mRNA_M-pyrifera_M_contig121984.4519.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121984.4519.1
Unique NamemRNA_M-pyrifera_M_contig121984.4519.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Match: A0A397J5E8_9GLOM (Uncharacterized protein n=2 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J5E8_9GLOM)

HSP 1 Score: 71.2 bits (173), Expect = 4.910e-12
Identity = 48/125 (38.40%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 LLNNVAFHFRISLPLHSLFRSGPLVASVALGAALG-KRYGRAELCAVAAVSLGVVCATFASLEPSPAASAXXXXXEGEAAGLAAQTVGICLMAAALLLSTGLSLYQETVFRRHPAASQQEFLLYT 372
            +LNN+A  +RIS+PLH +FRSG L+ S+ LG A+G KRY   ++ +V  V+LGV+CAT +S   +          +  A       +GI L++ AL+LS  + LYQE  + ++  ++ +E L YT
Sbjct:   97 ILNNIALGYRISVPLHIIFRSGGLIVSMILGWAVGGKRYTMKQVFSVIMVTLGVICATRSSASKA----------QSVATSTTDYMIGISLLSIALILSCVMGLYQEFTYAKY-GSNWREGLFYT 210
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BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Match: A0A1Y1WC04_9FUNG (UAA transporter (Fragment) n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WC04_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 4.030e-11
Identity = 48/123 (39.02%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:    4 LNNVAFHFRISLPLHSLFRSGPLVASVALG-AALGKRYGRAELCAVAAVSLGVVCATFASLEPSPAASAXXXXXEGEAAGLAAQTVGICLMAAALLLSTGLSLYQETVFRRHPAASQQEFLLY 369
            LNN+A  +RIS+PLH +FRS  L+A++A G   +GKRY   ++ AV  VS+GVV AT AS+             + +A G     +GI L+   + L+  L LYQET ++++     QE L Y
Sbjct:   85 LNNIALGYRISIPLHIVFRSSGLMANMACGYVVMGKRYPVKQVVAVLMVSVGVVVATLASVT------------QHDAEGADESLIGIALLTMGVFLAAMLGLYQETTYKKY-GKHWQEGLFY 194
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BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Match: A0A164M4J4_9AGAM (UAA transporter n=1 Tax=Sistotremastrum niveocremeum HHB9708 TaxID=1314777 RepID=A0A164M4J4_9AGAM)

HSP 1 Score: 68.6 bits (166), Expect = 4.740e-11
Identity = 39/123 (31.71%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:    1 LLNNVAFHFRISLPLHSLFRSGPLVASVALGAALGKRYGRAELCAVAAVSLGVVCATFASLEPSPAASAXXXXXEGEAAGLAAQTVGICLMAAALLLSTGLSLYQETVFRRHPAASQQEFLLY 369
            LLNN+AF +R+ +P+H +FRSG +V ++ +G  +GKRY + ++ ++  V+LGV+  TF++    P  S+     E          +G+ ++  AL+LS  + L Q+ ++  +     QE L Y
Sbjct:  114 LLNNIAFAYRVPMPVHIIFRSGGMVVNMVMGWFIGKRYTKLQITSIIFVTLGVILTTFSASFDDPHISS-----ESVQTAYTEYLIGVGILTLALILSGAMGLAQDAMYSEYGRGHWQEALFY 231
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BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Match: A0A397UHY8_9GLOM (UAA transporter n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UHY8_9GLOM)

HSP 1 Score: 68.2 bits (165), Expect = 6.030e-11
Identity = 48/124 (38.71%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:    4 LNNVAFHFRISLPLHSLFRSGPLVASVALGAALGKR-YGRAELCAVAAVSLGVVCATFASLEPSPAASAXXXXXEGEAAGLAAQTVGICLMAAALLLSTGLSLYQETVFRRHPAASQQEFLLYT 372
            LNN+AF ++IS+PLH +FRSG L+ S+ LG  + KR Y  A++ AV  V+LGV+   FA+L  S A +      E    G     +GI L++  L++S  + L+QE  + +H +   +E L YT
Sbjct:  100 LNNIAFGYKISVPLHIIFRSGGLIVSMILGWTIRKRRYSIAQVTAVVMVTLGVI---FATLSSSDAGT-----KEDVEVGTPEYVIGISLLSITLVISCFMGLFQELTYEKHKS-DWREGLFYT 214
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BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Match: A0A166DW20_9AGAM (UAA-domain-containing protein n=1 Tax=Sistotremastrum suecicum HHB10207 ss-3 TaxID=1314776 RepID=A0A166DW20_9AGAM)

