mRNA_M-pyrifera_M_contig122060.4547.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122060.4547.1
Unique NamemRNA_M-pyrifera_M_contig122060.4547.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig122060.4547.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.480e-19
Identity = 54/169 (31.95%), Postives = 93/169 (55.03%), Query Frame = 1 
Query:    4 ELRLLLANVRCVGPVAPEDGTLQIAIKTSIDDQYAPLSAQIFAGRNMSTVPFDDVDEMMRALDDLSLNQSVASASSRRNGGSTPMITRSKTYAKAFHSQKFGG----------------------VMSIDQREADYQDENMEFKKVYTILQSRGGFGKSNKEPAFYIRY 444
            +L++L+ +V+ VG    EDGTLQ+A+K  + DQYA L+A +F GRN   +P+D ++ +M ALDD++ N + A+AS R  G  + ++ R +         ++GG                      VM++    A Y DE+ EF +V  + +   GFG+++ +P FY+++
Sbjct:  140 DLKVLVESVQMVG--FAEDGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTATASVRLRGVGS-VLPRGQADMSVSSRGRYGGGGSFSGAKSGSLTPQGSAGARAVMTV----AQYDDESREFWQVSQVSRGNKGFGRNDDDPPFYVQF 301
[Close]
BLAST of mRNA_M-pyrifera_M_contig122060.4547.1 vs. uniprot
Match: A0A6H5KZQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.190e-18
Identity = 50/146 (34.25%), Postives = 85/146 (58.22%), Query Frame = 1 
Query:    4 ELRLLLANVRCVGPVAPEDGTLQIAIKTSIDDQYAPLSAQIFAGRNMSTVPFDDVDEMMRALDDLSLNQSVASASSRRNGGSTPMITRSKTYAKAFHSQKFGGVMSIDQREADYQDENMEFKKVYTILQSRGGFGKSNKEPAFYIR 441
            +L++L+ +V+ VG    EDGTLQ+A+K  + DQYA  +A +F GRN   +P+D ++ +M ALDD++ N + A+AS    G  + M       + +   +  GGV       A Y DE+ EF +V  + +   GFG+++ +P F+++
Sbjct: 1191 DLKVLVESVQMVG--FAEDGTLQVAVKAGVTDQYATCTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTATASVHVRGVGSVMPRGQAGMSVSSRGRYGGGV-------AQYYDESREFWQVSQVSRGNKGFGRNDDDPNFFVQ 1327
[Close]
BLAST of mRNA_M-pyrifera_M_contig122060.4547.1 vs. uniprot
Match: A0A6H5JI85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI85_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.190e-13
Identity = 38/90 (42.22%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    4 ELRLLLANVRCVGPVAPEDGTLQIAIKTSIDDQYAPLSAQIFAGRNMSTVPFDDVDEMMRALDDLSLNQSVASASSRRNG---GSTPMIT 264
            EL++L+ +V+ VG    EDGTLQ+A+K  + DQ+A L+A +F GRN   +P+D++D++M AL+D+  N + A++S+R  G   G+ P +T
Sbjct:  180 ELKVLVESVQLVG--FAEDGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDNLDDLMAALEDMIENTTTATSSTRVRGIGNGTKPGVT 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig122060.4547.1 vs. uniprot
Match: A0A6H5JVS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.790e-12
Identity = 38/103 (36.89%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    4 ELRLLLANVRCVGPVAPEDGTLQIAIKTSIDDQYAPLSAQIFAGRNMSTVPFDDVDEMMRALDDLSLNQSVASASSRRNGGSTPMITRSKTYAKAFHSQKFGG 312
            EL++L+ +V+ VG    EDGTLQ+A+K  + DQ+A L+A +F GRN   +P+D +D++M AL+ +  N + A++S+R  G  +  ++R    A      ++GG
Sbjct:   39 ELKVLVESVQLVG--FAEDGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMAALEYMIENTTTATSSTRVRGVGSA-VSRGPVVASGGTRGRYGG 138
[Close]
BLAST of mRNA_M-pyrifera_M_contig122060.4547.1 vs. uniprot
Match: A0A6H5KFF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.630e-11
Identity = 34/80 (42.50%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    4 ELRLLLANVRCVGPVAPEDGTLQIAIKTSIDDQYAPLSAQIFAGRNMSTVPFDDVDEMMRALDDLSLNQSVASASSRRNG 243
            EL++L+ +V+ VG    EDGTLQ+A+K  + DQ+A L+A +F GRN   +P+D +D++M A +D+  N + A++S+R  G
Sbjct:  470 ELKVLVESVQLVG--FAEDGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMVAFEDMIENTTTATSSTRVRG 547
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122060.4547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KNG1_9PHAE1.480e-1931.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZQ9_9PHAE1.190e-1834.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI85_9PHAE2.190e-1342.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS0_9PHAE2.790e-1236.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFF1_9PHAE2.630e-1142.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122060contigM-pyrifera_M_contig122060:49..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size454
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.7326875-CDS-M-pyrifera_M_contig122060:48..4981622815740.7326875-CDS-M-pyrifera_M_contig122060:48..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122060 49..498 +
1692277547.4344316-CDS-M-pyrifera_M_contig122060:48..4981692277547.4344316-CDS-M-pyrifera_M_contig122060:48..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122060 49..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122060.4547.1prot_M-pyrifera_M_contig122060.4547.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122060 49..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122060.4547.1

