mRNA_M-pyrifera_M_contig122119.4549.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122119.4549.1
Unique NamemRNA_M-pyrifera_M_contig122119.4549.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: A0A7S1YEB3_9EUKA (Ras-related protein Rab (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1YEB3_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 1.710e-26
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query:   13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
            II+R+V + F  +YKSTIG+DF++K IKWD+ +EV LQLWDIAGQERF NMTR YYK AVGA+VVFDVTR
Sbjct:   53 IIKRFVHNIFSTNYKSTIGVDFALKVIKWDDHTEVRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDVTR 122          
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: A0A0B7MYN4_9FUNG (Ras-related protein Rab n=4 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7MYN4_9FUNG)

HSP 1 Score: 102 bits (255), Expect = 1.270e-25
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1
Query:   13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
            IIRRYV + F ++YKSTIG+DF++K I+WD  S V LQLWDIAGQERF NMTR YYK A+GAIVV+DVTR
Sbjct:   24 IIRRYVHNIFSSNYKSTIGVDFALKVIQWDSDSIVRLQLWDIAGQERFGNMTRVYYKEALGAIVVYDVTR 93          
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: A0A7S4MNH4_9EUKA (Ras-related protein Rab n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNH4_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 1.290e-25
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
            II+RYV + F   YKSTIG+DF++K I WDE+S V LQLWDIAGQERF NMTR YYK AVGA VVFDVTR
Sbjct:   40 IIKRYVHNIFSMHYKSTIGVDFALKVINWDENSVVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDVTR 109          
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: UPI0015B0903B (ras-related protein Rab-32 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B0903B)

HSP 1 Score: 102 bits (253), Expect = 4.700e-25
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
            IIRRY    F  +Y+ TIG+DFS+K I WD S+ V LQLWDIAGQERF NMTR YYKGAVGA VVFD+TR
Sbjct:   60 IIRRYAHQLFSENYRVTIGVDFSLKVINWDSSTSVRLQLWDIAGQERFGNMTRVYYKGAVGAFVVFDLTR 129          
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: L8HHC7_ACACA (Ras-related protein Rab n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHC7_ACACA)

HSP 1 Score: 101 bits (251), Expect = 5.270e-25
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
            IIRRYV + +  SYKSTIG+DF++K I WD  + V LQLWDIAGQER+ NMTR YYK AVGA VVFD+TR
Sbjct:   26 IIRRYVNNMYSDSYKSTIGVDFALKEINWDSKTLVRLQLWDIAGQERYGNMTRVYYKEAVGAFVVFDITR 95          
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: UPI001AAD88FA (ras-related protein Rab-32 isoform X2 n=2 Tax=Ranoidea TaxID=30352 RepID=UPI001AAD88FA)

HSP 1 Score: 100 bits (250), Expect = 6.950e-25
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
            IIRRYVQ  F   Y++TIG+DF++K I WD  + V LQLWDIAGQERF NMTR YYK AVGA VVFDVTR
Sbjct:   28 IIRRYVQQLFTEHYRTTIGMDFALKIIDWDNGTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDVTR 97          
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: A0A1S3AHG3_ERIEU (Ras-related protein Rab n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3AHG3_ERIEU)

HSP 1 Score: 100 bits (248), Expect = 1.320e-24
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 1
Query:   13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
            II+RYVQ +F A Y++TIG+DF++K ++WD ++ V LQLWDIAGQERF NMTR YY+ A+GA +VFDVTR
Sbjct:   25 IIKRYVQQRFSAHYRATIGVDFALKVLRWDANTVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTR 94          
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: UPI0008708CE3 (ras-related protein Rab-32 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0008708CE3)