HSP 1 Score: 68.2 bits (165), Expect = 7.310e-11
Identity = 39/123 (31.71%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:    1 LLNNVAFHFRISLPLHSLFRSGPLVASVALGAALGKRYGRAELCAVAAVSLGVVCATFASLEPSPAASAXXXXXEGEAAGLAAQTVGICLMAAALLLSTGLSLYQETVFRRHPAASQQEFLLY 369
            LLNN+AF +R+ +P+H +FRSG +V ++ +G  +GKRY + ++ ++  V+LGV+  TF++    P  S+     E          +G+ ++  AL+LS  + L Q+ ++  +     QE L Y
Sbjct:  325 LLNNIAFAYRVPMPVHIIFRSGGMVVNMVMGWFIGKRYTKLQITSIIFVTLGVILTTFSASFDDPHISS-----ESVQTAYTEYFIGVGILTLALILSGAMGLAQDAMYSEYGRGHWQEALFY 442
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BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Match: UPI000D6A05F3 (UDP-xylose and UDP-N-acetylglucosamine transporter isoform X1 n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A05F3)

HSP 1 Score: 64.7 bits (156), Expect = 2.630e-10
Identity = 42/118 (35.59%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:    4 LNNVAFHFRISLPLHSLFRSGPLVASVALGAA-LGKRYGRAELCAVAAVSLGVVCATFASLEPSPAASAXXXXXEGEAAGLAAQTVGICLMAAALLLSTGLSLYQETVFRRHPAASQQ 354
            +NN A +  I++PLH +FRSG L+AS+ALG + L KRY  ++  ++A VSLG+   TF S +   + S+     E  +A      +GI  +  ALL+S  + ++QET++++    S++
Sbjct:   11 VNNYALNLNIAMPLHMIFRSGSLIASMALGISILNKRYTVSKYISIALVSLGIFTCTFMSAKEVSSVSSTSEDEESVSA-FFWWLLGIAALTFALLMSARMGIFQETLYKKFGKHSKE 127
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BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Match: A0A1X2HU69_SYNRA (UAA transporter n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HU69_SYNRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.640e-10
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 1 
Query:    4 LNNVAFHFRISLPLHSLFRSGPLVASVALGAA-LGKRYGRAELCAVAAVSLGVVCATFASLEPSPAASAXXXXXEGEAAGLAAQTVGICLMAAALLLSTGLSLYQETVFRRHPAASQQEFLLYT 372
            LNN+A  +RIS+PLH +FRSG L A++ LGA  L KRY   ++  V  V+LGVV AT  +  PS A ++     +G+        +GI L+  A++LS  + L QE  ++++     +E L YT
Sbjct:   63 LNNLALAYRISMPLHIIFRSGGLFANMVLGAIILKKRYPMGQIMGVGLVTLGVVWATLDNAAPSSAENSD----DGDF------LIGITLLVVAMVLSACMGLLQEVTYKKY-GKQWREGLFYT 175
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BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Match: UPI001C475FFD (UDP-xylose and UDP-N-acetylglucosamine transporter-like n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C475FFD)

HSP 1 Score: 65.5 bits (158), Expect = 4.710e-10
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:    7 NNVAFHFRISLPLHSLFRSGPLVASVALGA-ALGKRYGRAELCAVAAVSLGVVCATFASLEPSPAASAXXXXXEGEAAGLAAQTV----GICLMAAALLLSTGLSLYQETVFRRH 336
            NN AF FRIS+PLH +FRSG L+A++ +    LG+ Y   +  +VA ++LG +  TFAS E     +      E E AG  +Q V    GI L+  AL +S  + ++QE ++ +H
Sbjct:   80 NNQAFGFRISMPLHMIFRSGGLIANMIMAVLVLGRNYSPTKYVSVAMITLGTIVCTFASAE-----TLDSEDLEWEVAGGVSQFVTWLMGIGLLTFALFMSARMGIFQECLYSKH 189
[Close]
BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Match: UPI00044197DF (UDP-xylose and UDP-N-acetylglucosamine transporter isoform X2 n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI00044197DF)

