mRNA_M-pyrifera_M_contig122121.4550.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122121.4550.1
Unique NamemRNA_M-pyrifera_M_contig122121.4550.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Match: A0A7Y2IHH0_9ACTN (DUF268 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IHH0_9ACTN)

HSP 1 Score: 168 bits (425), Expect = 9.050e-49
Identity = 83/138 (60.14%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 YPFSHPNLTVFERPFEELERNSDFDAVILLSTIEHFGIGAYRGNPAAAETADLDTLKILPEVLKPGGLLVLTTPYGPADQNELERTYDLDRLHLLLEGWSIDRVNIAHRTDSCTWTLESTTLEPPRGPGRVVMLTARP 414
            YPF HPNL V   P E+L     FDAV+LLSTIEHFGIG Y G P   E ADL  +K++ ++L P GLL LT PYGPA+ NELER YDL+RL  LLEGW I    I  R D+ TW LES  L  P GPGRV MLTARP
Sbjct:  186 YPFEHPNLEVLLHPLEDLPPGRTFDAVVLLSTIEHFGIGHYSGGPEPDEDADLAAMKLVAKLLSPNGLLSLTVPYGPAEVNELERIYDLERLQRLLEGWDILDARIGRRADATTWVLESNELSSPSGPGRVAMLTARP 323          
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Match: A0A7Y2DML4_9ACTN (DUF268 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DML4_9ACTN)

HSP 1 Score: 154 bits (390), Expect = 2.050e-43
Identity = 73/138 (52.90%), Postives = 91/138 (65.94%), Query Frame = 1
Query:    1 YPFSHPNLTVFERPFEELERNSDFDAVILLSTIEHFGIGAYRGNPAAAETADLDTLKILPEVLKPGGLLVLTTPYGPADQNELERTYDLDRLHLLLEGWSIDRVNIAHRTDSCTWTLESTTLEPPRGPGRVVMLTARP 414
            YPF+HP L V + P EEL  + DFDA +LLS IEHFGIG Y+G P     AD   +  + ++LKP G+LVLT PYGPA+ NELER YD +RL  LLEGW++ R  +  RT   TW +E+  L PP GPG V M+ A P
Sbjct:  199 YPFAHPRLDVRQHPLEELTADGDFDAAVLLSAIEHFGIGHYKGGPEPDIDADRKAMSHVKKLLKPNGILVLTVPYGPAETNELERIYDRERLSNLLEGWTVLRARVGRRTTETTWEIEAEELIPPAGPGHVAMVVASP 336          
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Match: A0A349B7A5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B7A5_9ACTN)

