mRNA_M-pyrifera_M_contig122030.4539.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122030.4539.1
Unique NamemRNA_M-pyrifera_M_contig122030.4539.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Match: A0A5A8CV76_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CV76_CAFRO)

HSP 1 Score: 127 bits (319), Expect = 3.810e-31
Identity = 69/132 (52.27%), Postives = 102/132 (77.27%), Query Frame = 1
Query:   10 KEQKRLEAAVVKEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLIRRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQIEAYEGNLKQKKKQLTALKAELEGYKRLVDEHRRAI 405
            +EQ+RLEAA+ +E+A+  +L +EL+RPVNVHRWRA++V DPER++L++RV +LQ+R +EA   + ++D AI+EKE+LY E++E L RQPG EV ++  A   +LK K+KQL ++K E E  K LVDE +RA+
Sbjct:  677 REQRRLEAALNRERARIRSLSDELQRPVNVHRWRAMQVVDPERYKLVQRVLSLQRRLLEADEKVAQRDLAIQEKERLYVEMREALARQPGEEVEEETAALRADLKAKQKQLRSMKEERETQKALVDELKRAV 808          
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Match: D8LF77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF77_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.950e-29
Identity = 70/143 (48.95%), Postives = 96/143 (67.13%), Query Frame = 1
Query:   22 RLEAAVVKEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLIRRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQIEAYEGNLKQKKKQLTALKAELEGYKRLVDEHRRAIARATEKTTKVEDEWV 450
            +LE  +++E+AK  AL+EEL+ P+NVHRWR LE +DPER+ L+R+  +LQ+  V    +  KKD  I+EKEKLY ELK +LGRQPG EV +Q+  Y+ NLK K KQ+ A++AEL  YK+ VD  +  I  A E    +   WV
Sbjct:  677 KLEKDLMRERAKMTALVEELELPLNVHRWRKLESSDPERYDLVRKAQSLQRNLVSKTESAVKKDLLIQEKEKLYIELKTILGRQPGPEVAEQLAVYQENLKHKVKQMRAMEAELGMYKQQVDLFKSDIEAANEAMRALRQRWV 819          
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Match: A0A6H5L722_9PHAE (FGGY_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L722_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.060e-29
Identity = 70/143 (48.95%), Postives = 96/143 (67.13%), Query Frame = 1
Query:   22 RLEAAVVKEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLIRRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQIEAYEGNLKQKKKQLTALKAELEGYKRLVDEHRRAIARATEKTTKVEDEWV 450
            +LE  +++E+AK  AL+EEL+ P+NVHRWR LE +DPER+ L+R+  +LQ+  V    +  KKD  I+EKEKLY ELK +LGRQPG EV +Q+  Y+ NLK K KQ+ A++AEL  YK+ VD  +  I  A E    +   WV
Sbjct:  333 KLEKDLMRERAKMTALVEELELPLNVHRWRKLESSDPERYDLVRKAQSLQRNLVSKTESAVKKDLLIQEKEKLYIELKTILGRQPGPEVAEQLAVYQENLKHKVKQMRAMEAELGMYKQQVDLFKSDIEAANEAMRALRQRWV 475          
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Match: A0A7S2HFF3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HFF3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.420e-28
Identity = 60/136 (44.12%), Postives = 92/136 (67.65%), Query Frame = 1
Query:   43 KEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLIRRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQIEAYEGNLKQKKKQLTALKAELEGYKRLVDEHRRAIARATEKTTKVEDEWV 450
            +EK+K+ AL EEL  P+NVHRW ALE +DP+RF +I+++  LQKR +       +KD  ++EKE+LY ELK VLGRQP +E+G+Q+  ++ NLK+K   L A++ EL  YK+  + ++  I    EK T+++  W+
Sbjct:  159 REKSKSKALSEELHVPLNVHRWWALESSDPQRFEMIKKLQALQKRLIAKTEEAVEKDLLVQEKERLYKELKNVLGRQPSSEIGEQLAVFQENLKEKNAHLAAMEGELAMYKKQEESYKHGITGIAEKLTEMKTTWI 294          
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Match: A0A7S3XSH5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSH5_HETAK)

