mRNA_M-pyrifera_M_contig122139.4556.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122139.4556.1
Unique NamemRNA_M-pyrifera_M_contig122139.4556.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Match: A0A1Y1Z9K5_9FUNG (RING-type domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z9K5_9FUNG)

HSP 1 Score: 184 bits (467), Expect = 2.250e-54
Identity = 85/136 (62.50%), Postives = 107/136 (78.68%), Query Frame = 1
Query:    1 NRGTYVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIVFNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQLDDDCAICRERMTSAKRLPCKHVFHENCLRLWLEQHHSCPTCRLSLIEEGD 408
            +R  ++YYTEFVTD+LIL ATLCHY HI+ +HG SFTLIDAVLFLN+R VF+NLR K+A YR+YR+  +++  R+ S T EEL++ +DDCAICRE M SAK+LPC H+FH  CLR WLEQ  SCPTCR +L+   D
Sbjct:  158 SRSIWLYYTEFVTDTLILAATLCHYLHIMALHGISFTLIDAVLFLNIRSVFSNLRKKIAGYRSYRQAMNSLKRRYTSATKEELKEFNDDCAICREPMDSAKKLPCGHLFHSLCLRSWLEQDGSCPTCRRTLLAGND 293          
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Match: A0A397JPX3_9GLOM (RING-type domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JPX3_9GLOM)

HSP 1 Score: 184 bits (467), Expect = 6.200e-54
Identity = 87/134 (64.93%), Postives = 103/134 (76.87%), Query Frame = 1
Query:    1 NRGTYVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIVFNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQLDDDCAICRERMTSAKRLPCKHVFHENCLRLWLEQHHSCPTCRLSLIEE 402
            +RG  +YYTEFVTD+LIL ATL HY HI+ +HG SFTLI+AVLFLNMR VFNNLR K+ AYRNYRK    M  ++P+ T  EL   +DDCAICR+ MTSAKRLPC H+FH  CLR WLE H SCPTCR  L+++
Sbjct:  279 SRGLLLYYTEFVTDTLILIATLGHYLHIMLLHGISFTLINAVLFLNMRSVFNNLRKKIIAYRNYRKAISNMQTQYPNATDMELNDYNDDCAICRDSMTSAKRLPCGHMFHLECLRSWLEHHGSCPTCRRPLLKD 412          
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Match: A0A2N1MTV6_9GLOM (RING-type domain-containing protein n=7 Tax=Rhizophagus TaxID=1129544 RepID=A0A2N1MTV6_9GLOM)

HSP 1 Score: 184 bits (466), Expect = 6.240e-54
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 1
Query:    1 NRGTYVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIVFNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQLDDDCAICRERMTSAKRLPCKHVFHENCLRLWLEQHHSCPTCRLSLIEEGDGPAV 420
            +RG  +YYTEFVTD+LIL ATL HY HI+ +HG SFTLIDAVLFLNMR VFNNLR K+ AY NYR+    M  ++P+ T  EL++ +DDCAICR+ M  AK+LPC H+FH  CLR WLE H SCPTCR SL++ GD P +
Sbjct:  275 SRGILLYYTEFVTDTLILVATLGHYLHIMLLHGISFTLIDAVLFLNMRSVFNNLRKKIVAYCNYRQAISNMQTQYPNATEIELKEYNDDCAICRDSMDKAKKLPCGHMFHLTCLRSWLEHHSSCPTCRRSLLK-GDSPRI 413          
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Match: A0A397U4B6_9GLOM (RING-type domain-containing protein n=5 Tax=Gigaspora TaxID=4873 RepID=A0A397U4B6_9GLOM)

HSP 1 Score: 181 bits (459), Expect = 1.020e-52
Identity = 85/132 (64.39%), Postives = 102/132 (77.27%), Query Frame = 1
Query:    1 NRGTYVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIVFNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQLDDDCAICRERMTSAKRLPCKHVFHENCLRLWLEQHHSCPTCRLSLI 396
            +RG  +YYTEFVTD+LIL ATL HY HI+ +HG SFTLIDAVLFLNMR VFNNLR K+ AY NYR+    M  ++P+ T  EL + +DDCAICR+ M SAK+LPC H+FH +CLR WLEQH SCPTCR  L+
Sbjct:  291 SRGLLLYYTEFVTDTLILVATLGHYLHIMLLHGVSFTLIDAVLFLNMRSVFNNLRKKITAYCNYRQAISNMQTQYPNATDLELNEYNDDCAICRDSMVSAKKLPCGHMFHLSCLRSWLEQHSSCPTCRRQLL 422          
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Match: Q54WX3_DICDI (RING-type domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54WX3_DICDI)

