mRNA_M-pyrifera_M_contig122051.4543.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122051.4543.1
Unique NamemRNA_M-pyrifera_M_contig122051.4543.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122051.4543.1 vs. uniprot
Match: UPI0019AD8EA7 (Uncharacterized protein n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI0019AD8EA7)

HSP 1 Score: 84.3 bits (207), Expect = 2.030e-17
Identity = 59/126 (46.83%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    1 MGIEATVVLYLVLGISVATAMVLRDDA-STAAAWVRGLSACLFWPLYVPLLLSHPDSDD-----MLERDPVEEAVSFDSLDEMAVAINCVETELHEALDSLDGWAELTLAGELFRIDELQTAWRSQ 360
            MG+  TV  YLV GI VA A+ + D A S      R L+A LFWPLY+P+LL+   +++     ML++    +       DEMA AI  VE EL  AL SLDGWAE  LA E  R  EL+TAWR Q
Sbjct:    1 MGLGVTVCFYLVFGIGVAAALWIGDAAGSQNDRLFRVLTAPLFWPLYLPVLLTPRPAENCSAGLMLQK----QQPXXXXXDEMATAIAQVEVELDTALRSLDGWAEDVLAAEHDRFAELRTAWRQQ 122          
BLAST of mRNA_M-pyrifera_M_contig122051.4543.1 vs. uniprot
Match: A0A2D6SSH1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SSH1_9PLAN)

HSP 1 Score: 80.1 bits (196), Expect = 7.140e-16
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    1 MGIEATVVLYLVLGISVATAMVLRDDASTAAAW-VRGLSACLFWPLYVPLLLSHPDS---DDMLERDPVEEAVSFDSLDEMAVAINCVETELHEALDSLDGWAELTLAGELFRIDELQTAWRSQ 360
            M    T++ YL++G+ V  A++LRD  S       + ++A LFWPL+VP+LL          +  R P   + + D    M+VAI  VE EL  AL SL+GW+E  LAGE  R  EL+ AWR+Q
Sbjct:    1 MNFAVTILFYLLVGLGVGVAVLLRDRQSALPERSFQTVAAVLFWPLFVPVLLQRVSGHWESSVASRSPTNTSPTSDR---MSVAITQVEAELDAALKSLNGWSETILAGEHDRFAELRNAWRAQ 121          
BLAST of mRNA_M-pyrifera_M_contig122051.4543.1 vs. uniprot
Match: A0A5K7XLZ0_9BACT (Uncharacterized protein n=1 Tax=Lacipirellula parvula TaxID=2650471 RepID=A0A5K7XLZ0_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 1.160e-13
Identity = 54/130 (41.54%), Postives = 68/130 (52.31%), Query Frame = 1
Query:   16 TVVLYLVLGISVATAMVLR-------DDASTA------AAWVRGLSACLFWPLYVPLLLSHPDSDDMLERD--PVEEAVSFDSLDEMAVAINCVETELHEALDSLDGWAELTLAGELFRIDELQTAWRSQ 360
            T + YLV G+ VA A  L+       DD  +       A  +R  SACLFWP Y+P+LLS     +   R   P EE+      D +A AI  VE EL  AL  LDGWAE  L  E  R+ EL++AWR+Q
Sbjct:    6 TTIFYLVFGVVVAVASYLQQGKPNSDDDGESVRESFGVALAMRLGSACLFWPFYLPMLLSAGQGGEEEARSNAPREESDGPIECDALAAAIAQVEAELDAALQGLDGWAEDVLNCEERRLVELRSAWRAQ 135          
BLAST of mRNA_M-pyrifera_M_contig122051.4543.1 vs. uniprot
Match: UPI00199AEC11 (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI00199AEC11)