HSP 1 Score: 112 bits (280), Expect = 8.560e-28
Identity = 62/113 (54.87%), Postives = 82/113 (72.57%), Query Frame = 1
Query:   22 RLEAAVVKEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLIRRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQIEAYEGNLKQKKKQLTALKAE 360
            RLE  ++ E+ K  AL EEL +P+NVHRWR LE +DP+RF LIR++ TLQK+ +E    +  KD  I+EKEKLY ELK +L RQPG EVG+Q+  Y+ NLKQK KQ+ A++ E
Sbjct:   61 RLETELLAERNKIKALTEELDQPLNVHRWRQLESSDPQRFELIRKIQTLQKQLIEKTEDVVAKDLLIQEKEKLYVELKNILNRQPGPEVGEQLGVYQQNLKQKVKQMKAMEHE 173          
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Match: A0A2P4XCR9_9STRA (MBO2, coiled coil flagellar protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4XCR9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.560e-27
Identity = 64/143 (44.76%), Postives = 94/143 (65.73%), Query Frame = 1
Query:   22 RLEAAVVKEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLIRRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQIEAYEGNLKQKKKQLTALKAELEGYKRLVDEHRRAIARATEKTTKVEDEWV 450
            RLE  +++EK K  AL EEL  P+NVHRWR LE +DP+RF +IR++  +QK+ +        KD  I EKEKLY ELK +L RQPGAEV +Q+  Y+  LK K+ Q+  ++ EL+ YK  V+E+RR +    ++  +++ EW+
Sbjct:  357 RLEKELLQEKTKIRALSEELDHPLNVHRWRKLEGSDPKRFEMIRKLQAMQKKLIRKYEETTIKDLLILEKEKLYVELKTILARQPGAEVAEQLVVYKETLKGKQNQMKQMEDELQMYKMQVNEYRRDLGHLEKEKQQIQQEWI 499          
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Match: F0YHE8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHE8_AURAN)

HSP 1 Score: 115 bits (288), Expect = 5.550e-27
Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = 1
Query:   25 LEAAVVKEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLIRRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQIEAYEGNLKQKKKQLTALKAELEGYKRLVDEHRRAIARATEKTTKVEDEWV 450
            LE+ +++E+ K  AL EEL+RP+NVHRWR LE +DP+RF +I+++  LQKR ++    + +K+A I+EKE+LY ELK VLGRQPG EV +Q+  YE +L++K  Q+ A+ AEL+ YK+ V E R  I         ++++W+
Sbjct:  660 LESDLLQERNKIKALQEELERPLNVHRWRMLESSDPQRFEMIKKIQGLQKRIIQKTEDVFEKEARIQEKERLYIELKNVLGRQPGPEVAEQLALYESSLREKNVQMKAMTAELDMYKQQVAEFRGDIDGLAHDLDTLKEKWL 801          
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Match: H3GQE1_PHYRM (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=H3GQE1_PHYRM)

HSP 1 Score: 115 bits (287), Expect = 7.650e-27
Identity = 65/143 (45.45%), Postives = 94/143 (65.73%), Query Frame = 1
Query:   22 RLEAAVVKEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLIRRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQIEAYEGNLKQKKKQLTALKAELEGYKRLVDEHRRAIARATEKTTKVEDEWV 450
            RLE  +++EK K  AL EEL  P+NVHRWR LE +DP+RF +IR++  +QK+ +        KD  I EKEKLY ELK +L RQPGAEV +Q+  Y+  LK K  Q+  ++ EL+ YK  V+E+RR + +  ++  +++ EWV
Sbjct:  713 RLEKELLQEKTKIRALSEELDHPLNVHRWRKLEGSDPKRFEMIRKLQAMQKKLIRKYEETTIKDLLILEKEKLYVELKTILARQPGAEVAEQLVVYKETLKGKHNQMKQMEDELQMYKMQVNEYRRDLGQLEKEKQQIQQEWV 855          
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Match: A0A0K6S8X7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6S8X7_9ALVE)