HSP 1 Score: 168 bits (425), Expect = 3.550e-46
Identity = 75/133 (56.39%), Postives = 98/133 (73.68%), Query Frame = 1
Query:    4 RGTYVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIVFNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQLDDDCAICRERMTSAKRLPCKHVFHENCLRLWLEQHHSCPTCRLSLIEE 402
            RG Y+YYTEF TDS+IL  T  H  HI+ + GF+ TL+  V+F   ++VF NL  K+ AYRNY KL   M+  +P++  ++LE  +DDCAICR+RM +AK+LPC H+FH +CLR WLEQHHSCPTCR SLI+E
Sbjct:  224 RGQYIYYTEFSTDSVILAGTCAHLIHIIIIQGFTPTLLHVVMFFYFKMVFGNLNRKITAYRNYCKLTSDMDNCYPNVGEKDLENYNDDCAICRDRMVTAKKLPCGHIFHHSCLRAWLEQHHSCPTCRRSLIDE 356          
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Match: F0ZBQ8_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZBQ8_DICPU)

HSP 1 Score: 168 bits (425), Expect = 3.640e-46
Identity = 74/133 (55.64%), Postives = 99/133 (74.44%), Query Frame = 1
Query:    4 RGTYVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIVFNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQLDDDCAICRERMTSAKRLPCKHVFHENCLRLWLEQHHSCPTCRLSLIEE 402
            RG Y+YYTEF TDS+IL  T  H  HI+ + GF+ TL+  V+F   ++VF NL  K+ AYRNY KL   M+  +P+++ ++LE  +DDCAICR++M +AK+LPC H+FH +CLR WLEQHHSCPTCR SLI+E
Sbjct:  225 RGQYIYYTEFSTDSVILAGTCAHLIHIIIIQGFTPTLLHVVMFFYFKMVFGNLNRKITAYRNYCKLTSDMDNCYPNVSEKDLENYNDDCAICRDKMVTAKKLPCGHIFHHSCLRAWLEQHHSCPTCRRSLIDE 357          
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Match: A0A7S4IFH0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IFH0_9EUKA)

HSP 1 Score: 166 bits (419), Expect = 1.090e-45
Identity = 77/130 (59.23%), Postives = 98/130 (75.38%), Query Frame = 1
Query:   13 YVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIVFNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQ--LDDDCAICRERMTSAKRLPCKHVFHENCLRLWLEQHHSCPTCRLSLI 396
            Y+Y+TE VTD+L L  TL HYC ++YMHG SFTLIDAVLFLNMR VFN LR K+ +Y NYRKLA AM++ FP+++  + E    +D C ICR+RM   K+LPC HVFHE+C+  WLEQ ++CPTCR  L+
Sbjct:  228 YMYHTELVTDTLGLVLTLAHYCQVIYMHGISFTLIDAVLFLNMRKVFNRLRQKINSYLNYRKLARAMDSVFPTVSRSDFESGAYEDFCLICRDRMNVGKKLPCSHVFHESCILSWLEQQNTCPTCREPLM 357          
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Match: A0A2P6NI29_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NI29_9EUKA)