HSP 1 Score: 98.2 bits (243), Expect = 2.030e-24
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
            IIRRYV   +   Y++TIG+DF++K I+WDE++ V LQLWDIAGQERF NMTR Y+K AVGA +VFDVTR
Sbjct:   55 IIRRYVHKAYSEHYRATIGVDFALKVIQWDENTVVRLQLWDIAGQERFGNMTRVYFKEAVGAFIVFDVTR 124          
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: M3XLF6_LATCH (Ras-related protein Rab n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=M3XLF6_LATCH)

HSP 1 Score: 98.6 bits (244), Expect = 2.160e-24
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   13 IIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
            II+RYV   F   Y++TIG+DF++K I WD S+ V LQLWDIAGQERF NMTR YYK AVGA VVFDVTR
Sbjct:   29 IIKRYVHQLFSQHYRATIGVDFALKVINWDSSTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDVTR 98          
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Match: UPI001F043888 (ras-related protein Rab-38-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043888)

HSP 1 Score: 99.8 bits (247), Expect = 2.190e-24
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   16 IRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQERFRNMTRSYYKGAVGAIVVFDVTR 222
            IR+YV  KF  +YK+TIG DF++K++ WDE+  + LQLWDIAGQERF  MTR YY+GAVGA VVFDV+R
Sbjct:   29 IRQYVSQKFFINYKATIGSDFAIKDLDWDENLRIKLQLWDIAGQERFSCMTRVYYRGAVGAFVVFDVSR 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122119.4549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1YEB3_9EUKA1.710e-2671.43Ras-related protein Rab (Fragment) n=1 Tax=Sexangu... [more]
A0A0B7MYN4_9FUNG1.270e-2571.43Ras-related protein Rab n=4 Tax=Mucoraceae TaxID=3... [more]
A0A7S4MNH4_9EUKA1.290e-2572.86Ras-related protein Rab n=1 Tax=Vannella sp. CB-20... [more]
UPI0015B0903B4.700e-2570.00ras-related protein Rab-32 n=1 Tax=Anguilla anguil... [more]
L8HHC7_ACACA5.270e-2568.57Ras-related protein Rab n=1 Tax=Acanthamoeba caste... [more]
UPI001AAD88FA6.950e-2570.00ras-related protein Rab-32 isoform X2 n=2 Tax=Rano... [more]
A0A1S3AHG3_ERIEU1.320e-2464.29Ras-related protein Rab n=1 Tax=Erinaceus europaeu... [more]
UPI0008708CE32.030e-2465.71ras-related protein Rab-32 n=1 Tax=Galendromus occ... [more]
M3XLF6_LATCH2.160e-2468.57Ras-related protein Rab n=2 Tax=Latimeria chalumna... [more]
UPI001F0438882.190e-2465.22ras-related protein Rab-38-like n=1 Tax=Xenia sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122119contigM-pyrifera_M_contig122119:114..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score100.5
Seed ortholog evalue3.4e-19
Seed eggNOG ortholog9365.XP_007535198.1
Preferred nameRAB38
KEGG koko:K07923
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000323,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005829,GO:0006464,GO:0006807,GO:0006810,GO:0006873,GO:0006885,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007264,GO:0008104,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0010256,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019725,GO:0021700,GO:0022607,GO:0023052,GO:0030003,GO:0030004,GO:0030139,GO:0030154,GO:0030641,GO:0030659,GO:0030742,GO:0031090,GO:0031410,GO:0031982,GO:0032438,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033059,GO:0033162,GO:0033363,GO:0034613,GO:0035556,GO:0035639,GO:0035646,GO:0035650,GO:0035651,GO:0036094,GO:0036211,GO:0036461,GO:0042470,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043473,GO:0043476,GO:0043482,GO:0043485,GO:0043687,GO:0044085,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045009,GO:0045184,GO:0045335,GO:0045851,GO:0046907,GO:0048066,GO:0048753,GO:0048757,GO:0048770,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0050931,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0060155,GO:0065007,GO:0065008,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0090382,GO:0090383,GO:0090741,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098771,GO:0098805,GO:1901265,GO:1901363,GO:1901564,GO:1903232
EggNOG free text desc.RAB38, member RAS oncogene family
EggNOG OGs38BWT@33154,3B9BE@33208,3CV0Z@33213,3J5V8@40674,47Z5Q@7711,496HA@7742,KOG4423@1,KOG4423@2759
COG Functional cat.U
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.8336687-CDS-M-pyrifera_M_contig122119:113..1761622815740.8336687-CDS-M-pyrifera_M_contig122119:113..176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122119 114..176 +
1692277547.4843185-CDS-M-pyrifera_M_contig122119:113..1761692277547.4843185-CDS-M-pyrifera_M_contig122119:113..176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122119 114..176 +
1622815740.8611763-CDS-M-pyrifera_M_contig122119:368..5271622815740.8611763-CDS-M-pyrifera_M_contig122119:368..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122119 369..527 +
1692277547.497583-CDS-M-pyrifera_M_contig122119:368..5271692277547.497583-CDS-M-pyrifera_M_contig122119:368..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122119 369..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122119.4549.1prot_M-pyrifera_M_contig122119.4549.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122119 114..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122119.4549.1

