mRNA_M-pyrifera_M_contig122022.4536.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122022.4536.1
Unique NamemRNA_M-pyrifera_M_contig122022.4536.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122022.4536.1 vs. uniprot
Match: A0A812M4Q7_9DINO (Ppp1r12a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812M4Q7_9DINO)

HSP 1 Score: 73.2 bits (178), Expect = 4.190e-14
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 EKFVFAAAGGNPDEVSAMLGRDWNLVHAHDRDGHTALHAAAALDHATVVRLLLERGASASVQ 186
            E F+FA A G  + V  ML   W+L+HA DRDGHTALHAAAA++HA +   LL+RGA  + Q
Sbjct:  104 EAFIFACASGELEPVRRMLDTSWDLIHAIDRDGHTALHAAAAMNHADLCSFLLDRGAKVNTQ 165
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BLAST of mRNA_M-pyrifera_M_contig122022.4536.1 vs. uniprot
Match: A0A5A8E1V2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E1V2_CAFRO)

HSP 1 Score: 73.6 bits (179), Expect = 4.930e-14
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 EKFVFAAAGGNPDEVSAMLGRDWNLVHAHDRDGHTALHAAAALDHATVVRLLLERGASASVQ 186
            E+FVFAAA G  D V A +  D+ L+HA DRDGHTAL AAAA D   V+RLL ERGA+ +VQ
Sbjct:  109 ERFVFAAASGQLDVVDAAIVADFQLIHAVDRDGHTALMAAAATDQEAVIRLLAERGANMNVQ 170
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BLAST of mRNA_M-pyrifera_M_contig122022.4536.1 vs. uniprot
Match: A0A482RF77_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RF77_9ARCH)

HSP 1 Score: 57.0 bits (136), Expect = 2.640e-8
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   40 EVSAMLGRDWNLVHAHDRDGHTALHAAAALDHATVVRLLLERGASASVQ 186
            +V+  +  +W+ VH  DRDGHTALHAAA+  H  V  LLL RGA+ SVQ
Sbjct:  105 QVTRAIDSNWDFVHIIDRDGHTALHAAASQGHVNVATLLLSRGANPSVQ 153
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BLAST of mRNA_M-pyrifera_M_contig122022.4536.1 vs. uniprot
Match: A0A812L370_9DINO (TrpG protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812L370_9DINO)

HSP 1 Score: 57.8 bits (138), Expect = 3.290e-8
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   40 EVSAMLGRDWNLVHAHDRDGHTALHAAAALDHATVVRLLLERGASASVQ 186
            +V A +  D+ L+HA DRDGHTAL AAAA D   V+RLL ERGA+ +VQ
Sbjct:  452 QVDAAIVADFQLIHAVDRDGHTALMAAAATDQEAVIRLLAERGANMNVQ 500
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122022.4536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A812M4Q7_9DINO4.190e-1454.84Ppp1r12a protein n=1 Tax=Symbiodinium sp. KB8 TaxI... [more]
A0A5A8E1V2_CAFRO4.930e-1461.29Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A482RF77_9ARCH2.640e-855.10Ankyrin repeat domain-containing protein n=1 Tax=a... [more]
A0A812L370_9DINO3.290e-859.18TrpG protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122022contigM-pyrifera_M_contig122022:339..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.3468122-CDS-M-pyrifera_M_contig122022:338..5241622815740.3468122-CDS-M-pyrifera_M_contig122022:338..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122022 339..524 +
1692277547.2794378-CDS-M-pyrifera_M_contig122022:338..5241692277547.2794378-CDS-M-pyrifera_M_contig122022:338..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122022 339..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122022.4536.1prot_M-pyrifera_M_contig122022.4536.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122022 339..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122022.4536.1

>prot_M-pyrifera_M_contig122022.4536.1 ID=prot_M-pyrifera_M_contig122022.4536.1|Name=mRNA_M-pyrifera_M_contig122022.4536.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
EKFVFAAAGGNPDEVSAMLGRDWNLVHAHDRDGHTALHAAAALDHATVVR
LLLERGASASVQ
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mRNA from alignment at M-pyrifera_M_contig122022:339..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122022.4536.1 ID=mRNA_M-pyrifera_M_contig122022.4536.1|Name=mRNA_M-pyrifera_M_contig122022.4536.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig122022:339..524+ (Macrocystis pyrifera P11B4 male)
GAGAAGTTTGTGTTCGCGGCAGCTGGGGGCAATCCCGACGAAGTTTCGGC
GATGTTGGGGAGGGACTGGAATCTGGTGCATGCCCACGACAGAGACGGAC
ACACGGCGCTGCATGCTGCCGCTGCTCTGGATCACGCTACCGTGGTGCGA
CTGCTGTTGGAGCGAGGGGCAAGCGCTTCGGTGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122022:339..524+

>mRNA_M-pyrifera_M_contig122022.4536.1 ID=mRNA_M-pyrifera_M_contig122022.4536.1|Name=mRNA_M-pyrifera_M_contig122022.4536.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig122022:339..524+ (Macrocystis pyrifera P11B4 male)
GAGAAGTTTGTGTTCGCGGCAGCTGGGGGCAATCCCGACGAAGTTTCGGC
GATGTTGGGGAGGGACTGGAATCTGGTGCATGCCCACGACAGAGACGGAC
ACACGGCGCTGCATGCTGCCGCTGCTCTGGATCACGCTACCGTGGTGCGA
CTGCTGTTGGAGCGAGGGGCAAGCGCTTCGGTGCAGGAGAAGTTTGTGTT
CGCGGCAGCTGGGGGCAATCCCGACGAAGTTTCGGCGATGTTGGGGAGGG
ACTGGAATCTGGTGCATGCCCACGACAGAGACGGACACACGGCGCTGCAT
GCTGCCGCTGCTCTGGATCACGCTACCGTGGTGCGACTGCTGTTGGAGCG
AGGGGCAAGCGCTTCGGTGCAG
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