mRNA_M-pyrifera_M_contig122166.4566.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig122166.4566.1
Unique Name	mRNA_M-pyrifera_M_contig122166.4566.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Match: A0A8J1U0Z4_OWEFU (Ofus.G09489 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U0Z4_OWEFU)

HSP 1 Score: 65.9 bits (159), Expect = 1.570e-10
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1

Query:   10 WQHASKAMAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVLTFSHIKFH-NTPFCCGAGRACRRIRDNM 258
            ++ AS AM VTS TT+ +FL +  S + AI +FG FAA  +FVNYCSVI+++PTV+   H+ F  N   CC  G+  + + D  
Sbjct:  508 YKRASVAMCVTSLTTMVAFLVSAFSPLLAISSFGAFAATTIFVNYCSVIVFFPTVIVVHHLYFEKNNCLCCHIGKREQLLEDQQ 591

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BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Match: A0A7S1U3D8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3D8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.940e-10
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1

Query:   13 QHASKAMAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVL 177
            QHA KAMA TSA+T  SFLAN TSS PA+YTFG+F A L+  N+CSV + +P V+
Sbjct:  527 QHAGKAMATTSASTAFSFLANATSSFPAVYTFGIFCASLIICNFCSVTIVWPRVV 581

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BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Match: F0YIL3_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIL3_AURAN)

HSP 1 Score: 64.7 bits (156), Expect = 4.010e-10
Identity = 42/94 (44.68%), Postives = 54/94 (57.45%), Query Frame = 1

Query:   10 WQHASKAMAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVLTF--SHIKFHNTPFCCGAGR------ACRRIRDNMHKE 267
            W HA+ AM VTS TTI SFL+N +S    + TFG+FAA LVFVNYC+V  + P+V+    SH+     PF     R      AC +  D+  KE
Sbjct:  459 WHHAAGAMMVTSLTTILSFLSNLSSDFVGVVTFGVFAALLVFVNYCAVTTFMPSVVLVYESHVSKIAYPFGAARARLWAARPACLKPEDDAPKE 552

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BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Match: A0A8J1U366_OWEFU (Ofus.G092541 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U366_OWEFU)

HSP 1 Score: 64.7 bits (156), Expect = 4.010e-10
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 1

Query:   10 WQHASKAMAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVLTFSHIKF-HNTPFCC 219
            ++ A+KAM +TS TT+ +F A+  S + A+ +FG+F+  LVFVNYCSV++++PTV+   H+K+ H T  CC
Sbjct:  571 YKKAAKAMFITSLTTMCAFFASALSPLLAVSSFGLFSGILVFVNYCSVVIFFPTVVAVYHVKYEHWTWPCC 641

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BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Match: UPI001F050467 (LOW QUALITY PROTEIN: protein dispatched homolog 1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F050467)

HSP 1 Score: 61.2 bits (147), Expect = 6.610e-9
Identity = 32/70 (45.71%), Postives = 50/70 (71.43%), Query Frame = 1

Query:   10 WQHASKAMAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVLTFSHIKFHNTPFCC 219
            ++ ++K M VT+ TT+ +FL+N  S + +I +FG+F+A LVFVNY S IL++PTVL + H  F  + +CC
Sbjct:  417 YRKSAKTMFVTTITTVVAFLSNAPSPLLSISSFGIFSALLVFVNYLSTILFFPTVLVYHH--FERSGYCC 484

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BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Match: UPI00106D98E6 (protein dispatched homolog 3-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D98E6)

HSP 1 Score: 59.7 bits (143), Expect = 2.300e-8
Identity = 31/58 (53.45%), Postives = 46/58 (79.31%), Query Frame = 1

Query:    4 FSWQHASKAMAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVL 177
            F ++ A+KAM +TS TTI +FL+N  S + AI +FG+F+A LVFVNYCSV++++P V+
Sbjct:  423 FVYRRAAKAMFITSFTTIVAFLSNAPSPLLAISSFGVFSAVLVFVNYCSVVIFFPAVV 480

