mRNA_M-pyrifera_M_contig122146.4561.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122146.4561.1
Unique NamemRNA_M-pyrifera_M_contig122146.4561.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Match: F0ZAY1_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZAY1_DICPU)

HSP 1 Score: 75.9 bits (185), Expect = 1.380e-13
Identity = 40/109 (36.70%), Postives = 58/109 (53.21%), Query Frame = 1
Query:   31 VVEGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDAKSLGYIPLGFGCSVVKFDRDAKASESAPDAELSPRCGASAAVKNVCAFRIITKKRTFLLEAESKEDMRAWVK 357
            VV+GYLTK G++VKNWK+RWF F+ + L+Y K +  +K LG IPL  G  +   +                            +F I TK+RT+L+ A+SK D++ W K
Sbjct:  665 VVQGYLTKIGEVVKNWKRRWFVFENNYLFYLKGQSSSKVLGIIPL-IGSRIENIEDT--------------------------SFNITTKQRTYLIIADSKSDLQMWTK 746          
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Match: L8HHC3_ACACA (PH domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHC3_ACACA)

HSP 1 Score: 73.9 bits (180), Expect = 6.610e-13
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   10 WSLMEAPVVEGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDAKSLGYIPLGFGC 177
            +S  + P  EG+LTK+G  VKNWK+RWF   EDRLYYYK+ GD   LG+IPL   C
Sbjct:  184 FSRYDTPSKEGWLTKQGGRVKNWKRRWFILSEDRLYYYKKPGDMTPLGFIPLSRCC 239          
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Match: A0A1Y2E5A7_9FUNG (PH-domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2E5A7_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 2.250e-12
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   16 LMEAPVVEGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDAKSLGYIPLGFGCSVVKFDRDAKASES--APDAELSPRCGASAAVKNVCAFRIITKKRTFLLEAESKEDMRAWVKRL 363
            L E  +  GYL K+G+  K WK+RWF F+ +RL YYK + + K L  IPL    SV  ++   K  +S     ++ +P          + AF + TK+RT+LL+A+S +D   W+K L
Sbjct:   39 LNEKIIKSGYLKKKGEKRKVWKRRWFVFRPNRLSYYKNEKEYKLLKVIPLDDILSVYNYNDQQKYIQSINTNKSDSTPVSSKPQKQNLMNAFYVNTKERTYLLQAQSVDDRDQWIKAL 156          
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Match: UPI0009E4E9FC (pleckstrin homology domain-containing family H member 2-like isoform X2 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4E9FC)

HSP 1 Score: 71.6 bits (174), Expect = 4.320e-12
Identity = 40/109 (36.70%), Postives = 51/109 (46.79%), Query Frame = 1
Query:   37 EGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDA--KSLGYIPLGFGCSVVKFDRDAKASESAPDAELSPRCGASAAVKNVCAFRIITKKRTFLLEAESKEDMRAWVK 357
            EGYLTK G  VKNWKKRWF   + +LYYYK + D   K LG IPL   C + + D                             F + T KRTF L  E+ E + +W++
Sbjct:  519 EGYLTKLGGRVKNWKKRWFVLGDGKLYYYKTENDVNRKPLGQIPLDDTCRIARTD-------------------------GALTFEVTTPKRTFYLTGETTEIVDSWLR 602          
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Match: Q54F88_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54F88_DICDI)

HSP 1 Score: 70.5 bits (171), Expect = 1.080e-11
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 1
Query:   31 VVEGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDAKSLGYIPLGFGCSVVKFDRDAKASESAPDAELSPRCGASAAVKNVCAFRIITKKRTFLLEAESKEDMRAWVK 357
            V++GYLTK G++VKNWK+RWF F+ + L+Y K +  +K LG IPL  G  +   D+                           +F I T  RT+L+ A+S+ ++  W K
Sbjct:  732 VMQGYLTKIGEVVKNWKRRWFIFESNYLFYLKNEQSSKVLGIIPL-IGSKIENIDQT--------------------------SFNISTTSRTYLIIADSQNELSKWTK 813          
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Match: A0A2B4SVX6_STYPI (Pleckstrin-likey domain-containing family H member 2 n=6 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SVX6_STYPI)