HSP 1 Score: 107 bits (267), Expect = 1.920e-26
Identity = 61/132 (46.21%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   22 RLEAAVVKEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLIRRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQIEAYEGNLKQKKKQLTALKAELEGYKRLVDEHRRAIARAT 417
            R E  V  E+ K  AL EEL+ P+NVHRWR LE  DP  + ++++V TLQ+R ++    + +KD  I+EKEKLY ELK +L RQPG EV +Q+  Y+ N+K K KQ+ A+ +EL  Y   V E++  I R T
Sbjct:    6 RRELCVSAERTKVKALSEELENPMNVHRWRKLEGADPATYEMVQKVKTLQRRLIQKTEEVVEKDLQIQEKEKLYVELKNILARQPGPEVAEQLTIYQQNMKDKTKQMKAMASELNMYHAQVGEYKDEIERLT 137          
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Match: A0A225VD23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VD23_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.640e-26
Identity = 63/143 (44.06%), Postives = 94/143 (65.73%), Query Frame = 1
Query:   22 RLEAAVVKEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLIRRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQIEAYEGNLKQKKKQLTALKAELEGYKRLVDEHRRAIARATEKTTKVEDEWV 450
            RLE  +++EK K  AL EEL  P+NVHRWR LE +DP+RF +IR++  +QK+ +        KD  I EKEKLY ELK +L RQPGAEV +Q+  Y+  LK K+ Q+  ++ EL+ YK  V+E+R  + +  ++  +++ EW+
Sbjct:  704 RLEKELLQEKTKIRALSEELDHPLNVHRWRKLEGSDPKRFEMIRKLQAMQKKLIRKYEETTIKDLLILEKEKLYVELKTILARQPGAEVAEQLVVYKETLKGKQNQMKQMEDELQMYKMQVNEYRNDLTQLDKEKQQIQQEWI 846          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122030.4539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CV76_CAFRO3.810e-3152.27Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
D8LF77_ECTSI3.950e-2948.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L722_9PHAE4.060e-2948.95FGGY_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S2HFF3_9STRA5.420e-2844.12Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XSH5_HETAK8.560e-2854.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2P4XCR9_9STRA4.560e-2744.76MBO2, coiled coil flagellar protein n=2 Tax=Phytop... [more]
F0YHE8_AURAN5.550e-2745.77Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
H3GQE1_PHYRM7.650e-2745.45Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A0K6S8X7_9ALVE1.920e-2646.21Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A225VD23_9STRA2.640e-2644.06Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122030contigM-pyrifera_M_contig122030:14..469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue7.7e-26
Seed eggNOG ortholog2880.D8LF77
Preferred nameFAP189
Hectar predicted targeting categoryother localisation
GOsGO:0001539,GO:0006928,GO:0008150,GO:0009987,GO:0040011,GO:0048870,GO:0051179,GO:0051674,GO:0060285
EggNOG OGs28HHA@1,2QPV7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.4514625-CDS-M-pyrifera_M_contig122030:13..4691622815740.4514625-CDS-M-pyrifera_M_contig122030:13..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122030 14..469 +
1692277547.316551-CDS-M-pyrifera_M_contig122030:13..4691692277547.316551-CDS-M-pyrifera_M_contig122030:13..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122030 14..469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122030.4539.1prot_M-pyrifera_M_contig122030.4539.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122030 14..469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122030.4539.1

