mRNA_M-pyrifera_M_contig121988.4520.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121988.4520.1
Unique NamemRNA_M-pyrifera_M_contig121988.4520.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Match: UPI001E8CAA04 (uncharacterized protein n=1 Tax=Boeremia exigua TaxID=749465 RepID=UPI001E8CAA04)

HSP 1 Score: 62.4 bits (150), Expect = 1.180e-10
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   49 GGRTCSKCTGGGARLRCSRCKQAWYCSRECQKGHWRAHKPKCAP 180
            G + CS C+G  ARLRCSRCK A+YC + CQK  W+AH+  C P
Sbjct:   94 GSKACSTCSGQSARLRCSRCKNAYYCDKACQKSSWKAHRQTCEP 137
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BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Match: UPI001B37B162 (uncharacterized protein n=1 Tax=Cucurbitaria berberidis CBS 394.84 TaxID=1168544 RepID=UPI001B37B162)

HSP 1 Score: 60.1 bits (144), Expect = 8.570e-10
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   61 CSKCTGGGARLRCSRCKQAWYCSRECQKGHWRAHKPKCAP 180
            CS C+G  AR RCSRCK A+YC R CQK HW+ H+  C P
Sbjct:   95 CSTCSGQPARRRCSRCKSAYYCDRNCQKSHWKTHRNACEP 134
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BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Match: A0A6A6A0B1_9PLEO (MYND-type zinc finger protein samB n=1 Tax=Dothidotthia symphoricarpi CBS 119687 TaxID=1392245 RepID=A0A6A6A0B1_9PLEO)

HSP 1 Score: 59.7 bits (143), Expect = 1.390e-9
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   61 CSKCTGGGARLRCSRCKQAWYCSRECQKGHWRAHKPKCAP 180
            CS C+GG A+LRCSRCK A+YC + CQK  W+AH+  C P
Sbjct:  101 CSTCSGGPAKLRCSRCKAAFYCDKACQKSAWKAHRTVCEP 140
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BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Match: A0A1Y2LTE4_EPING (MYND-type zinc finger protein samB n=3 Tax=Didymellaceae TaxID=683158 RepID=A0A1Y2LTE4_EPING)

HSP 1 Score: 59.3 bits (142), Expect = 1.890e-9
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   49 GGRTCSKCTGGGARLRCSRCKQAWYCSRECQKGHWRAHKPKCAP 180
            G + C  C+G  ARLRCSRCK A+YC + CQK  W+AH+  C P
Sbjct:   96 GSKACDTCSGQTARLRCSRCKNAYYCDKACQKSSWKAHRQICEP 139
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BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Match: A0A4Q3NAT5_9BACT (Zinc finger MYND domain-containing protein n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=A0A4Q3NAT5_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 3.370e-9
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   61 CSKCTGGGARLRCSRCKQAWYCSRECQKGHWRAHKPKCAP 180
            CS C+GG A+ RCSRCK A+YC + CQK  W+ H+  C P
Sbjct:   14 CSTCSGGPAKRRCSRCKAAYYCDKNCQKSDWKTHRNVCEP 53
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BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Match: A0A6A5QCB1_AMPQU (MYND-type zinc finger protein samB n=1 Tax=Ampelomyces quisqualis TaxID=50730 RepID=A0A6A5QCB1_AMPQU)

HSP 1 Score: 58.2 bits (139), Expect = 4.910e-9
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   61 CSKCTGGGARLRCSRCKQAWYCSRECQKGHWRAHKPKCAP 180
            CS C+GG A+ RCSRCK A+YC R CQK  W+ H+  C P
Sbjct:   97 CSTCSGGPAKRRCSRCKAAYYCDRNCQKSDWKTHRNACEP 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Match: A0A8K0QXH4_9PLEO (Uncharacterized protein n=1 Tax=Paraphoma chrysanthemicola TaxID=798071 RepID=A0A8K0QXH4_9PLEO)

HSP 1 Score: 57.8 bits (138), Expect = 6.910e-9
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   61 CSKCTGGGARLRCSRCKQAWYCSRECQKGHWRAHKPKCAP 180
            CS C+GG A+ RCSRCK A+YC R CQK  W+ H+  C P
Sbjct:   97 CSTCSGGPAKRRCSRCKAAYYCDRNCQKSDWKTHRNVCEP 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Match: A0A1J7IP49_9PEZI (MYND-type zinc finger protein samB n=1 Tax=Coniochaeta ligniaria NRRL 30616 TaxID=1408157 RepID=A0A1J7IP49_9PEZI)

HSP 1 Score: 57.4 bits (137), Expect = 1.370e-8
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   58 TCSKCTGGGARL-----RCSRCKQAWYCSRECQKGHWRAHKPKCA 177
            +C  C   GA +     +CSRCK+AWYC+R+CQ+ HW+AHKP CA
Sbjct:  127 SCFNCGKIGADIHKHLEKCSRCKEAWYCNRDCQRAHWKAHKPYCA 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Match: A0A178EAV7_9PLEO (MYND-type zinc finger protein samB n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178EAV7_9PLEO)

HSP 1 Score: 56.2 bits (134), Expect = 1.390e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:   61 CSKCTGGGARLRCSRCKQAWYCSRECQKGHWRAHKPKCAP 180
            CS C+G  AR RCSRCK A+YC R CQK  W+ H+  C P
Sbjct:   61 CSTCSGQPARRRCSRCKSAYYCDRNCQKSDWKTHRNVCEP 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Match: W7EK84_COCVI (MYND-type zinc finger protein samB n=7 Tax=Bipolaris TaxID=33194 RepID=W7EK84_COCVI)