>prot_M-pyrifera_M_contig122060.4547.1 ID=prot_M-pyrifera_M_contig122060.4547.1|Name=mRNA_M-pyrifera_M_contig122060.4547.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
AELRLLLANVRCVGPVAPEDGTLQIAIKTSIDDQYAPLSAQIFAGRNMST
VPFDDVDEMMRALDDLSLNQSVASASSRRNGGSTPMITRSKTYAKAFHSQ
KFGGVMSIDQREADYQDENMEFKKVYTILQSRGGFGKSNKEPAFYIRYDS
back to top

mRNA from alignment at M-pyrifera_M_contig122060:49..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122060.4547.1 ID=mRNA_M-pyrifera_M_contig122060.4547.1|Name=mRNA_M-pyrifera_M_contig122060.4547.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=452bp|location=Sequence derived from alignment at M-pyrifera_M_contig122060:49..500+ (Macrocystis pyrifera P11B4 male)
GCCGAGTTGAGGCTTTTATTAGCGAACGTAAGGTGTGTGGGTCCGGTCGC
CCCGGAGGACGGTACTTTACAAATAGCAATAAAAACGAGCATTGACGACC
AGTACGCACCCCTGAGTGCACAGATCTTTGCAGGTAGAAATATGAGCACG
GTACCGTTTGACGACGTGGATGAAATGATGAGAGCTCTGGATGACCTTTC
ATTAAACCAGTCGGTGGCTAGTGCGTCATCTAGGAGAAATGGAGGTAGTA
CGCCAATGATAACGAGGTCAAAAACGTACGCAAAAGCCTTCCATAGTCAG
AAGTTTGGAGGAGTCATGTCCATAGATCAGAGAGAGGCTGATTATCAGGA
TGAGAATATGGAATTTAAGAAGGTTTATACCATATTACAGAGCCGAGGGG
GCTTCGGAAAAAGTAATAAAGAACCTGCATTCTATATCAGATATGATTCG
AG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122060:49..500+

>mRNA_M-pyrifera_M_contig122060.4547.1 ID=mRNA_M-pyrifera_M_contig122060.4547.1|Name=mRNA_M-pyrifera_M_contig122060.4547.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig122060:49..500+ (Macrocystis pyrifera P11B4 male)
GCCGAGTTGAGGCTTTTATTAGCGAACGTAAGGTGTGTGGGTCCGGTCGC
CCCGGAGGACGGTACTTTACAAATAGCAATAAAAACGAGCATTGACGACC
AGTACGCACCCCTGAGTGCACAGATCTTTGCAGGTAGAAATATGAGCACG
GTACCGTTTGACGACGTGGATGAAATGATGAGAGCTCTGGATGACCTTTC
ATTAAACCAGTCGGTGGCTAGTGCGTCATCTAGGAGAAATGGAGGTAGTA
CGCCAATGATAACGAGGTCAAAAACGTACGCAAAAGCCTTCCATAGTCAG
AAGTTTGGAGGAGTCATGTCCATAGATCAGAGAGAGGCTGATTATCAGGA
TGAGAATATGGAATTTAAGAAGGTTTATACCATATTACAGAGCCGAGGGG
GCTTCGGAAAAAGTAATAAAGAACCTGCATTCTATATCAGATATGATTCG
GCCGAGTTGAGGCTTTTATTAGCGAACGTAAGGTGTGTGGGTCCGGTCGC
CCCGGAGGACGGTACTTTACAAATAGCAATAAAAACGAGCATTGACGACC
AGTACGCACCCCTGAGTGCACAGATCTTTGCAGGTAGAAATATGAGCACG
GTACCGTTTGACGACGTGGATGAAATGATGAGAGCTCTGGATGACCTTTC
ATTAAACCAGTCGGTGGCTAGTGCGTCATCTAGGAGAAATGGAGGTAGTA
CGCCAATGATAACGAGGTCAAAAACGTACGCAAAAGCCTTCCATAGTCAG
AAGTTTGGAGGAGTCATGTCCATAGATCAGAGAGAGGCTGATTATCAGGA
TGAGAATATGGAATTTAAGAAGGTTTATACCATATTACAGAGCCGAGGGG
GCTTCGGAAAAAGTAATAAAGAACCTGCATTCTATATCAGATATGATTCG
back to top