mRNA_M-pyrifera_M_contig122004.4530.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122004.4530.1
Unique NamemRNA_M-pyrifera_M_contig122004.4530.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A454XZ35_OSTTA (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XZ35_OSTTA)

HSP 1 Score: 85.5 bits (210), Expect = 2.970e-20
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   31 SRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTE 171
            S LLP EL+E+CVGSP+WVLMKGE+E+TG LRGFD YVNMVLEDVTE
Sbjct:   13 SALLPSELVERCVGSPLWVLMKGEKEMTGTLRGFDVYVNMVLEDVTE 59
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BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A6A6UFI8_9PEZI (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6UFI8_9PEZI)

HSP 1 Score: 85.1 bits (209), Expect = 3.040e-20
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   28 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTEMYGIGG 189
            AS+LLPLELI+KCVGS IWV+MKGE+E TG L GFD YVNMVLEDVTE    GG
Sbjct:    2 ASQLLPLELIDKCVGSRIWVIMKGEKEFTGTLLGFDDYVNMVLEDVTEFDFTGG 55
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BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: N1J7Z5_BLUG1 (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Blumeria TaxID=34372 RepID=N1J7Z5_BLUG1)

HSP 1 Score: 84.7 bits (208), Expect = 4.560e-20
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   28 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTEMYGIG 186
            AS+LLPLELI+KCVGS IWV+MKG++E TG+L GFD YVNMVLEDVTE+  +G
Sbjct:    2 ASQLLPLELIDKCVGSKIWVVMKGDKEFTGVLLGFDDYVNMVLEDVTEIDYLG 54
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BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: W7LXC0_GIBM7 (U6 snRNA-associated Sm-like protein LSm5 n=10 Tax=Fusarium TaxID=5506 RepID=W7LXC0_GIBM7)

HSP 1 Score: 83.6 bits (205), Expect = 7.290e-20
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   28 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTEMY 177
            AS+LLPLELI+KCVGS IWV+MKG++E +G L GFD YVNMVLEDVTE+Y
Sbjct:    2 ASQLLPLELIDKCVGSRIWVIMKGDKEFSGTLVGFDDYVNMVLEDVTELY 51
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BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A420IT50_9PEZI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420IT50_9PEZI)

HSP 1 Score: 84.0 bits (206), Expect = 9.700e-20
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   28 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTEMYGIGG 189
            AS+LLPLELI+KCVGS IWV+MKG++E +G+L GFD YVNMVLEDVTE+   GG
Sbjct:    2 ASQLLPLELIDKCVGSKIWVVMKGDKEFSGVLLGFDDYVNMVLEDVTEIDYSGG 55
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BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: S3C9X0_OPHP1 (U6 snRNA-associated Sm-like protein LSm5 n=6 Tax=Sordariomycetes TaxID=147550 RepID=S3C9X0_OPHP1)

HSP 1 Score: 82.8 bits (203), Expect = 2.300e-19
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   28 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTEMYGIGG 189
            A++LLPLELI+KCVGS IWV+MKGERE +G L GFD YVNMVLEDVTE    GG
Sbjct:    2 AAQLLPLELIDKCVGSRIWVVMKGEREFSGTLVGFDDYVNMVLEDVTEFDYTGG 55
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BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A8K1CS49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS49_PYTOL)

HSP 1 Score: 82.8 bits (203), Expect = 2.630e-19
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   25 SASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTE 171
            SA RLLPLELI+KC+GS IW++MKG++E  G LRGFD YVNMVL+DVTE
Sbjct:    2 SAGRLLPLELIDKCIGSQIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTE 50
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BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.640e-19
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   28 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTE 171
            A RL+PLELI+KC+GS +W++MKG++EL G LRGFD YVNMVLEDVTE
Sbjct:    2 AGRLMPLELIDKCIGSKLWIIMKGDKELVGTLRGFDDYVNMVLEDVTE 49
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BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A1Y2EHZ5_9PEZI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Xylariales TaxID=37989 RepID=A0A1Y2EHZ5_9PEZI)

HSP 1 Score: 82.4 bits (202), Expect = 4.160e-19
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   22 PSASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTE 171
            P+AS LLPLELI+KCVGS IWV+MKG++E +G L GFD YVNMVLEDVTE
Sbjct:    6 PTASSLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 55
[Close]
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Match: A0A6G1IB61_9PEZI (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Trichodelitschia bisporula TaxID=703511 RepID=A0A6G1IB61_9PEZI)

