mRNA_M-pyrifera_M_contig122119.4549.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: A0A7S1YEB3_9EUKA (Ras-related protein Rab (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1YEB3_9EUKA) HSP 1 Score: 105 bits (261), Expect = 1.710e-26 Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
II+R+V + F +YKSTIG+DF++K IKWD+ +EV LQLWDIAGQERF NMTR YYK AVGA+VVFDVTR
Sbjct: 53 IIKRFVHNIFSTNYKSTIGVDFALKVIKWDDHTEVRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDVTR 122
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: A0A0B7MYN4_9FUNG (Ras-related protein Rab n=4 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7MYN4_9FUNG) HSP 1 Score: 102 bits (255), Expect = 1.270e-25 Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
IIRRYV + F ++YKSTIG+DF++K I+WD S V LQLWDIAGQERF NMTR YYK A+GAIVV+DVTR
Sbjct: 24 IIRRYVHNIFSSNYKSTIGVDFALKVIQWDSDSIVRLQLWDIAGQERFGNMTRVYYKEALGAIVVYDVTR 93
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: A0A7S4MNH4_9EUKA (Ras-related protein Rab n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNH4_9EUKA) HSP 1 Score: 103 bits (256), Expect = 1.290e-25 Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query: 13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
II+RYV + F YKSTIG+DF++K I WDE+S V LQLWDIAGQERF NMTR YYK AVGA VVFDVTR
Sbjct: 40 IIKRYVHNIFSMHYKSTIGVDFALKVINWDENSVVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDVTR 109
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: UPI0015B0903B (ras-related protein Rab-32 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B0903B) HSP 1 Score: 102 bits (253), Expect = 4.700e-25 Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
IIRRY F +Y+ TIG+DFS+K I WD S+ V LQLWDIAGQERF NMTR YYKGAVGA VVFD+TR
Sbjct: 60 IIRRYAHQLFSENYRVTIGVDFSLKVINWDSSTSVRLQLWDIAGQERFGNMTRVYYKGAVGAFVVFDLTR 129
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: L8HHC7_ACACA (Ras-related protein Rab n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHC7_ACACA) HSP 1 Score: 101 bits (251), Expect = 5.270e-25 Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query: 13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
IIRRYV + + SYKSTIG+DF++K I WD + V LQLWDIAGQER+ NMTR YYK AVGA VVFD+TR
Sbjct: 26 IIRRYVNNMYSDSYKSTIGVDFALKEINWDSKTLVRLQLWDIAGQERYGNMTRVYYKEAVGAFVVFDITR 95
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: UPI001AAD88FA (ras-related protein Rab-32 isoform X2 n=2 Tax=Ranoidea TaxID=30352 RepID=UPI001AAD88FA) HSP 1 Score: 100 bits (250), Expect = 6.950e-25 Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
IIRRYVQ F Y++TIG+DF++K I WD + V LQLWDIAGQERF NMTR YYK AVGA VVFDVTR
Sbjct: 28 IIRRYVQQLFTEHYRTTIGMDFALKIIDWDNGTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDVTR 97
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: A0A1S3AHG3_ERIEU (Ras-related protein Rab n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3AHG3_ERIEU) HSP 1 Score: 100 bits (248), Expect = 1.320e-24 Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
II+RYVQ +F A Y++TIG+DF++K ++WD ++ V LQLWDIAGQERF NMTR YY+ A+GA +VFDVTR
Sbjct: 25 IIKRYVQQRFSAHYRATIGVDFALKVLRWDANTVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTR 94
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: UPI0008708CE3 (ras-related protein Rab-32 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0008708CE3) HSP 1 Score: 98.2 bits (243), Expect = 2.030e-24 Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query: 13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
IIRRYV + Y++TIG+DF++K I+WDE++ V LQLWDIAGQERF NMTR Y+K AVGA +VFDVTR
Sbjct: 55 IIRRYVHKAYSEHYRATIGVDFALKVIQWDENTVVRLQLWDIAGQERFGNMTRVYFKEAVGAFIVFDVTR 124
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: M3XLF6_LATCH (Ras-related protein Rab n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=M3XLF6_LATCH) HSP 1 Score: 98.6 bits (244), Expect = 2.160e-24 Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
II+RYV F Y++TIG+DF++K I WD S+ V LQLWDIAGQERF NMTR YYK AVGA VVFDVTR
Sbjct: 29 IIKRYVHQLFSQHYRATIGVDFALKVINWDSSTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDVTR 98
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: UPI001F043888 (ras-related protein Rab-38-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043888) HSP 1 Score: 99.8 bits (247), Expect = 2.190e-24 Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 16 IRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
IR+YV KF +YK+TIG DF++K++ WDE+ + LQLWDIAGQERF MTR YY+GAVGA VVFDV+R
Sbjct: 29 IRQYVSQKFFINYKATIGSDFAIKDLDWDENLRIKLQLWDIAGQERFSCMTRVYYRGAVGAFVVFDVSR 97 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig122119.4549.1 >prot_M-pyrifera_M_contig122119.4549.1 ID=prot_M-pyrifera_M_contig122119.4549.1|Name=mRNA_M-pyrifera_M_contig122119.4549.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp RHAGIIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQEback to top mRNA from alignment at M-pyrifera_M_contig122119:114..527+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig122119.4549.1 ID=mRNA_M-pyrifera_M_contig122119.4549.1|Name=mRNA_M-pyrifera_M_contig122119.4549.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig122119:114..527+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig122119:114..527+ >mRNA_M-pyrifera_M_contig122119.4549.1 ID=mRNA_M-pyrifera_M_contig122119.4549.1|Name=mRNA_M-pyrifera_M_contig122119.4549.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig122119:114..527+ (Macrocystis pyrifera P11B4 male)back to top |