>prot_M-pyrifera_M_contig122119.4549.1 ID=prot_M-pyrifera_M_contig122119.4549.1|Name=mRNA_M-pyrifera_M_contig122119.4549.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
RHAGIIRRYVQDKFVASYKSTIGLDFSVKNIKWDESSEVVLQLWDIAGQE
RFRNMTRSYYKGAVGAIVVFDVTR
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mRNA from alignment at M-pyrifera_M_contig122119:114..527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122119.4549.1 ID=mRNA_M-pyrifera_M_contig122119.4549.1|Name=mRNA_M-pyrifera_M_contig122119.4549.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig122119:114..527+ (Macrocystis pyrifera P11B4 male)
CGGCATGCAGGCATCATCCGCCGTTACGTACAGGACAAGTTCGTTGCTAG CTACAAGTCAACAGTACGTTCCTTCGCTCTCGGCCGACAAGATCGCTGGC TGGTCCCTCGCCTGTACAGGAGAACATTGTGGCCGGCGAGTCACAGAGGG GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGCG GAGAGTTGAGAGTGGAGAGGAAAGAGAGAGGGGAAGAAGAACTGACGGGA CGCAGATTGGACTGGACTTCTCGGTGAAGAACATCAAGTGGGATGAGAGC TCGGAGGTTGTGCTGCAGCTGTGGGACATTGCCGGGCAAGAGCGCTTTCG CAACATGACGCGCTCGTACTACAAGGGGGCCGTGGGAGCCATCGTCGTCT TCGATGTCACGCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122119:114..527+

>mRNA_M-pyrifera_M_contig122119.4549.1 ID=mRNA_M-pyrifera_M_contig122119.4549.1|Name=mRNA_M-pyrifera_M_contig122119.4549.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig122119:114..527+ (Macrocystis pyrifera P11B4 male)
CGGCATGCAGGCATCATCCGCCGTTACGTACAGGACAAGTTCGTTGCTAG
CTACAAGTCAACACGGCATGCAGGCATCATCCGCCGTTACGTACAGGACA
AGTTCGTTGCTAGCTACAAGTCAACAATTGGACTGGACTTCTCGGTGAAG
AACATCAAGTGGGATGAGAGCTCGGAGGTTGTGCTGCAGCTGTGGGACAT
TGCCGGGCAAGAGCGCTTTCGCAACATGACGCGCTCGTACTACAAGGGGG
CCGTGGGAGCCATCGTCGTCTTCGATGTCACGCGGATTGGACTGGACTTC
TCGGTGAAGAACATCAAGTGGGATGAGAGCTCGGAGGTTGTGCTGCAGCT
GTGGGACATTGCCGGGCAAGAGCGCTTTCGCAACATGACGCGCTCGTACT
ACAAGGGGGCCGTGGGAGCCATCGTCGTCTTCGATGTCACGCGG
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