>prot_M-pyrifera_M_contig122030.4539.1 ID=prot_M-pyrifera_M_contig122030.4539.1|Name=mRNA_M-pyrifera_M_contig122030.4539.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
ALVKEQKRLEAAVVKEKAKAAALLEELKRPVNVHRWRALEVTDPERFRLI
RRVATLQKRAVEAQAAMEKKDAAIREKEKLYGELKEVLGRQPGAEVGDQI
EAYEGNLKQKKKQLTALKAELEGYKRLVDEHRRAIARATEKTTKVEDEWV
TE
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mRNA from alignment at M-pyrifera_M_contig122030:14..469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122030.4539.1 ID=mRNA_M-pyrifera_M_contig122030.4539.1|Name=mRNA_M-pyrifera_M_contig122030.4539.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig122030:14..469+ (Macrocystis pyrifera P11B4 male)
GCCTTGGTGAAGGAGCAGAAGAGGCTTGAGGCGGCGGTGGTGAAGGAGAA GGCGAAAGCGGCAGCATTGTTAGAGGAGTTGAAACGGCCTGTGAACGTGC ATCGCTGGCGAGCGTTGGAAGTGACTGATCCCGAGAGGTTTCGCTTGATT CGAAGAGTGGCGACATTGCAGAAACGGGCAGTGGAAGCACAAGCGGCGAT GGAGAAGAAGGATGCCGCGATTCGAGAGAAGGAAAAGCTGTATGGGGAGT TGAAGGAGGTGCTGGGACGTCAACCGGGGGCAGAAGTTGGCGACCAAATT GAGGCGTACGAAGGCAATTTGAAGCAAAAGAAGAAACAGCTGACAGCGCT CAAGGCAGAGCTGGAGGGATACAAGCGACTGGTCGATGAGCACAGGAGGG CGATTGCCAGGGCAACGGAGAAGACCACAAAGGTCGAAGACGAATGGGTC ACGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122030:14..469+

>mRNA_M-pyrifera_M_contig122030.4539.1 ID=mRNA_M-pyrifera_M_contig122030.4539.1|Name=mRNA_M-pyrifera_M_contig122030.4539.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig122030:14..469+ (Macrocystis pyrifera P11B4 male)
GCCTTGGTGAAGGAGCAGAAGAGGCTTGAGGCGGCGGTGGTGAAGGAGAA
GGCGAAAGCGGCAGCATTGTTAGAGGAGTTGAAACGGCCTGTGAACGTGC
ATCGCTGGCGAGCGTTGGAAGTGACTGATCCCGAGAGGTTTCGCTTGATT
CGAAGAGTGGCGACATTGCAGAAACGGGCAGTGGAAGCACAAGCGGCGAT
GGAGAAGAAGGATGCCGCGATTCGAGAGAAGGAAAAGCTGTATGGGGAGT
TGAAGGAGGTGCTGGGACGTCAACCGGGGGCAGAAGTTGGCGACCAAATT
GAGGCGTACGAAGGCAATTTGAAGCAAAAGAAGAAACAGCTGACAGCGCT
CAAGGCAGAGCTGGAGGGATACAAGCGACTGGTCGATGAGCACAGGAGGG
CGATTGCCAGGGCAACGGAGAAGACCACAAAGGTCGAAGACGAATGGGTC
ACGGAAGCCTTGGTGAAGGAGCAGAAGAGGCTTGAGGCGGCGGTGGTGAA
GGAGAAGGCGAAAGCGGCAGCATTGTTAGAGGAGTTGAAACGGCCTGTGA
ACGTGCATCGCTGGCGAGCGTTGGAAGTGACTGATCCCGAGAGGTTTCGC
TTGATTCGAAGAGTGGCGACATTGCAGAAACGGGCAGTGGAAGCACAAGC
GGCGATGGAGAAGAAGGATGCCGCGATTCGAGAGAAGGAAAAGCTGTATG
GGGAGTTGAAGGAGGTGCTGGGACGTCAACCGGGGGCAGAAGTTGGCGAC
CAAATTGAGGCGTACGAAGGCAATTTGAAGCAAAAGAAGAAACAGCTGAC
AGCGCTCAAGGCAGAGCTGGAGGGATACAAGCGACTGGTCGATGAGCACA
GGAGGGCGATTGCCAGGGCAACGGAGAAGACCACAAAGGTCGAAGACGAA
TGGGTCACGGAA
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