HSP 1 Score: 141 bits (356), Expect = 2.590e-38
Identity = 74/146 (50.68%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    1 YPFSHPNLTVFERPFEELERNSDFDAVILLSTIEHFGIGAYRGNPAAAETADLDTLKILPEVLKPGGLLVLTTPYGPADQNELERTYDLDRLHLLLEGWSIDRVNIAHRTDSCTWTLESTT------LEPPRGPGRVVMLTARPVA 420
            YP+ HPNLTV E   EE E ++  DAVILLS IEHFGIGAY  N      ADL  +K++ ++L P G++VLTTP+GP+  NELERTYD++RL  L EG+ I+ V IA R D+ TWT+ +T       +  P  PG V M+ AR  A
Sbjct:  196 YPYEHPNLTVNEATLEEYEPDAPVDAVILLSAIEHFGIGAYANNGELDADADLAAMKVVRDLLAPDGIVVLTTPFGPSAVNELERTYDVERLGSLFEGYRIEEVVIASRQDATTWTVTTTAGSLDDGITTPGAPGHVAMVRARRTA 341          
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Match: A0A7W1ENT8_9BACT (Class I SAM-dependent methyltransferase (Fragment) n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7W1ENT8_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 1.960e-21
Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 YPFSHPNLTVFERPFEELERNSD-FDAVILLSTIEHFGIGAYRGNPAAAETADLDTLKILPEVLKPGGLLVLTTPYGPADQNELERTYDLDRLHLLLEGWSI-DRVNIAHRTDSCTWT 348
            YPF+HPNL V + P E+     D +DA +L+ST+EH G+G Y   P A +  D   L  + EV++PGG++V+T PYG A+  E++R YD   L  LLEG  I DRV +  R    TWT
Sbjct:  231 YPFTHPNLDVVQEPLEDATLEPDTYDAALLISTVEHVGLGWYGERPGAYD--DRRALARIAEVVRPGGIVVVTVPYGTAEVTEVQRIYDAPGLDALLEGLEIVDRVIVEER--DATWT 344          
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Match: A0A7W0RWD4_9ACTN (DUF268 domain-containing protein n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7W0RWD4_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 6.590e-15
Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 YPFSHPNLTVFERPFEELERNSD-FDAVILLSTIEHFGIGAYRGNPAAAETADLDTLKILPEVLKPGGLLVLTTPYGPADQNELERTYDLDRLHLLLEGWSIDRVNIAHRTDSCTWTLESTTLEPPRGPGRVVMLTAR 411
            +P +HP L       +EL+  +  FDA ++LS +EHFG+  Y G   + E  D+  L  L E++ PGG LVLT P+G    +  +R YD   L  LL GW I+      RTD  TW L +    P R    V ++TAR
Sbjct:  168 HPLAHPRLRHAACRLDELDTPAQLFDAAVVLSAVEHFGLEHY-GVGGSDERLDVAALVRLRELVAPGGQLVLTVPFGAPSVDAFQRVYDEAGLAELLTGWRIETSLRVGRTDRHTWELGA----PSREGHGVALVTAR 300          
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Match: A0A2W5XNJ4_9BACT (Methyltransf_11 domain-containing protein n=1 Tax=Candidatus Eremiobacter sp. RRmetagenome_bin22 TaxID=2599629 RepID=A0A2W5XNJ4_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 1.560e-12
Identity = 46/119 (38.66%), Postives = 59/119 (49.58%), Query Frame = 1
Query:    1 YPFSHPNLTVFERPFEE--LERNSDFDAVILLSTIEHFGIGAYRGNPAAAETADLDTLKILPEVLKPGGLLVLTTPYGPADQNELERTYDLDRLHLLLEGWSIDRVNIAHRTDSCTWTL 351
            YP  HPNL   +       LER S FD  ILLSTIEH G+G Y       + A +  +  L   LKPGGLL++T P+G      L R +D   L  LL  + +D +    + D  TW L
Sbjct:  194 YPLRHPNLRFIQGDVMTVPLERES-FDGAILLSTIEHIGLGWYGDEVGDHQAAVMTRIHHL---LKPGGLLLVTVPFGRPAVTPLHRIFDSSTLSRLLSQFRLDNLEYGIKVDEKTWLL 308          
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Match: A0A1F9X9I3_9BACT (Methyltransf_11 domain-containing protein n=1 Tax=Elusimicrobia bacterium RIFOXYB2_FULL_48_7 TaxID=1797967 RepID=A0A1F9X9I3_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 4.590e-12
Identity = 39/114 (34.21%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    4 PFSHPNLTVFERPFEELERNSDFDAVILLSTIEHFGIGAYRGNPAAAETADLDTLKILPEVLKPGGLLVLTTPYGPADQNELERTYDLDRLHLLLEGWSIDRVNIAHRTDSCTW 345
            PF+     +++  FE    N+ FD V+ +STIEH G+GAY     A+E  +L  +  +  +LKPGG L++T P+G     +  R YD + L  LL+ + +++V   ++ D  TW
Sbjct:  108 PFTFTKQDIYKTDFE----NNYFDCVVSVSTIEHIGLGAY--GDIASEGKELPVIDEIYRILKPGGKLIVTLPFGIRSTGKTLRIYDQESLDTLLKKFQVEKVKYYYK-DKNTW 214          
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Match: A0A0F9SVA8_9ZZZZ (Methyltransf_11 domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9SVA8_9ZZZZ)