HSP 1 Score: 64.7 bits (156), Expect = 6.380e-10
Identity = 42/118 (35.59%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:    4 LNNVAFHFRISLPLHSLFRSGPLVASVALGAA-LGKRYGRAELCAVAAVSLGVVCATFASLEPSPAASAXXXXXEGEAAGLAAQTVGICLMAAALLLSTGLSLYQETVFRRHPAASQQ 354
            +NN A +  I++PLH +FRSG L+AS+ALG + L KRY  ++  ++A VSLG+   TF S +   + S+     E  +A      +GI  +  ALL+S  + ++QET++++    S++
Sbjct:   11 VNNYALNLNIAMPLHMIFRSGSLIASMALGISILNKRYTVSKYISIALVSLGIFTCTFMSAKEVSSVSSTSEDEESVSA-FFWWLLGIAALTFALLMSARMGIFQETLYKKFGKHSKE 127
[Close]
BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Match: A0A2P2I068_9CRUS (UDP-xylose and UDP-N-acetylglucosamine transporter-like n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I068_9CRUS)

HSP 1 Score: 65.1 bits (157), Expect = 6.950e-10
Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:    7 NNVAFHFRISLPLHSLFRSGPLVASVALG-AALGKRYGRAELCAVAAVSLGVVCATFASLEPSPAASAXXXXXEGEAAGLAAQTVGICLMAAALLLSTGLSLYQETVFRRH 336
            NNVAF F+IS+PLH +FRSG L+A++ +    LG+RY  ++  +V  ++ G V  TFAS +      A     E  +       +GI L+  AL +S  + +YQE ++++H
Sbjct:   80 NNVAFGFKISMPLHMIFRSGGLIANLVMAMVVLGRRYTVSKYLSVVLITFGTVMCTFASADQVKDDEASD---EENSQNFITWIMGIALLTFALFMSARMGIYQECLYKKH 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121984.4519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397J5E8_9GLOM4.910e-1238.40Uncharacterized protein n=2 Tax=Diversispora epiga... [more]
A0A1Y1WC04_9FUNG4.030e-1139.02UAA transporter (Fragment) n=1 Tax=Linderina penni... [more]
A0A164M4J4_9AGAM4.740e-1131.71UAA transporter n=1 Tax=Sistotremastrum niveocreme... [more]
A0A397UHY8_9GLOM6.030e-1138.71UAA transporter n=2 Tax=Gigaspora TaxID=4873 RepID... [more]
A0A166DW20_9AGAM7.310e-1131.71UAA-domain-containing protein n=1 Tax=Sistotremast... [more]
UPI000D6A05F32.630e-1035.59UDP-xylose and UDP-N-acetylglucosamine transporter... [more]
A0A1X2HU69_SYNRA3.640e-1038.71UAA transporter n=1 Tax=Syncephalastrum racemosum ... [more]
UPI001C475FFD4.710e-1038.26UDP-xylose and UDP-N-acetylglucosamine transporter... [more]
UPI00044197DF6.380e-1035.59UDP-xylose and UDP-N-acetylglucosamine transporter... [more]
A0A2P2I068_9CRUS6.950e-1036.04UDP-xylose and UDP-N-acetylglucosamine transporter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121984contigM-pyrifera_M_contig121984:1..372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score81.6
Seed ortholog evalue2.8e-13
Seed eggNOG ortholog588596.U9U3Z1
Preferred nameYEA4
KEGG koko:K15278
KEGG TC2.A.7.10
Hectar predicted targeting categorymitochondrion
GOsGO:0000139,GO:0000271,GO:0003674,GO:0005215,GO:0005338,GO:0005457,GO:0005462,GO:0005464,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006030,GO:0006031,GO:0006037,GO:0006038,GO:0006040,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009059,GO:0009272,GO:0009987,GO:0010383,GO:0012505,GO:0015075,GO:0015165,GO:0015711,GO:0015780,GO:0015783,GO:0015786,GO:0015790,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016051,GO:0017144,GO:0022857,GO:0030173,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0033692,GO:0034220,GO:0034221,GO:0034637,GO:0034645,GO:0036080,GO:0042175,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046349,GO:0051179,GO:0051234,GO:0051278,GO:0055085,GO:0070589,GO:0070592,GO:0071554,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071966,GO:0090480,GO:0090481,GO:0098588,GO:0098656,GO:0098791,GO:0098827,GO:1901071,GO:1901073,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1990569
EggNOG free text desc.transporter
EggNOG OGs38FUF@33154,3NUDG@4751,KOG1583@1,KOG1583@2759
COG Functional cat.P
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815739.0207436-CDS-M-pyrifera_M_contig121984:0..3721622815739.0207436-CDS-M-pyrifera_M_contig121984:0..372Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121984 1..372 +
1692277546.4714367-CDS-M-pyrifera_M_contig121984:0..3721692277546.4714367-CDS-M-pyrifera_M_contig121984:0..372Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121984 1..372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121984.4519.1prot_M-pyrifera_M_contig121984.4519.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121984 1..372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121984.4519.1