HSP 1 Score: 70.1 bits (170), Expect = 1.500e-11
Identity = 39/109 (35.78%), Postives = 50/109 (45.87%), Query Frame = 1
Query:   37 EGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDA--KSLGYIPLGFGCSVVKFDRDAKASESAPDAELSPRCGASAAVKNVCAFRIITKKRTFLLEAESKEDMRAWVK 357
            EGYLTK G  VKNWKKRWF   +  LYYYK + D   K LG IPL   C + + D +                             + T KRTF L  E+ E + +W++
Sbjct:  635 EGYLTKLGGRVKNWKKRWFVLHDGNLYYYKTENDVNRKPLGQIPLDGSCRIARTDGE-------------------------LTIEVATPKRTFYLTGETTEVVDSWLR 718          
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Match: A0A4P9Z1K6_9FUNG (Uncharacterized protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z1K6_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 1.920e-11
Identity = 39/112 (34.82%), Postives = 52/112 (46.43%), Query Frame = 1
Query:   22 EAPVVEGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDAKSLGYIPLGFGCSVVKFDRDAKASESAPDAELSPRCGASAAVKNVCAFRIITKKRTFLLEAESKEDMRAWVK 357
            E  +  GYL KRG++ K WKKRWF  ++  L YYK + + K LG IPL    +  +  R  K                    K    F I+T KR F   A S EDM +W++
Sbjct:   89 EQTINAGYLMKRGELRKTWKKRWFVLRQSELVYYKDQKEYKLLGIIPLDSILACAEVQRTKKRKS-----------------KRANVFGIVTTKRKFYFSAPSPEDMLSWLR 183          
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Match: UPI00077A1A88 (pleckstrin homology domain-containing family H member 1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A1A88)

HSP 1 Score: 65.9 bits (159), Expect = 2.220e-11
Identity = 37/109 (33.94%), Postives = 49/109 (44.95%), Query Frame = 1
Query:   37 EGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDA--KSLGYIPLGFGCSVVKFDRDAKASESAPDAELSPRCGASAAVKNVCAFRIITKKRTFLLEAESKEDMRAWVK 357
            EGYLTK G  VKNW+KRWF      LYYYK + +   K LG IPL   C + + D                             F + T KRTF L  +++E +  W++
Sbjct:   20 EGYLTKLGGHVKNWRKRWFVLSGGNLYYYKSENETNRKPLGQIPLDGTCRIARTD-------------------------GALTFEVATPKRTFYLTGDTEEVVDDWLR 103          
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Match: F4PIU6_CAVFA (Pleckstrin domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PIU6_CAVFA)

HSP 1 Score: 68.6 bits (166), Expect = 5.090e-11
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = 1
Query:   37 EGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDAKSLGYIPLGFGCSVVKFDRDAKASESAPDAELSPRCGASAAVKNVCAFRIITKKRTFLLEAESKEDMRAW 351
            EGYLTK G +VKNWK+RWF  +   L+Y K + D++ LG I L  G ++     + K                        +F I+TK RTF+L  +++E++R W
Sbjct:  738 EGYLTKVGGVVKNWKRRWFIMENGYLFYLKDRNDSQQLGTIAL-IGSTIESISIEGK------------------------SFSIVTKHRTFMLMGDTEEEIREW 817          
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Match: A0A152A340_9MYCE (Pleckstrin (PH) domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A340_9MYCE)

HSP 1 Score: 68.2 bits (165), Expect = 6.880e-11
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 1
Query:   37 EGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDAKSLGYIPLGFGCSVVKFDRDAKASESAPDAELSPRCGASAAVKNVCAFRIITKKRTFLLEAESKEDMRAWV 354
            +GYLTK G++VKNWK+RWF  + + L+Y K +   K LG IPL  G  V    ++ +                         F I+TK RT+L+ A+S++D   WV
Sbjct:  623 QGYLTKIGEVVKNWKRRWFIMENNYLFYLKNQRSNKVLGRIPL-IGSKVENVSKEQR------------------------GFNIVTKTRTYLIIADSEKDTVEWV 703          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122146.4561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0ZAY1_DICPU1.380e-1336.70Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
L8HHC3_ACACA6.610e-1357.14PH domain containing protein n=1 Tax=Acanthamoeba ... [more]
A0A1Y2E5A7_9FUNG2.250e-1236.44PH-domain-containing protein n=1 Tax=Neocallimasti... [more]
UPI0009E4E9FC4.320e-1236.70pleckstrin homology domain-containing family H mem... [more]
Q54F88_DICDI1.080e-1133.94Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A2B4SVX6_STYPI1.500e-1135.78Pleckstrin-likey domain-containing family H member... [more]
A0A4P9Z1K6_9FUNG1.920e-1134.82Uncharacterized protein n=1 Tax=Syncephalis pseudo... [more]
UPI00077A1A882.220e-1133.94pleckstrin homology domain-containing family H mem... [more]
F4PIU6_CAVFA5.090e-1134.29Pleckstrin domain-containing protein n=1 Tax=Caven... [more]
A0A152A340_9MYCE6.880e-1134.91Pleckstrin (PH) domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122146contigM-pyrifera_M_contig122146:122..484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue4.3e-11
Seed eggNOG ortholog5786.XP_003284588.1
KEGG koko:K16743
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
EggNOG OGs3XG1E@554915,COG5422@1,KOG4424@2759
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.3643491-CDS-M-pyrifera_M_contig122146:121..4841622815741.3643491-CDS-M-pyrifera_M_contig122146:121..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122146 122..484 +
1692277547.6867714-CDS-M-pyrifera_M_contig122146:121..4841692277547.6867714-CDS-M-pyrifera_M_contig122146:121..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122146 122..484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122146.4561.1prot_M-pyrifera_M_contig122146.4561.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122146 122..484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122146.4561.1

