mRNA_M-pyrifera_M_contig122210.4579.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122210.4579.1
Unique NamemRNA_M-pyrifera_M_contig122210.4579.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Match: A0A6H5L0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U7_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 2.770e-55
Identity = 102/152 (67.11%), Postives = 126/152 (82.89%), Query Frame = 1
Query:    1 SSRLQRDWSTRQRSREFRELLARRKELPAYQLREKIVRLVRNHRVVVVSGETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASERAERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFVDE 456
            S  L R++  + R+R ++++LA+R +LPAY++R+ IVR VRN +VVVVSGETGCGKTTQ+PQ+VLD M+   EGA ANII TQPRRISAVGVA+R+A+ERAER+GET GYQIRLES+RS  TRLL CTTG+LLRRLQ D  L  VSH+FVDE
Sbjct:  175 SDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKEGASANIIVTQPRRISAVGVAERIAAERAERIGETAGYQIRLESKRSKATRLLLCTTGILLRRLQVDPWLASVSHVFVDE 326          
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Match: D7G1J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J2_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 2.040e-54
Identity = 101/152 (66.45%), Postives = 126/152 (82.89%), Query Frame = 1
Query:    1 SSRLQRDWSTRQRSREFRELLARRKELPAYQLREKIVRLVRNHRVVVVSGETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASERAERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFVDE 456
            S  L +++  + R+R ++++LA+R +LPAY++R+ IVR VRN +VVVVSGETGCGKTTQ+PQ+VLD M+   EGA ANII TQPRRISAVGVA+R+A+ERAER+GET GYQIRLES+RS  TRLL CTTG+LLRRLQ D  L  VSH+FVDE
Sbjct:  245 SDSLFKEFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKEGASANIIVTQPRRISAVGVAERIAAERAERIGETAGYQIRLESKRSKATRLLLCTTGILLRRLQVDPWLASVSHVFVDE 396          
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Match: A0A7S4JSU1_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JSU1_GUITH)

HSP 1 Score: 181 bits (460), Expect = 4.410e-54
Identity = 90/137 (65.69%), Postives = 113/137 (82.48%), Query Frame = 1
Query:   46 EFRELLARRKELPAYQLREKIVRLVRNHRVVVVSGETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASERAERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFVDE 456
            + ++++  RK LP++ +RE+++ ++R+ RVVVVSGETGCGKTTQ+PQ +LDDM  +G G+  NIICTQPRRISA+ VADRVA+ER E LG+TVGYQIRLE +RS RTRLLFCTTGVLLRRL  D  L GVSH+ VDE
Sbjct:   89 DMKKMMEGRKRLPSFSMREEVLSVIRSSRVVVVSGETGCGKTTQVPQFILDDMDAQGLGSQCNIICTQPRRISAISVADRVANERCETLGDTVGYQIRLEVKRSERTRLLFCTTGVLLRRLVVDPELSGVSHVIVDE 225          
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Match: A0A7S0VT50_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VT50_9CRYP)

HSP 1 Score: 179 bits (455), Expect = 1.360e-53
Identity = 89/139 (64.03%), Postives = 116/139 (83.45%), Query Frame = 1
Query:   40 SREFRELLARRKELPAYQLREKIVRLVRNHRVVVVSGETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASERAERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFVDE 456
            +R+F+++   R++LPAY + ++I+  + NH+VVV+SG+TGCGKTTQLPQ+VLD  ++ G G    +ICTQPRRISA+ VADRVASERAE  G+TVGYQIRLE++RS +T+LLFCTTGVLLRRLQ D  L+GV+HIFVDE
Sbjct:   50 NRKFQDMQRVRQKLPAYNMSQEILAAINNHQVVVISGDTGCGKTTQLPQLVLDQFVQAGRGGEVEMICTQPRRISAMSVADRVASERAESTGQTVGYQIRLEAKRSAQTKLLFCTTGVLLRRLQGDCLLKGVTHIFVDE 188          
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Match: A0A7S1HKN7_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HKN7_HEMAN)