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BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Match: UPI00106B208A (protein dispatched homolog 3-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B208A)

HSP 1 Score: 59.7 bits (143), Expect = 2.310e-8
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1

Query:   10 WQHASKAMAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVLTFSHIK 195
            ++ ASKAM +TS TTI +FL+N +S + AI +FG+F+A LV VNY SV+L++PTV+   H  
Sbjct:  434 YRRASKAMFITSFTTIVAFLSNVSSPLLAISSFGLFSAVLVTVNYLSVVLFFPTVVILQHFS 495

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BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Match: A0A7D9I573_PARCT (Dispatched homolog 3-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I573_PARCT)

HSP 1 Score: 58.9 bits (141), Expect = 4.290e-8
Identity = 31/58 (53.45%), Postives = 46/58 (79.31%), Query Frame = 1

Query:    4 FSWQHASKAMAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVL 177
            F ++ A+KAM +TS TT+ +FL+N  S + AI +FG+F+A LVFVNYCSVI+++P V+
Sbjct:  371 FVYRRAAKAMFITSFTTMVAFLSNVPSPLLAISSFGVFSAVLVFVNYCSVIVFFPAVI 428

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BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Match: UPI0009E368F6 (protein dispatched homolog 3-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E368F6)

HSP 1 Score: 58.5 bits (140), Expect = 5.870e-8
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 1

Query:   10 WQHASKAMAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVLTFSHIKFHNTPFCC 219
            + HA+ AM +TS TT+ +F++N  S +  + +FG F+A LVFVNYCSVI+++PTV+    + + N  + C
Sbjct:  378 YSHAAGAMFITSFTTMVAFISNVFSPLLGVSSFGTFSALLVFVNYCSVIIFFPTVVITHELYWKNWKWPC 447

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BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Match: A0A6S7I2A8_PARCT (Dispatched homolog 3-like n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I2A8_PARCT)

HSP 1 Score: 58.2 bits (139), Expect = 7.960e-8
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 1

Query:   10 WQHASKAMAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVLTFSHIKFHNTPFCC 219
            ++ ++K M VTS TTI +FL+N  S + +I +FG+F+A L+FVNY + IL++PTV+ + H       +CC
Sbjct:  426 YRKSAKTMFVTSITTIVAFLSNAPSPLLSISSFGIFSAVLIFVNYLTAILFFPTVVMYHHESRKGRCWCC 495