HSP 1 Score: 69.7 bits (169), Expect = 4.280e-12
Identity = 50/121 (41.32%), Postives = 61/121 (50.41%), Query Frame = 1
Query:    1 MGIEATVVLYLVLGISVATAMVLRDDA-STAAAWVRGLSACLFWPLYVPLLLSHPDSDDMLERDPVEEAVSFDSLDEMAVAINCVETELHEALDSLDGWAELTLAGELFRIDELQTAWRSQ 360
            M    T + Y ++G  VA A+ + D   S    W R L+A LFWPLY+PLLL  P S  +    P     S    DE+A  I  VETE   AL SL   A+  L  E  R+ EL  AWRSQ
Sbjct:    1 MNFSITAIFYGLVGAGVAVALFVSDSTGSRHERWFRVLTAFLFWPLYLPLLL-RPTSPSVPTTQP-----SAAPSDELAAQITQVETEFDVALKSLSVGADTALLLESDRVGELPAAWRSQ 115          
BLAST of mRNA_M-pyrifera_M_contig122051.4543.1 vs. uniprot
Match: A0A3L7SHK5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7SHK5_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-8
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   97 WVRGLSACLFWPLYVPLLLSHPDSDDMLERDPVEEAVSFDSLDEMAVAINCVETELHEALDSLDGWAELTLAGELFRIDELQTAWRSQ 360
            W   ++A LFWPLY+PLLL +      LE      A   +S D M+  IN VE EL  A+ SL GWAE   + E  RI EL+T  R+Q
Sbjct:   46 WFSVVTAPLFWPLYLPLLLVNRS----LETPERRVAPRRNSRDAMSQFINQVERELDRAMQSLHGWAEDLFSSEQPRIMELKTTLRNQ 129          
BLAST of mRNA_M-pyrifera_M_contig122051.4543.1 vs. uniprot
Match: A0A4V0XNL0_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A4V0XNL0_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 3.410e-8
Identity = 50/123 (40.65%), Postives = 65/123 (52.85%), Query Frame = 1
Query:    1 MGIEATVVLYLVLGISVATAMVLRDDASTAAAWVRG---LSACLFWPLYVPLLLSHPDSDDMLERDPVEEAVSFDSLDEMAVAINCVETELHEALDSLDGWAELTLAGELFRIDELQTAWRSQ 360
            M    T + Y ++G  VA A+ L D  ST + + R    L+A LFWPLY+PLLL  P    +    P+ +  +  S DE+A  I  VETEL  AL SL+   +  L  EL RI  LQT  R Q
Sbjct:    1 MNASITAIFYGLVGAGVAVALFLSD--STGSRYERSFRVLTAFLFWPLYLPLLL-RPTGPSV----PITQPSAAPS-DELAAQIAQVETELGRALQSLNVEQDSALRPELDRISALQTECRMQ 115          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122051.4543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI0019AD8EA72.030e-1746.83Uncharacterized protein n=1 Tax=Candidatus Sacchar... [more]
A0A2D6SSH1_9PLAN7.140e-1640.32Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A5K7XLZ0_9BACT1.160e-1341.54Uncharacterized protein n=1 Tax=Lacipirellula parv... [more]
UPI00199AEC114.280e-1241.32Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3L7SHK5_9BACT2.000e-844.32Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A4V0XNL0_9BACT3.410e-840.65Uncharacterized protein n=2 Tax=Planctomycetes Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122051contigM-pyrifera_M_contig122051:172..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.5957913-CDS-M-pyrifera_M_contig122051:171..5311622815740.5957913-CDS-M-pyrifera_M_contig122051:171..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122051 172..531 +
1692277547.3791761-CDS-M-pyrifera_M_contig122051:171..5311692277547.3791761-CDS-M-pyrifera_M_contig122051:171..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122051 172..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122051.4543.1prot_M-pyrifera_M_contig122051.4543.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122051 172..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122051.4543.1

>prot_M-pyrifera_M_contig122051.4543.1 ID=prot_M-pyrifera_M_contig122051.4543.1|Name=mRNA_M-pyrifera_M_contig122051.4543.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MGIEATVVLYLVLGISVATAMVLRDDASTAAAWVRGLSACLFWPLYVPLL
LSHPDSDDMLERDPVEEAVSFDSLDEMAVAINCVETELHEALDSLDGWAE
LTLAGELFRIDELQTAWRSQ
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mRNA from alignment at M-pyrifera_M_contig122051:172..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122051.4543.1 ID=mRNA_M-pyrifera_M_contig122051.4543.1|Name=mRNA_M-pyrifera_M_contig122051.4543.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig122051:172..531+ (Macrocystis pyrifera P11B4 male)
ATGGGAATTGAAGCAACAGTCGTGCTGTATCTGGTCTTGGGCATCAGCGT GGCGACCGCGATGGTCTTGCGAGACGACGCCAGCACAGCAGCGGCGTGGG TTCGAGGACTGTCCGCTTGTCTCTTCTGGCCGCTCTACGTACCGCTGTTA CTGAGTCATCCTGATTCTGATGACATGCTCGAACGTGATCCGGTGGAAGA GGCAGTCTCTTTCGACTCACTCGATGAGATGGCCGTCGCCATCAATTGTG TCGAGACGGAGCTGCACGAAGCTCTCGACAGCCTCGATGGCTGGGCCGAA CTCACACTCGCCGGTGAGTTGTTCCGGATCGACGAACTCCAAACTGCGTG GAGGTCACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122051:172..531+

>mRNA_M-pyrifera_M_contig122051.4543.1 ID=mRNA_M-pyrifera_M_contig122051.4543.1|Name=mRNA_M-pyrifera_M_contig122051.4543.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig122051:172..531+ (Macrocystis pyrifera P11B4 male)
ATGGGAATTGAAGCAACAGTCGTGCTGTATCTGGTCTTGGGCATCAGCGT
GGCGACCGCGATGGTCTTGCGAGACGACGCCAGCACAGCAGCGGCGTGGG
TTCGAGGACTGTCCGCTTGTCTCTTCTGGCCGCTCTACGTACCGCTGTTA
CTGAGTCATCCTGATTCTGATGACATGCTCGAACGTGATCCGGTGGAAGA
GGCAGTCTCTTTCGACTCACTCGATGAGATGGCCGTCGCCATCAATTGTG
TCGAGACGGAGCTGCACGAAGCTCTCGACAGCCTCGATGGCTGGGCCGAA
CTCACACTCGCCGGTGAGTTGTTCCGGATCGACGAACTCCAAACTGCGTG
GAGGTCACAGATGGGAATTGAAGCAACAGTCGTGCTGTATCTGGTCTTGG
GCATCAGCGTGGCGACCGCGATGGTCTTGCGAGACGACGCCAGCACAGCA
GCGGCGTGGGTTCGAGGACTGTCCGCTTGTCTCTTCTGGCCGCTCTACGT
ACCGCTGTTACTGAGTCATCCTGATTCTGATGACATGCTCGAACGTGATC
CGGTGGAAGAGGCAGTCTCTTTCGACTCACTCGATGAGATGGCCGTCGCC
ATCAATTGTGTCGAGACGGAGCTGCACGAAGCTCTCGACAGCCTCGATGG
CTGGGCCGAACTCACACTCGCCGGTGAGTTGTTCCGGATCGACGAACTCC
AAACTGCGTGGAGGTCACAG
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