HSP 1 Score: 176 bits (446), Expect = 4.680e-52
Identity = 89/139 (64.03%), Postives = 114/139 (82.01%), Query Frame = 1
Query:   40 SREFRELLARRKELPAYQLREKIVRLVRNHRVVVVSGETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASERAERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFVDE 456
            +R+F ++   R++LPAYQ+  +I+  + NH+VVV+SG+TGCGKTTQLPQ+VLD  +  G G    +ICTQPRRISA+ VADRVA+ERAE  G+TVGYQIRLE++RS +T+LLFCTTGVLLRRLQ D  L+GV+HIFVDE
Sbjct:   68 NRKFIDMQKVRQKLPAYQMAGEILHAIDNHQVVVISGDTGCGKTTQLPQLVLDQYVRNGRGGEVEMICTQPRRISAMSVADRVAAERAEATGQTVGYQIRLEAKRSAQTKLLFCTTGVLLRRLQGDCLLKGVTHIFVDE 206          
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Match: L1ISB5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ISB5_GUITC)

HSP 1 Score: 181 bits (460), Expect = 3.340e-51
Identity = 90/137 (65.69%), Postives = 113/137 (82.48%), Query Frame = 1
Query:   46 EFRELLARRKELPAYQLREKIVRLVRNHRVVVVSGETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASERAERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFVDE 456
            + ++++  RK LP++ +RE+++ ++R+ RVVVVSGETGCGKTTQ+PQ +LDDM  +G G+  NIICTQPRRISA+ VADRVA+ER E LG+TVGYQIRLE +RS RTRLLFCTTGVLLRRL  D  L GVSH+ VDE
Sbjct:  177 DMKKMMEGRKRLPSFSMREEVLSVIRSSRVVVVSGETGCGKTTQVPQFILDDMDAQGLGSQCNIICTQPRRISAISVADRVANERCETLGDTVGYQIRLEVKRSERTRLLFCTTGVLLRRLVVDPELSGVSHVIVDE 313          
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Match: D7FS22_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS22_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 3.470e-51
Identity = 92/135 (68.15%), Postives = 113/135 (83.70%), Query Frame = 1
Query:   52 RELLARRKELPAYQLREKIVRLVRNHRVVVVSGETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASERAERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFVDE 456
            R+++A+R+ LPAY  RE IV+ +R+++VVV+SGETGCGKTTQ+PQ VLDD++++GEG   NIICTQPRRISAVGVADRVASER ER+G TVGYQIRL+S+    TRL FCTTG+LLRRL  D  L GVSH+ VDE
Sbjct:  502 RQMMAQRRNLPAYLQREDIVKTIRDNQVVVLSGETGCGKTTQVPQFVLDDLIDQGEGGKCNIICTQPRRISAVGVADRVASERCERVGGTVGYQIRLDSRVGPSTRLTFCTTGILLRRLTSDDTLAGVSHVMVDE 636          
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Match: A0A7S3QBY0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBY0_9STRA)

HSP 1 Score: 183 bits (465), Expect = 8.850e-51
Identity = 88/133 (66.17%), Postives = 115/133 (86.47%), Query Frame = 1
Query:   58 LLARRKELPAYQLREKIVRLVRNHRVVVVSGETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASERAERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFVDE 456
            +L++R+ LPA+Q+ EKIVR + ++++ VVSG+TGCGKTTQ+PQ+VLDDM+ +  G+ ANII TQPRRISA+GV++R+ASER ER+GETVGY IRLE++RS +TRLL CTTG+LLRRLQCD  L  VSH+FVDE
Sbjct:  722 MLSQRQRLPAFQMEEKIVRTIGSNQISVVSGDTGCGKTTQVPQLVLDDMIRQNRGSEANIIVTQPRRISAIGVSERIASERCERVGETVGYSIRLENKRSAKTRLLLCTTGILLRRLQCDPDLASVSHVFVDE 854          
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Match: UPI001FB12E7D (putative ATP-dependent RNA helicase DHX57 isoform X5 n=1 Tax=Homo sapiens TaxID=9606 RepID=UPI001FB12E7D)