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig122166.4566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8J1U0Z4_OWEFU	1.570e-10	44.05	Ofus.G09489 protein n=1 Tax=Owenia fusiformis TaxI...	[more]
A0A7S1U3D8_9STRA	2.940e-10	61.82	Hypothetical protein n=2 Tax=Phaeomonas parva TaxI...	[more]
F0YIL3_AURAN	4.010e-10	44.68	Uncharacterized protein n=2 Tax=Aureococcus anopha...	[more]
A0A8J1U366_OWEFU	4.010e-10	46.48	Ofus.G092541 protein n=1 Tax=Owenia fusiformis Tax...	[more]
UPI001F050467	6.610e-9	45.71	LOW QUALITY PROTEIN: protein dispatched homolog 1-...	[more]
UPI00106D98E6	2.300e-8	53.45	protein dispatched homolog 3-like n=1 Tax=Dendrone...	[more]
UPI00106B208A	2.310e-8	51.61	protein dispatched homolog 3-like n=1 Tax=Dendrone...	[more]
A0A7D9I573_PARCT	4.290e-8	53.45	Dispatched homolog 3-like n=2 Tax=Paramuricea clav...	[more]
UPI0009E368F6	5.870e-8	42.86	protein dispatched homolog 3-like n=1 Tax=Orbicell...	[more]
A0A6S7I2A8_PARCT	7.960e-8	42.86	Dispatched homolog 3-like n=3 Tax=Paramuricea clav...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig122166	contig	M-pyrifera_M_contig122166:3..278 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	63.2
Seed ortholog evalue	6.7e-08
Seed eggNOG ortholog	529818.AMSG_05528T0
Preferred name	RTF1
KEGG ko	ko:K02218,ko:K08959,ko:K08960,ko:K13100,ko:K14758,ko:K15178
KEGG Pathway	ko03008,ko04011,ko04068,ko04310,ko04340,ko04341,ko04390,ko04391,ko04392,ko04540,ko04710,ko04711,map03008,map04011,map04068,map04310,map04340,map04341,map04390,map04391,map04392,map04540,map04710,map04711
Hectar predicted targeting category	signal peptide
GOs	GO:0000003,GO:0000018,GO:0000045,GO:0000086,GO:0000122,GO:0000139,GO:0000166,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000407,GO:0000428,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000785,GO:0000793,GO:0000988,GO:0000989,GO:0000993,GO:0001015,GO:0001076,GO:0001098,GO:0001099,GO:0001558,GO:0001654,GO:0001701,GO:0001704,GO:0001706,GO:0001711,GO:0001736,GO:0001737,GO:0001738,GO:0001745,GO:0001824,GO:0001832,GO:0001932,GO:0001933,GO:0001934,GO:0002009,GO:0002097,GO:0002098,GO:0002165,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0004672,GO:0004674,GO:0004713,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005793,GO:0005794,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006325,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006366,GO:0006368,GO:0006396,GO:0006397,GO:0006399,GO:0006400,GO:0006464,GO:0006468,GO:0006479,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006888,GO:0006897,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007030,GO:0007033,GO:0007049,GO:0007051,GO:0007059,GO:0007127,GO:0007129,GO:0007154,GO:0007163,GO:0007164,GO:0007165,GO:0007166,GO:0007219,GO:0007267,GO:0007275,GO:0007346,GO:0007369,GO:0007399,GO:0007423,GO:0007444,GO:0007446,GO:0007472,GO:0007476,GO:0007492,GO:0007552,GO:0007555,GO:0007560,GO:0007562,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008023,GO:0008033,GO:0008062,GO:0008064,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008360,GO:0008544,GO:0008593,GO:0008608,GO:0008757,GO:0009056,GO:0009058,GO:0009059,GO:0009302,GO:0009314,GO:0009410,GO:0009416,GO:0009451,GO:0009628,GO:0009653,GO:0009719,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009913,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010389,GO:0010467,GO:0010468,GO:0010520,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010817,GO:0010845,GO:0010941,GO:0012505,GO:0014070,GO:0015630,GO:0016020,GO:0016043,GO:0016050,GO:0016055,GO:0016070,GO:0016071,GO:0016074,GO:0016192,GO:0016236,GO:0016278,GO:0016279,GO:0016301,GO:0016310,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016591,GO:0016593,GO:0016740,GO:0016741,GO:0016772,GO:0016773,GO:0017076,GO:0018022,GO:0018023,GO:0018024,GO:0018105,GO:0018108,GO:0018130,GO:0018193,GO:0018205,GO:0018209,GO:0018212,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0022008,GO:0022402,GO:0022406,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030100,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0030178,GO:0030182,GO:0030242,GO:0030307,GO:0030424,GO:0030426,GO:0030427,GO:0030431,GO:0030534,GO:0030554,GO:0030832,GO:0030833,GO:0030838,GO:0030855,GO:0030880,GO:0030999,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031090,GO:0031109,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031396,GO:0031399,GO:0031400,GO:0031401,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0031984,GO:0032091,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032271,GO:0032273,GO:0032368,GO:0032386,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032784,GO:0032786,GO:0032879,GO:0032880,GO:0032922,GO:0032956,GO:0032968,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033116,GO:0033157,GO:0033182,GO:0033218,GO:0033267,GO:0033365,GO:0033551,GO:0033554,GO:0034067,GO:0034243,GO:0034248,GO:0034250,GO:0034402,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034968,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035265