HSP 1 Score: 82.0 bits (201), Expect = 5.030e-19
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   28 ASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNMVLEDVTE 171
            AS+LLPLELIEKCVGS IWV+MKG++E +G L GFD YVNMVLEDVTE
Sbjct:    2 ASQLLPLELIEKCVGSKIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122004.4530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A454XZ35_OSTTA2.970e-2080.85U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=O... [more]
A0A6A6UFI8_9PEZI3.040e-2075.93U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=M... [more]
N1J7Z5_BLUG14.560e-2073.58U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=B... [more]
W7LXC0_GIBM77.290e-2076.00U6 snRNA-associated Sm-like protein LSm5 n=10 Tax=... [more]
A0A420IT50_9PEZI9.700e-2072.22U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=G... [more]
S3C9X0_OPHP12.300e-1974.07U6 snRNA-associated Sm-like protein LSm5 n=6 Tax=S... [more]
A0A8K1CS49_PYTOL2.630e-1973.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835ZDD9_9STRA3.640e-1972.92U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A1Y2EHZ5_9PEZI4.160e-1976.00U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=X... [more]
A0A6G1IB61_9PEZI5.030e-1979.17U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122004contigM-pyrifera_M_contig122004:243..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.3
Seed ortholog evalue6.1e-15
Seed eggNOG ortholog70448.Q014W7
KEGG koko:K12624
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005688,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0030532,GO:0032991,GO:0033993,GO:0034641,GO:0034655,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:0097305,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990726,GO:1990904
EggNOG free text desc.snRNP Sm proteins
EggNOG OGs34I5F@3041,37VA1@33090,COG1958@1,KOG1775@2759
COG Functional cat.A
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons1
Model size204
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.0931137-CDS-M-pyrifera_M_contig122004:242..4461622815740.0931137-CDS-M-pyrifera_M_contig122004:242..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122004 243..446 +
1692277547.191272-CDS-M-pyrifera_M_contig122004:242..4461692277547.191272-CDS-M-pyrifera_M_contig122004:242..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122004 243..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122004.4530.1prot_M-pyrifera_M_contig122004.4530.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122004 243..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122004.4530.1

>prot_M-pyrifera_M_contig122004.4530.1 ID=prot_M-pyrifera_M_contig122004.4530.1|Name=mRNA_M-pyrifera_M_contig122004.4530.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MASSGPPPSASRLLPLELIEKCVGSPIWVLMKGERELTGILRGFDTYVNM
VLEDVTEMYGIGGVDGV*
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mRNA from alignment at M-pyrifera_M_contig122004:243..446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122004.4530.1 ID=mRNA_M-pyrifera_M_contig122004.4530.1|Name=mRNA_M-pyrifera_M_contig122004.4530.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig122004:243..446+ (Macrocystis pyrifera P11B4 male)
ATGGCATCAAGTGGACCTCCACCTTCTGCGTCACGATTACTACCCCTTGA
GTTGATTGAAAAGTGTGTTGGTTCTCCTATTTGGGTGTTGATGAAAGGTG
AAAGGGAGTTGACTGGAATTTTGCGTGGGTTCGACACCTATGTGAACATG
GTGCTTGAGGACGTGACTGAAATGTATGGGATTGGTGGAGTGGATGGGGT
GTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122004:243..446+

>mRNA_M-pyrifera_M_contig122004.4530.1 ID=mRNA_M-pyrifera_M_contig122004.4530.1|Name=mRNA_M-pyrifera_M_contig122004.4530.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig122004:243..446+ (Macrocystis pyrifera P11B4 male)
ATGGCATCAAGTGGACCTCCACCTTCTGCGTCACGATTACTACCCCTTGA
GTTGATTGAAAAGTGTGTTGGTTCTCCTATTTGGGTGTTGATGAAAGGTG
AAAGGGAGTTGACTGGAATTTTGCGTGGGTTCGACACCTATGTGAACATG
GTGCTTGAGGACGTGACTGAAATGTATGGGATTGGTGGAGTGGATGGGGT
GTAGATGGCATCAAGTGGACCTCCACCTTCTGCGTCACGATTACTACCCC
TTGAGTTGATTGAAAAGTGTGTTGGTTCTCCTATTTGGGTGTTGATGAAA
GGTGAAAGGGAGTTGACTGGAATTTTGCGTGGGTTCGACACCTATGTGAA
CATGGTGCTTGAGGACGTGACTGAAATGTATGGGATTGGTGGAGTGGATG
GGGTGTAG
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