyrifera P11B4 male)
ATCAGCGACGTCATGCTACGGACGAATATTCCAAACCTCGTGGTCATTCC CGCCGGTCAGGATCAATCGGCGCGCACGGAGCTGCTCGCAAGCACGCGGA TGAAGTCGATCACGGAAGAGCTGGCCACCCGCTACGGCGACCGGCTCGTC CTGTTCGACACCTCGCCGATCCTCGCCACGAGCACGGCCTTGGCACTTGC ACCCCAGGTGGGTCAGTTCGTGCTCGTCGTCGAGGCGAACAAGACGAAGC ATGAGACCTTGAGCGCAGCTCTCGATCTCCTCGACGAGACACCGGTCACC GGACTCATACTGAATAAGGTGAAGCAGTCGGCGCGGAAATCCTACGATTA TTACGGTTACTACACGAAAGGTGATGGCGCTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122212:146..529-

>mRNA_M-pyrifera_M_contig122212.4580.1 ID=mRNA_M-pyrifera_M_contig122212.4580.1|Name=mRNA_M-pyrifera_M_contig122212.4580.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig122212:146..529- (Macrocystis pyrifera P11B4 male)
ATGCTACGGACGAATATTCCAAACCTCGTGGTCATTCCCGCCGGTCAGGA
TCAATCGGCGCGCACGGAGCTGCTCGCAAGCACGCGGATGAAGTCGATCA
CGGAAGAGCTGGCCACCCGCTACGGCGACCGGCTCGTCCTGTTCGACACC
TCGCCGATCCTCGCCACGAGCACGGCCTTGGCACTTGCACCCCAGGTGGG
TCAGTTCGTGCTCGTCGTCGAGGCGAACAAGACGAAGCATGAGACCTTGA
GCGCAGCTCTCGATCTCCTCGACGAGACACCGGTCACCGGACTCATACTG
AATAAGGTGAAGCAGTCGGCGCGGAAATCCTACGATTATTACGGTTACTA
CACGAAAGGTGATGGCGCTTAAATGCTACGGACGAATATTCCAAACCTCG
TGGTCATTCCCGCCGGTCAGGATCAATCGGCGCGCACGGAGCTGCTCGCA
AGCACGCGGATGAAGTCGATCACGGAAGAGCTGGCCACCCGCTACGGCGA
CCGGCTCGTCCTGTTCGACACCTCGCCGATCCTCGCCACGAGCACGGCCT
TGGCACTTGCACCCCAGGTGGGTCAGTTCGTGCTCGTCGTCGAGGCGAAC
AAGACGAAGCATGAGACCTTGAGCGCAGCTCTCGATCTCCTCGACGAGAC
ACCGGTCACCGGACTCATACTGAATAAGGTGAAGCAGTCGGCGCGGAAAT
CCTACGATTATTACGGTTACTACACGAAAGGTGATGGCGCTTAA
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