HSP 1 Score: 182 bits (462), Expect = 1.320e-50
Identity = 95/141 (67.38%), Postives = 115/141 (81.56%), Query Frame = 1
Query:   34 QRSREFRELLARRKELPAYQLREKIVRLVRNHRVVVVSGETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASERAERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFVDE 456
            Q SR+F+ +L  R+ LPA++ RE I+ L+R H+VVV+SG TGCGKTTQ+PQ +LDD L      +ANIICTQPRRISA+ VA+RVA ERAER+G TVGYQIRLES +S+ TRLL+CTTGVLLRRL+ D ALQGVSHI VDE
Sbjct:  529 QASRQFQSILQERQSLPAWEERETILNLLRKHQVVVISGMTGCGKTTQIPQFILDDSLNGPPEKVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDTALQGVSHIIVDE 669          
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 n=43 Tax=Catarrhini TaxID=9526 RepID=DHX57_HUMAN)

HSP 1 Score: 182 bits (462), Expect = 2.230e-50
Identity = 95/141 (67.38%), Postives = 115/141 (81.56%), Query Frame = 1
Query:   34 QRSREFRELLARRKELPAYQLREKIVRLVRNHRVVVVSGETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASERAERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFVDE 456
            Q SR+F+ +L  R+ LPA++ RE I+ L+R H+VVV+SG TGCGKTTQ+PQ +LDD L      +ANIICTQPRRISA+ VA+RVA ERAER+G TVGYQIRLES +S+ TRLL+CTTGVLLRRL+ D ALQGVSHI VDE
Sbjct:  529 QASRQFQSILQERQSLPAWEERETILNLLRKHQVVVISGMTGCGKTTQIPQFILDDSLNGPPEKVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDTALQGVSHIIVDE 669          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122210.4579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0U7_9PHAE2.770e-5567.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J2_ECTSI2.040e-5466.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4JSU1_GUITH4.410e-5465.69Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S0VT50_9CRYP1.360e-5364.03Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1HKN7_HEMAN4.680e-5264.03Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
L1ISB5_GUITC3.340e-5165.69Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
D7FS22_ECTSI3.470e-5168.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3QBY0_9STRA8.850e-5166.17Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
UPI001FB12E7D1.320e-5067.38putative ATP-dependent RNA helicase DHX57 isoform ... [more]
DHX57_HUMAN2.230e-5067.38Putative ATP-dependent RNA helicase DHX57 n=43 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122210contigM-pyrifera_M_contig122210:73..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue6.5e-49
Seed eggNOG ortholog2880.D7G1J2
KEGG koko:K13026
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0920@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.0654757-CDS-M-pyrifera_M_contig122210:72..5281622815742.0654757-CDS-M-pyrifera_M_contig122210:72..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122210 73..528 +
1692277547.9426758-CDS-M-pyrifera_M_contig122210:72..5281692277547.9426758-CDS-M-pyrifera_M_contig122210:72..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122210 73..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122210.4579.1prot_M-pyrifera_M_contig122210.4579.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122210 73..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122210.4579.1