>prot_M-pyrifera_M_contig121984.4519.1 ID=prot_M-pyrifera_M_contig121984.4519.1|Name=mRNA_M-pyrifera_M_contig121984.4519.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
LLNNVAFHFRISLPLHSLFRSGPLVASVALGAALGKRYGRAELCAVAAVS
LGVVCATFASLEPSPAASAAAAAAEGEAAGLAAQTVGICLMAAALLLSTG
LSLYQETVFRRHPAASQQEFLLYT
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mRNA from alignment at M-pyrifera_M_contig121984:1..372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121984.4519.1 ID=mRNA_M-pyrifera_M_contig121984.4519.1|Name=mRNA_M-pyrifera_M_contig121984.4519.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig121984:1..372+ (Macrocystis pyrifera P11B4 male)
CTGCTCAACAACGTCGCCTTCCACTTCCGCATTTCGCTGCCGCTGCACTC
GCTCTTCCGCTCGGGCCCGCTCGTCGCCAGCGTCGCCCTGGGCGCGGCGC
TGGGCAAGCGCTACGGCCGCGCGGAGCTGTGCGCCGTCGCCGCCGTCTCC
CTGGGCGTCGTCTGCGCGACCTTTGCGTCGCTCGAGCCCTCGCCCGCCGC
CTCCGCCGCCGCCGCCGCTGCAGAGGGCGAGGCCGCCGGCCTCGCGGCCC
AGACGGTGGGCATCTGCCTCATGGCCGCCGCCCTCCTGCTCAGCACCGGC
CTGAGCCTCTACCAGGAGACCGTCTTCCGCCGCCACCCCGCCGCCAGCCA
GCAGGAGTTCCTCCTCTACACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121984:1..372+

>mRNA_M-pyrifera_M_contig121984.4519.1 ID=mRNA_M-pyrifera_M_contig121984.4519.1|Name=mRNA_M-pyrifera_M_contig121984.4519.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig121984:1..372+ (Macrocystis pyrifera P11B4 male)
CTGCTCAACAACGTCGCCTTCCACTTCCGCATTTCGCTGCCGCTGCACTC
GCTCTTCCGCTCGGGCCCGCTCGTCGCCAGCGTCGCCCTGGGCGCGGCGC
TGGGCAAGCGCTACGGCCGCGCGGAGCTGTGCGCCGTCGCCGCCGTCTCC
CTGGGCGTCGTCTGCGCGACCTTTGCGTCGCTCGAGCCCTCGCCCGCCGC
CTCCGCCGCCGCCGCCGCTGCAGAGGGCGAGGCCGCCGGCCTCGCGGCCC
AGACGGTGGGCATCTGCCTCATGGCCGCCGCCCTCCTGCTCAGCACCGGC
CTGAGCCTCTACCAGGAGACCGTCTTCCGCCGCCACCCCGCCGCCAGCCA
GCAGGAGTTCCTCCTCTACACCCTGCTCAACAACGTCGCCTTCCACTTCC
GCATTTCGCTGCCGCTGCACTCGCTCTTCCGCTCGGGCCCGCTCGTCGCC
AGCGTCGCCCTGGGCGCGGCGCTGGGCAAGCGCTACGGCCGCGCGGAGCT
GTGCGCCGTCGCCGCCGTCTCCCTGGGCGTCGTCTGCGCGACCTTTGCGT
CGCTCGAGCCCTCGCCCGCCGCCTCCGCCGCCGCCGCCGCTGCAGAGGGC
GAGGCCGCCGGCCTCGCGGCCCAGACGGTGGGCATCTGCCTCATGGCCGC
CGCCCTCCTGCTCAGCACCGGCCTGAGCCTCTACCAGGAGACCGTCTTCC
GCCGCCACCCCGCCGCCAGCCAGCAGGAGTTCCTCCTCTACACC
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