>prot_M-pyrifera_M_contig122146.4561.1 ID=prot_M-pyrifera_M_contig122146.4561.1|Name=mRNA_M-pyrifera_M_contig122146.4561.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MSEWSLMEAPVVEGYLTKRGDIVKNWKKRWFQFQEDRLYYYKRKGDAKSL
GYIPLGFGCSVVKFDRDAKASESAPDAELSPRCGASAAVKNVCAFRIITK
KRTFLLEAESKEDMRAWVKRL
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mRNA from alignment at M-pyrifera_M_contig122146:122..484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122146.4561.1 ID=mRNA_M-pyrifera_M_contig122146.4561.1|Name=mRNA_M-pyrifera_M_contig122146.4561.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig122146:122..484+ (Macrocystis pyrifera P11B4 male)
ATGTCGGAGTGGTCGCTCATGGAGGCGCCTGTGGTGGAGGGCTACCTCAC GAAGAGAGGGGACATTGTCAAGAACTGGAAGAAGCGCTGGTTCCAGTTCC AGGAAGACCGGCTGTACTACTACAAGCGTAAGGGGGACGCCAAGTCCCTG GGCTACATTCCCCTGGGCTTTGGCTGCTCGGTAGTGAAGTTTGACAGAGA CGCAAAGGCCAGCGAGTCCGCGCCTGACGCCGAGCTGAGCCCGCGCTGCG GCGCCTCAGCGGCGGTGAAGAATGTGTGTGCCTTCAGAATCATCACGAAG AAGCGGACGTTCTTGCTCGAGGCAGAGAGTAAGGAGGACATGCGGGCGTG GGTGAAGCGACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122146:122..484+

>mRNA_M-pyrifera_M_contig122146.4561.1 ID=mRNA_M-pyrifera_M_contig122146.4561.1|Name=mRNA_M-pyrifera_M_contig122146.4561.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig122146:122..484+ (Macrocystis pyrifera P11B4 male)
ATGTCGGAGTGGTCGCTCATGGAGGCGCCTGTGGTGGAGGGCTACCTCAC
GAAGAGAGGGGACATTGTCAAGAACTGGAAGAAGCGCTGGTTCCAGTTCC
AGGAAGACCGGCTGTACTACTACAAGCGTAAGGGGGACGCCAAGTCCCTG
GGCTACATTCCCCTGGGCTTTGGCTGCTCGGTAGTGAAGTTTGACAGAGA
CGCAAAGGCCAGCGAGTCCGCGCCTGACGCCGAGCTGAGCCCGCGCTGCG
GCGCCTCAGCGGCGGTGAAGAATGTGTGTGCCTTCAGAATCATCACGAAG
AAGCGGACGTTCTTGCTCGAGGCAGAGAGTAAGGAGGACATGCGGGCGTG
GGTGAAGCGACTGATGTCGGAGTGGTCGCTCATGGAGGCGCCTGTGGTGG
AGGGCTACCTCACGAAGAGAGGGGACATTGTCAAGAACTGGAAGAAGCGC
TGGTTCCAGTTCCAGGAAGACCGGCTGTACTACTACAAGCGTAAGGGGGA
CGCCAAGTCCCTGGGCTACATTCCCCTGGGCTTTGGCTGCTCGGTAGTGA
AGTTTGACAGAGACGCAAAGGCCAGCGAGTCCGCGCCTGACGCCGAGCTG
AGCCCGCGCTGCGGCGCCTCAGCGGCGGTGAAGAATGTGTGTGCCTTCAG
AATCATCACGAAGAAGCGGACGTTCTTGCTCGAGGCAGAGAGTAAGGAGG
ACATGCGGGCGTGGGTGAAGCGACTG
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