>prot_M-pyrifera_M_contig122210.4579.1 ID=prot_M-pyrifera_M_contig122210.4579.1|Name=mRNA_M-pyrifera_M_contig122210.4579.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
SSRLQRDWSTRQRSREFRELLARRKELPAYQLREKIVRLVRNHRVVVVSG
ETGCGKTTQLPQIVLDDMLERGEGALANIICTQPRRISAVGVADRVASER
AERLGETVGYQIRLESQRSNRTRLLFCTTGVLLRRLQCDGALQGVSHIFV
DE
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mRNA from alignment at M-pyrifera_M_contig122210:73..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122210.4579.1 ID=mRNA_M-pyrifera_M_contig122210.4579.1|Name=mRNA_M-pyrifera_M_contig122210.4579.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig122210:73..528+ (Macrocystis pyrifera P11B4 male)
AGTTCCAGGTTACAGCGAGATTGGAGTACGAGACAACGCAGTCGTGAGTT TCGCGAGTTGTTGGCACGGCGGAAGGAGTTGCCTGCGTATCAATTGCGGG AAAAGATTGTTCGTTTGGTTAGAAATCATCGTGTAGTTGTTGTCAGCGGT GAAACCGGTTGCGGTAAAACGACACAACTCCCACAGATCGTGTTGGATGA CATGTTAGAACGTGGGGAGGGTGCATTGGCGAACATCATTTGCACGCAGC CACGTCGTATTTCGGCAGTGGGTGTCGCGGATCGTGTTGCGAGTGAGCGT GCGGAGCGTTTGGGCGAGACTGTTGGGTATCAGATTCGACTGGAGTCGCA ACGAAGCAATCGCACTCGTCTGTTGTTTTGCACGACTGGTGTGTTGTTGC GTCGCCTTCAATGTGATGGTGCGTTGCAGGGAGTGAGTCACATTTTCGTT GATGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122210:73..528+

>mRNA_M-pyrifera_M_contig122210.4579.1 ID=mRNA_M-pyrifera_M_contig122210.4579.1|Name=mRNA_M-pyrifera_M_contig122210.4579.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig122210:73..528+ (Macrocystis pyrifera P11B4 male)
AGTTCCAGGTTACAGCGAGATTGGAGTACGAGACAACGCAGTCGTGAGTT
TCGCGAGTTGTTGGCACGGCGGAAGGAGTTGCCTGCGTATCAATTGCGGG
AAAAGATTGTTCGTTTGGTTAGAAATCATCGTGTAGTTGTTGTCAGCGGT
GAAACCGGTTGCGGTAAAACGACACAACTCCCACAGATCGTGTTGGATGA
CATGTTAGAACGTGGGGAGGGTGCATTGGCGAACATCATTTGCACGCAGC
CACGTCGTATTTCGGCAGTGGGTGTCGCGGATCGTGTTGCGAGTGAGCGT
GCGGAGCGTTTGGGCGAGACTGTTGGGTATCAGATTCGACTGGAGTCGCA
ACGAAGCAATCGCACTCGTCTGTTGTTTTGCACGACTGGTGTGTTGTTGC
GTCGCCTTCAATGTGATGGTGCGTTGCAGGGAGTGAGTCACATTTTCGTT
GATGAGAGTTCCAGGTTACAGCGAGATTGGAGTACGAGACAACGCAGTCG
TGAGTTTCGCGAGTTGTTGGCACGGCGGAAGGAGTTGCCTGCGTATCAAT
TGCGGGAAAAGATTGTTCGTTTGGTTAGAAATCATCGTGTAGTTGTTGTC
AGCGGTGAAACCGGTTGCGGTAAAACGACACAACTCCCACAGATCGTGTT
GGATGACATGTTAGAACGTGGGGAGGGTGCATTGGCGAACATCATTTGCA
CGCAGCCACGTCGTATTTCGGCAGTGGGTGTCGCGGATCGTGTTGCGAGT
GAGCGTGCGGAGCGTTTGGGCGAGACTGTTGGGTATCAGATTCGACTGGA
GTCGCAACGAAGCAATCGCACTCGTCTGTTGTTTTGCACGACTGGTGTGT
TGTTGCGTCGCCTTCAATGTGATGGTGCGTTGCAGGGAGTGAGTCACATT
TTCGTTGATGAG
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