HSP 1 Score: 163 bits (412), Expect = 7.270e-45
Identity = 79/154 (51.30%), Postives = 99/154 (64.29%), Query Frame = 1
Query:    1 NRGTYVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIVFNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQLDDDCAICRERMTSAKRLPCKHVFHE----------------NCLRLWLEQHHSCPTCRLSLIEEGDGP 414
            +RG ++YYTEF+TD+LIL  TL HY      HG   TLID +LFL M+ V  NLR K+  YRNYRKLA  M  ++P + +EEL QLDD CA+C +RM +AKRLPC H+FH+                +CLR WLE HH+CPTCR SLI+    P
Sbjct:  211 SRGAWIYYTEFLTDTLILVLTLGHYIQFFLHHGIHVTLIDGILFLYMKNVATNLRLKINTYRNYRKLAADMKEKYPDVPSEELAQLDDVCAVCHDRMLTAKRLPCSHIFHQYVTRILVEISTTHPHSSCLRSWLENHHNCPTCRYSLIDNVPAP 364          
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Match: A0A151Z9C0_9MYCE (Putative ubiquitin-protein ligase (E3) n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z9C0_9MYCE)

HSP 1 Score: 162 bits (409), Expect = 1.380e-44
Identity = 72/135 (53.33%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    4 RGTYVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIVFNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQLDDDCAICRERMTSAKRLPCKHVFHENCLRLWLEQHHSCPTCRLSLIEEGD 408
            RG Y+YYTEF TDS+IL  T  H  HI+ + G + TL+  VL   +++VF +L++K+ +Y+NY KL   M+  +P++T  EL+  +DDCAICR+RM +AK+LPC H+FH +CLR WLEQHHSCPTCR SLI+  D
Sbjct:  216 RGQYIYYTEFTTDSVILAGTCFHLIHIVIIQGVTPTLLHIVLLCYLKLVFTSLKNKIISYKNYCKLTDDMDNSYPNVTELELKAYNDDCAICRDRMDTAKKLPCNHIFHHSCLRAWLEQHHSCPTCRCSLIDHLD 350          
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Match: A0A0L0GBS7_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GBS7_9EUKA)

HSP 1 Score: 164 bits (415), Expect = 2.940e-44
Identity = 73/134 (54.48%), Postives = 98/134 (73.13%), Query Frame = 1
Query:    4 RGTYVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIVFNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQLDDDCAICRERMTSAKRLPCKHVFHENCLRLWLEQHHSCPTCRLSLIEEG 405
            R + +Y+TE +TD  +  ATL HY H+L +HG +FTLIDAVLFLN+R  F   R ++A YRNY     ++N  +P +T E+L+  DD CAICR+ M +AK+LPCKH+FH +CLR WLE H SCPTCR+SL+E+G
Sbjct:  217 RNSLMYHTEIITDLAVQLATLLHYVHVLALHGINFTLIDAVLFLNIRTEFKQFRKRLAGYRNYFIANRSLNTLYPDVTPEQLKIYDDHCAICRDDMLNAKQLPCKHMFHASCLRSWLEHHGSCPTCRMSLVEDG 350          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122139.4556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1Z9K5_9FUNG2.250e-5462.50RING-type domain-containing protein n=1 Tax=Basidi... [more]
A0A397JPX3_9GLOM6.200e-5464.93RING-type domain-containing protein n=1 Tax=Divers... [more]
A0A2N1MTV6_9GLOM6.240e-5462.14RING-type domain-containing protein n=7 Tax=Rhizop... [more]
A0A397U4B6_9GLOM1.020e-5264.39RING-type domain-containing protein n=5 Tax=Gigasp... [more]
Q54WX3_DICDI3.550e-4656.39RING-type domain-containing protein n=1 Tax=Dictyo... [more]
F0ZBQ8_DICPU3.640e-4655.64Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A7S4IFH0_9EUKA1.090e-4559.23Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A2P6NI29_9EUKA7.270e-4551.30Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A151Z9C0_9MYCE1.380e-4453.33Putative ubiquitin-protein ligase (E3) n=1 Tax=Tie... [more]
A0A0L0GBS7_9EUKA2.940e-4454.48Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122139contigM-pyrifera_M_contig122139:110..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score177.9
Seed ortholog evalue3.2e-42
Seed eggNOG ortholog588596.U9U212
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BAT3 complex binding
EggNOG OGs38F9G@33154,3P3M2@4751,COG5243@1,KOG0802@2759
COG Functional cat.O
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.1919477-CDS-M-pyrifera_M_contig122139:109..5291622815741.1919477-CDS-M-pyrifera_M_contig122139:109..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122139 110..529 -
1692277547.6281643-CDS-M-pyrifera_M_contig122139:109..5291692277547.6281643-CDS-M-pyrifera_M_contig122139:109..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122139 110..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122139.4556.1prot_M-pyrifera_M_contig122139.4556.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122139 110..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122139.4556.1