,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0035327,GO:0035639,GO:0035987,GO:0036094,GO:0036211,GO:0036477,GO:0038083,GO:0040007,GO:0040008,GO:0040020,GO:0042054,GO:0042067,GO:0042176,GO:0042220,GO:0042221,GO:0042254,GO:0042273,GO:0042274,GO:0042277,GO:0042306,GO:0042325,GO:0042326,GO:0042327,GO:0042493,GO:0042752,GO:0042800,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043066,GO:0043067,GO:0043069,GO:0043144,GO:0043167,GO:0043168,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043279,GO:0043393,GO:0043412,GO:0043414,GO:0043628,GO:0043933,GO:0044057,GO:0044060,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0045132,GO:0045143,GO:0045165,GO:0045309,GO:0045475,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045732,GO:0045747,GO:0045787,GO:0045807,GO:0045836,GO:0045862,GO:0045892,GO:0045893,GO:0045911,GO:0045927,GO:0045934,GO:0045935,GO:0045936,GO:0045937,GO:0045943,GO:0045944,GO:0046483,GO:0046777,GO:0046785,GO:0046822,GO:0046883,GO:0046907,GO:0048148,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048259,GO:0048260,GO:0048280,GO:0048284,GO:0048285,GO:0048471,GO:0048511,GO:0048512,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048592,GO:0048598,GO:0048646,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0051046,GO:0051049,GO:0051050,GO:0051052,GO:0051054,GO:0051094,GO:0051098,GO:0051100,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051219,GO:0051223,GO:0051225,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051258,GO:0051276,GO:0051302,GO:0051316,GO:0051321,GO:0051445,GO:0051446,GO:0051455,GO:0051493,GO:0051495,GO:0051568,GO:0051569,GO:0051571,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051960,GO:0051962,GO:0055029,GO:0060070,GO:0060255,GO:0060271,GO:0060284,GO:0060341,GO:0060359,GO:0060429,GO:0060548,GO:0060562,GO:0060627,GO:0060628,GO:0060631,GO:0060795,GO:0060828,GO:0060903,GO:0060968,GO:0061024,GO:0061025,GO:0061136,GO:0061512,GO:0061695,GO:0061919,GO:0061982,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070063,GO:0070192,GO:0070201,GO:0070647,GO:0070727,GO:0070848,GO:0070887,GO:0070911,GO:0070925,GO:0071214,GO:0071310,GO:0071363,GO:0071478,GO:0071482,GO:0071495,GO:0071539,GO:0071684,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0072347,GO:0072698,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090066,GO:0090068,GO:0090087,GO:0090114,GO:0090174,GO:0090262,GO:0090263,GO:0090304,GO:0090596,GO:0097159,GO:0097367,GO:0097435,GO:0097458,GO:0097659,GO:0097711,GO:0098588,GO:0098657,GO:0098687,GO:0098727,GO:0098781,GO:0098791,GO:0098813,GO:0099080,GO:0099081,GO:0099122,GO:0099512,GO:0099513,GO:0104004,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140013,GO:0140056,GO:0140096,GO:0140110,GO:0150034,GO:0198738,GO:1900180,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1901800,GO:1901987,GO:1901990,GO:1902003,GO:1902004,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1902749,GO:1902903,GO:1902905,GO:1902991,GO:1902993,GO:1903046,GO:1903047,GO:1903050,GO:1903052,GO:1903320,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1903508,GO:1903530,GO:1903827,GO:1904338,GO:1904340,GO:1904589,GO:1904956,GO:1904958,GO:1905037,GO:1905114,GO:1905269,GO:1905424,GO:1905426,GO:1905508,GO:1905515,GO:1905952,GO:1990089,GO:1990090,GO:1990234,GO:1990269,GO:1990904,GO:2000026,GO:2000050,GO:2000052,GO:2000058,GO:2000060,GO:2000112,GO:2000113,GO:2000241,GO:2000243,GO:2000369,GO:2000370,GO:2000819,GO:2000831,GO:2001020,GO:2001141,GO:2001159,GO:2001160,GO:2001163,GO:2001165,GO:2001166,GO:2001173,GO:2001207,GO:2001209,GO:2001252
EggNOG free text desc.	RNA polymerase II C-terminal domain phosphoserine binding
EggNOG OGs	COG5296@1,KOG1164@1,KOG1164@2759,KOG2402@2759,KOG3664@1,KOG3664@2759
EC	2.7.11.1
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01001,ko03009,ko03016,ko03021,ko03036,ko03041
Exons	1
Model size	276
Cds size	246
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815741.540045-UTR-M-pyrifera_M_contig122166:2..32	1622815741.540045-UTR-M-pyrifera_M_contig122166:2..32	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig122166 3..32 +
1692277547.7626154-UTR-M-pyrifera_M_contig122166:2..32	1692277547.7626154-UTR-M-pyrifera_M_contig122166:2..32	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig122166 3..32 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815741.5502114-CDS-M-pyrifera_M_contig122166:32..278	1622815741.5502114-CDS-M-pyrifera_M_contig122166:32..278	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig122166 33..278 +
1692277547.7755547-CDS-M-pyrifera_M_contig122166:32..278	1692277547.7755547-CDS-M-pyrifera_M_contig122166:32..278	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig122166 33..278 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig122166.4566.1	prot_M-pyrifera_M_contig122166.4566.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig122166 33..278 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig122166:3..278+
coding sequence from alignment at M-pyrifera_M_contig122166:3..278+