HSP 1 Score: 68.9 bits (167), Expect = 2.390e-11
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    7 FSHPNLTVFERPFEELERNSD-FDAVILLSTIEHFGIGAYRGNPAAAETADLDTLKILPEVLKPGGLLVLTTPYGPADQNELERTYDLDRLHLLLEGWSIDRVNIAHRT 330
            F H NL   +  F  ++  S+ FD  I +S +EH G+ AY   P   E  D   ++ +  +LK GG L+LT P+G A  N+ ER YD   L+ L++ + ID   I  R+
Sbjct:  113 FKHKNLEFIQGNFFNIDLPSESFDCAICISVVEHIGLPAYNIKPF--ENGDKKAIEKIYTLLKKGGKLILTVPFGKAIINQFERNYDQKSLNQLIKKFKIDEFKIFERS 219          
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Match: A0A662TVB6_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A662TVB6_9EURY)

HSP 1 Score: 67.8 bits (164), Expect = 6.120e-11
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 YPFSHPNLTVFERPF--EELERNSDFDAVILLSTIEHFGIGAYRGNPAAAETADLDTLKILPEVLKPGGLLVLTTPYGPADQ--NELERTYDLDRLHLLLEGWSI 303
            YP SHPNLT+ +  F    LE ++ FD VIL+STIEH G+G Y G P   + AD   +K +  +L   G +++T P+   ++   + ER Y  +R+  L EGW +
Sbjct:   85 YPESHPNLTIIQGDFLNNHLE-SASFDLVILISTIEHIGLGGY-GAPEYPD-ADFRVMKEVYRILTDEGKVIVTFPFNKRERVIPQFERWYTPERVRRLFEGWYV 186          
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Match: A0A534M021_9EURY (Class I SAM-dependent methyltransferase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534M021_9EURY)

HSP 1 Score: 66.2 bits (160), Expect = 2.830e-10
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   58 RNSDFDAVILLSTIEHFGIGAYRGNPAAAETADLDTLKILPEVLKPGGLLVLTTPYGPADQNELERTYDLDRLHLLLEGWSID 306
            R   FDA +++ST+EH GIG Y      A+  D   +  L  +++PGG L+LT P+G      ++R YD +RL  + EGW+I+
Sbjct:  128 RTDSFDAAVMVSTLEHVGIGWYDDRTDPAD--DQRIMGNLRTLVRPGGSLLLTVPFGRGGVGRIQRAYDDERLRTITEGWTIE 208          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122121.4550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2IHH0_9ACTN9.050e-4960.14DUF268 domain-containing protein n=1 Tax=Acidimicr... [more]
A0A7Y2DML4_9ACTN2.050e-4352.90DUF268 domain-containing protein n=1 Tax=Acidimicr... [more]
A0A349B7A5_9ACTN2.590e-3850.68Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7W1ENT8_9BACT1.960e-2144.92Class I SAM-dependent methyltransferase (Fragment)... [more]
A0A7W0RWD4_9ACTN6.590e-1537.68DUF268 domain-containing protein n=1 Tax=Solirubro... [more]
A0A2W5XNJ4_9BACT1.560e-1238.66Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A1F9X9I3_9BACT4.590e-1234.21Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A0F9SVA8_9ZZZZ2.390e-1135.78Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A662TVB6_9EURY6.120e-1139.05Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A534M021_9EURY2.830e-1038.55Class I SAM-dependent methyltransferase n=1 Tax=Eu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122121contigM-pyrifera_M_contig122121:104..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.2
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog272123.Anacy_4911
KEGG koko:K16868
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3-demethylubiquinone-9 3-O-methyltransferase activity
EggNOG OGsCOG2227@1,COG2227@2
EC2.1.1.265
COG Functional cat.H
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.9050076-CDS-M-pyrifera_M_contig122121:103..5291622815740.9050076-CDS-M-pyrifera_M_contig122121:103..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122121 104..529 -
1692277547.5064602-CDS-M-pyrifera_M_contig122121:103..5291692277547.5064602-CDS-M-pyrifera_M_contig122121:103..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122121 104..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122121.4550.1prot_M-pyrifera_M_contig122121.4550.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122121 104..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122121.4550.1