>prot_M-pyrifera_M_contig122139.4556.1 ID=prot_M-pyrifera_M_contig122139.4556.1|Name=mRNA_M-pyrifera_M_contig122139.4556.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
NRGTYVYYTEFVTDSLILTATLCHYCHILYMHGFSFTLIDAVLFLNMRIV
FNNLRDKVAAYRNYRKLAHAMNARFPSMTAEELEQLDDDCAICRERMTSA
KRLPCKHVFHENCLRLWLEQHHSCPTCRLSLIEEGDGPAV
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mRNA from alignment at M-pyrifera_M_contig122139:110..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122139.4556.1 ID=mRNA_M-pyrifera_M_contig122139.4556.1|Name=mRNA_M-pyrifera_M_contig122139.4556.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig122139:110..529- (Macrocystis pyrifera P11B4 male)
AACCGTGGCACCTATGTGTACTACACCGAGTTCGTGACGGACTCCCTCAT CCTGACGGCGACGCTTTGCCACTACTGCCACATTCTCTACATGCACGGCT TCTCCTTCACGCTCATCGACGCCGTGCTCTTCCTCAACATGCGGATTGTC TTCAACAACCTCCGCGACAAGGTGGCGGCCTACAGGAACTACCGCAAGCT GGCGCACGCCATGAACGCCCGCTTCCCCAGCATGACTGCCGAGGAGCTGG AGCAGCTCGACGACGACTGCGCCATCTGCCGCGAGCGTATGACGAGCGCC AAGCGCCTGCCCTGCAAGCACGTCTTCCACGAGAACTGCCTGCGCCTCTG GCTGGAGCAGCACCACTCCTGTCCCACCTGCCGCCTGTCGCTCATCGAGG AGGGCGACGGCCCTGCTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122139:110..529-

>mRNA_M-pyrifera_M_contig122139.4556.1 ID=mRNA_M-pyrifera_M_contig122139.4556.1|Name=mRNA_M-pyrifera_M_contig122139.4556.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig122139:110..529- (Macrocystis pyrifera P11B4 male)
AACCGTGGCACCTATGTGTACTACACCGAGTTCGTGACGGACTCCCTCAT
CCTGACGGCGACGCTTTGCCACTACTGCCACATTCTCTACATGCACGGCT
TCTCCTTCACGCTCATCGACGCCGTGCTCTTCCTCAACATGCGGATTGTC
TTCAACAACCTCCGCGACAAGGTGGCGGCCTACAGGAACTACCGCAAGCT
GGCGCACGCCATGAACGCCCGCTTCCCCAGCATGACTGCCGAGGAGCTGG
AGCAGCTCGACGACGACTGCGCCATCTGCCGCGAGCGTATGACGAGCGCC
AAGCGCCTGCCCTGCAAGCACGTCTTCCACGAGAACTGCCTGCGCCTCTG
GCTGGAGCAGCACCACTCCTGTCCCACCTGCCGCCTGTCGCTCATCGAGG
AGGGCGACGGCCCTGCTGTGAACCGTGGCACCTATGTGTACTACACCGAG
TTCGTGACGGACTCCCTCATCCTGACGGCGACGCTTTGCCACTACTGCCA
CATTCTCTACATGCACGGCTTCTCCTTCACGCTCATCGACGCCGTGCTCT
TCCTCAACATGCGGATTGTCTTCAACAACCTCCGCGACAAGGTGGCGGCC
TACAGGAACTACCGCAAGCTGGCGCACGCCATGAACGCCCGCTTCCCCAG
CATGACTGCCGAGGAGCTGGAGCAGCTCGACGACGACTGCGCCATCTGCC
GCGAGCGTATGACGAGCGCCAAGCGCCTGCCCTGCAAGCACGTCTTCCAC
GAGAACTGCCTGCGCCTCTGGCTGGAGCAGCACCACTCCTGTCCCACCTG
CCGCCTGTCGCTCATCGAGGAGGGCGACGGCCCTGCTGTG
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