protein sequence of mRNA_M-pyrifera_M_contig122166.4566.1

>prot_M-pyrifera_M_contig122166.4566.1 ID=prot_M-pyrifera_M_contig122166.4566.1|Name=mRNA_M-pyrifera_M_contig122166.4566.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MAVTSATTIASFLANTTSSMPAIYTFGMFAACLVFVNYCSVILYYPTVLT
FSHIKFHNTPFCCGAGRACRRIRDNMHKEEQE

mRNA from alignment at M-pyrifera_M_contig122166:3..278+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig122166.4566.1 ID=mRNA_M-pyrifera_M_contig122166.4566.1|Name=mRNA_M-pyrifera_M_contig122166.4566.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig122166:3..278+ (Macrocystis pyrifera P11B4 male)
GCGTTCAGCTGGCAGCACGCCAGCAAAGCCATGGCAGTCACGTCCGCCAC
CACCATCGCCTCCTTCCTCGCCAACACCACCTCGTCCATGCCCGCCATCT
ACACCTTCGGCATGTTCGCAGCCTGCCTCGTCTTTGTCAACTACTGCTCC
GTCATCCTCTACTACCCCACCGTCCTCACCTTCTCCCACATCAAGTTCCA
CAACACGCCCTTCTGCTGCGGCGCCGGCCGCGCCTGCCGCCGCATCCGCG
ACAACATGCACAAGGAGGAACAAGAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122166:3..278+

>mRNA_M-pyrifera_M_contig122166.4566.1 ID=mRNA_M-pyrifera_M_contig122166.4566.1|Name=mRNA_M-pyrifera_M_contig122166.4566.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig122166:3..278+ (Macrocystis pyrifera P11B4 male)
ATGGCAGTCACGTCCGCCACCACCATCGCCTCCTTCCTCGCCAACACCAC
CTCGTCCATGCCCGCCATCTACACCTTCGGCATGTTCGCAGCCTGCCTCG
TCTTTGTCAACTACTGCTCCGTCATCCTCTACTACCCCACCGTCCTCACC
TTCTCCCACATCAAGTTCCACAACACGCCCTTCTGCTGCGGCGCCGGCCG
CGCCTGCCGCCGCATCCGCGACAACATGCACAAGGAGGAACAAGAGATGG
CAGTCACGTCCGCCACCACCATCGCCTCCTTCCTCGCCAACACCACCTCG
TCCATGCCCGCCATCTACACCTTCGGCATGTTCGCAGCCTGCCTCGTCTT
TGTCAACTACTGCTCCGTCATCCTCTACTACCCCACCGTCCTCACCTTCT
CCCACATCAAGTTCCACAACACGCCCTTCTGCTGCGGCGCCGGCCGCGCC
TGCCGCCGCATCCGCGACAACATGCACAAGGAGGAACAAGAG