>prot_M-pyrifera_M_contig122121.4550.1 ID=prot_M-pyrifera_M_contig122121.4550.1|Name=mRNA_M-pyrifera_M_contig122121.4550.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
YPFSHPNLTVFERPFEELERNSDFDAVILLSTIEHFGIGAYRGNPAAAET
ADLDTLKILPEVLKPGGLLVLTTPYGPADQNELERTYDLDRLHLLLEGWS
IDRVNIAHRTDSCTWTLESTTLEPPRGPGRVVMLTARPVAA*
back to top

mRNA from alignment at M-pyrifera_M_contig122121:104..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122121.4550.1 ID=mRNA_M-pyrifera_M_contig122121.4550.1|Name=mRNA_M-pyrifera_M_contig122121.4550.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig122121:104..529- (Macrocystis pyrifera P11B4 male)
TACCCGTTCTCGCACCCGAATTTGACCGTGTTCGAGCGACCATTCGAAGA GCTCGAACGCAACAGTGACTTCGATGCCGTCATCCTGCTCTCGACCATCG AGCACTTCGGTATCGGCGCCTACCGCGGAAACCCTGCCGCAGCCGAAACA GCTGATCTCGACACCTTGAAGATCCTCCCCGAGGTTCTCAAGCCCGGCGG CCTTCTGGTTCTGACCACCCCGTACGGCCCAGCCGACCAGAACGAACTGG AACGCACCTACGACCTCGACCGCCTCCATCTCCTTCTAGAAGGATGGTCG ATCGATCGGGTCAACATCGCGCACCGAACCGATTCCTGCACCTGGACGCT CGAATCGACCACCCTCGAGCCGCCGCGCGGTCCGGGCAGAGTCGTGATGC TGACAGCGCGGCCCGTCGCCGCATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122121:104..529-

>mRNA_M-pyrifera_M_contig122121.4550.1 ID=mRNA_M-pyrifera_M_contig122121.4550.1|Name=mRNA_M-pyrifera_M_contig122121.4550.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig122121:104..529- (Macrocystis pyrifera P11B4 male)
TACCCGTTCTCGCACCCGAATTTGACCGTGTTCGAGCGACCATTCGAAGA
GCTCGAACGCAACAGTGACTTCGATGCCGTCATCCTGCTCTCGACCATCG
AGCACTTCGGTATCGGCGCCTACCGCGGAAACCCTGCCGCAGCCGAAACA
GCTGATCTCGACACCTTGAAGATCCTCCCCGAGGTTCTCAAGCCCGGCGG
CCTTCTGGTTCTGACCACCCCGTACGGCCCAGCCGACCAGAACGAACTGG
AACGCACCTACGACCTCGACCGCCTCCATCTCCTTCTAGAAGGATGGTCG
ATCGATCGGGTCAACATCGCGCACCGAACCGATTCCTGCACCTGGACGCT
CGAATCGACCACCCTCGAGCCGCCGCGCGGTCCGGGCAGAGTCGTGATGC
TGACAGCGCGGCCCGTCGCCGCATGATACCCGTTCTCGCACCCGAATTTG
ACCGTGTTCGAGCGACCATTCGAAGAGCTCGAACGCAACAGTGACTTCGA
TGCCGTCATCCTGCTCTCGACCATCGAGCACTTCGGTATCGGCGCCTACC
GCGGAAACCCTGCCGCAGCCGAAACAGCTGATCTCGACACCTTGAAGATC
CTCCCCGAGGTTCTCAAGCCCGGCGGCCTTCTGGTTCTGACCACCCCGTA
CGGCCCAGCCGACCAGAACGAACTGGAACGCACCTACGACCTCGACCGCC
TCCATCTCCTTCTAGAAGGATGGTCGATCGATCGGGTCAACATCGCGCAC
CGAACCGATTCCTGCACCTGGACGCTCGAATCGACCACCCTCGAGCCGCC
GCGCGGTCCGGGCAGAGTCGTGATGCTGACAGCGCGGCCCGTCGCCGCAT
GA
back to top