HSP 1 Score: 56.2 bits (134), Expect = 1.450e-8
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:    4 LFRSYAQRCTRMADAGGRT---CSKCTGGGARLRCSRCKQAWYCSRECQKGHWRAHKPKCAP 180
            LFRS     +  +  G  T   CS C+G  AR RCSRCK A+YC R CQK  W+ H+  C P
Sbjct:   41 LFRSLRPMASTESLNGALTSKPCSTCSGQHARRRCSRCKAAYYCDRNCQKSDWKTHRNICEP 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121988.4520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E8CAA041.180e-1056.82uncharacterized protein n=1 Tax=Boeremia exigua Ta... [more]
UPI001B37B1628.570e-1060.00uncharacterized protein n=1 Tax=Cucurbitaria berbe... [more]
A0A6A6A0B1_9PLEO1.390e-960.00MYND-type zinc finger protein samB n=1 Tax=Dothido... [more]
A0A1Y2LTE4_EPING1.890e-954.55MYND-type zinc finger protein samB n=3 Tax=Didymel... [more]
A0A4Q3NAT5_9BACT3.370e-955.00Zinc finger MYND domain-containing protein n=1 Tax... [more]
A0A6A5QCB1_AMPQU4.910e-957.50MYND-type zinc finger protein samB n=1 Tax=Ampelom... [more]
A0A8K0QXH4_9PLEO6.910e-957.50Uncharacterized protein n=1 Tax=Paraphoma chrysant... [more]
A0A1J7IP49_9PEZI1.370e-853.33MYND-type zinc finger protein samB n=1 Tax=Conioch... [more]
A0A178EAV7_9PLEO1.390e-857.50MYND-type zinc finger protein samB n=1 Tax=Pyrenoc... [more]
W7EK84_COCVI1.450e-846.77MYND-type zinc finger protein samB n=7 Tax=Bipolar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121988contigM-pyrifera_M_contig121988:59..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.0551934-CDS-M-pyrifera_M_contig121988:58..1071622815739.0551934-CDS-M-pyrifera_M_contig121988:58..107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121988 59..107 -
1692277546.4926834-CDS-M-pyrifera_M_contig121988:58..1071692277546.4926834-CDS-M-pyrifera_M_contig121988:58..107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121988 59..107 -
1622815739.067104-CDS-M-pyrifera_M_contig121988:166..2971622815739.067104-CDS-M-pyrifera_M_contig121988:166..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121988 167..297 -
1692277546.5070171-CDS-M-pyrifera_M_contig121988:166..2971692277546.5070171-CDS-M-pyrifera_M_contig121988:166..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121988 167..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121988.4520.1prot_M-pyrifera_M_contig121988.4520.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121988 59..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121988.4520.1

>prot_M-pyrifera_M_contig121988.4520.1 ID=prot_M-pyrifera_M_contig121988.4520.1|Name=mRNA_M-pyrifera_M_contig121988.4520.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
QLFRSYAQRCTRMADAGGRTCSKCTGGGARLRCSRCKQAWYCSRECQKGH
WRAHKPKCAP
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mRNA from alignment at M-pyrifera_M_contig121988:59..297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121988.4520.1 ID=mRNA_M-pyrifera_M_contig121988.4520.1|Name=mRNA_M-pyrifera_M_contig121988.4520.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=239bp|location=Sequence derived from alignment at M-pyrifera_M_contig121988:59..297- (Macrocystis pyrifera P11B4 male)
CAGTTGTTCAGGAGCTACGCGCAGCGCTGTACTCGAATGGCCGATGCAGG
CGGTCGGACGTGTTCCAAGTGTACGGGGGGCGGCGCAAGGCTGCGTTGCA
GTCGGTGTAAACAAGCGTGGTATTGCAGCAGGTGAGGCGGAGCGGCTCTT
CAGTGCTCTCCCGGCGTTTGTGATCATGCTGCGCGCGCAGAGAGTGCCAG
AAGGGACACTGGCGGGCACACAAGCCGAAATGCGCTCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121988:59..297-

>mRNA_M-pyrifera_M_contig121988.4520.1 ID=mRNA_M-pyrifera_M_contig121988.4520.1|Name=mRNA_M-pyrifera_M_contig121988.4520.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig121988:59..297- (Macrocystis pyrifera P11B4 male)
CAGTTGTTCAGGAGCTACGCGCAGCGCTGTACTCGAATGGCCGATGCAGG
CGGTCGGACGTGTTCCAAGTGTACGGGGGGCGGCGCAAGGCTGCGTTGCA
GTCGGTGTAAACAAGCGTGGTATTGCAGCAGCAGTTGTTCAGGAGCTACG
CGCAGCGCTGTACTCGAATGGCCGATGCAGGCGGTCGGACGTGTTCCAAG
TGTACGGGGGGCGGCGCAAGGCTGCGTTGCAGTCGGTGTAAACAAGCGTG
GTATTGCAGCAGAGAGTGCCAGAAGGGACACTGGCGGGCACACAAGCCGA
AATGCGCTCCCAGAGTGCCAGAAGGGACACTGGCGGGCACACAAGCCGAA
ATGCGCTCCC
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