mRNA_M-pyrifera_M_contig121983.4518.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121983.4518.1
Unique NamemRNA_M-pyrifera_M_contig121983.4518.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Match: A0A397IYM4_9GLOM (DUF4209 domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IYM4_9GLOM)

HSP 1 Score: 62.8 bits (151), Expect = 9.380e-9
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 1
Query:    1 RVLSDLMLTLQGGKESAAVEQPPQILRDLLQHPVLVERLPHGLTALLHFLVGPPIGMNLRNVLWHGFLHHNVPEPYPLRSFLALLLLLFRSVLLLTLREAERGETLVLSPFVNHGGAYAAPLQLESLRILGSLADDD 411
            R+L  ++ T+   KE+  +   P ++RDLL  P LV+ L   +   L  L+GPP  MNLRNVLWHGF+      P P + + AL+++   S+     +E    ++L      N  G Y  P + ++ R      DDD
Sbjct:  162 RILGCIIFTIH--KETFLI---PNLIRDLLISPPLVQALGKDIIFYLRCLIGPPSSMNLRNVLWHGFICSKEFLPIPAKWYSALIIITIMSICHKVRKEGGI-DSLTRRKGANLEGFYNLPFKSDNFR------DDD 286          
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Match: A0A433Q7K8_9FUNG (DUF4209 domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q7K8_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 1.770e-8
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 1
Query:    1 RVLSDLMLTLQGGKESAAVEQPPQILRDLLQHPVLVERLPHG--LTALLHFLVGPPIGMNLRNVLWHGFLHHNVPEPYPLRSFLALLLLLFRSVLLLTLREAERGETLVLSPFV-NHGGAYAAPLQLESLRILGSLADDD 411
            R L D++ T  G K++A V   P ++++L+  P L   +  G  +  LL  L+GPP+ +NLRN+LWHGF+  N   P P R   AL+++++ SV+  T+   E  E L   P    + G Y +    E    +GSL  ++
Sbjct:  192 RTLGDIVYTYHG-KDAAKV---PFLIKELVALPCLKAVMVGGAKMAILLTHLIGPPVTLNLRNILWHGFVSPNEFLPSPARELDALMVVVWASVVRRTMAGVEGWEWLERRPGRWGYEGWYWSGRDSEENGKVGSLGFEE 327          
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Match: H3GRF5_PHYRM (DUF4209 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRF5_PHYRM)

HSP 1 Score: 61.6 bits (148), Expect = 2.430e-8
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 1
Query:    1 RVLSDLMLTLQGGKESAAVEQPPQILRDLLQHPVLVERLPHGLTALLHFLVGPPIGMNLRNVLWHGFLHHNVPEPYPLRSFLALLLLLFRSVLLLTLREAERGETLVLSPFVNHGGAYAAPLQLESLRILGSLADDDGP 417
            + L DL       ++SA   +   ILRDLL    LV  LP GL  LL  L  P  G+NLRN++WHGF+    P  +P + F  L LLL  ++     R +++ +   +   + H G++          ILG   D+ GP
Sbjct:  276 KTLYDLHDERSSCRDSAKTRRKNMILRDLLHSETLVATLPDGLLRLLKILFLPS-GLNLRNLVWHGFM---APAEFP-KCFGCLTLLLIVTLPTYFDRPSKKLDDKTVDAELFHIGSFDTKFAARPAEILGVEGDEGGP 409          
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Match: L1JBX9_GUITC (DUF4209 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBX9_GUITC)

HSP 1 Score: 61.6 bits (148), Expect = 2.460e-8
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 RVLSDLM---LTLQGGK-ESAAVEQPPQILRDLLQHPVLVERLPHGLTALLHFLVGPPIGMNLRNVLWHGFLHHNVPEPYPLRSFLALLLL 261
            R+L D+    L+++G + E A  E PP +LRDLLQHPV+   LP G    +  L  P   +NLRN+LWHGFL    P  +P      LLLL
Sbjct:   93 RILFDIFYHALSVRGSELEGAVKENPPALLRDLLQHPVMKAALPTGAADWMSMLFHPKC-LNLRNLLWHGFL---CPADFPAEYSCLLLLL 179          
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Match: A9UZU9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UZU9_MONBE)

HSP 1 Score: 60.5 bits (145), Expect = 5.900e-8
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   73 ILRDLLQHPVLVERLPHGLTALLHFLVGPPIGMNLRNVLWHGFLHHNVPEPYPLRSFLALL 255
            +LRD+L HP+L          L   LVGPP G+NLRN+LWHGF+ H+ P P+     L LL
Sbjct:  181 LLRDILLHPLLATWATRAERRLAWLLVGPPTGLNLRNLLWHGFITHSTPLPWTFWLILPLL 241          
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Match: A0A2Z6QDP1_9GLOM (DUF4209 domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QDP1_9GLOM)

HSP 1 Score: 60.1 bits (144), Expect = 8.070e-8
Identity = 31/92 (33.70%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    1 RVLSDLMLTLQGGKESAAVEQPPQILRDLLQHPVLVERLPHGLTALLHFLVGPPIGMNLRNVLWHGFLHHNVPEPYPLRSFLALLLLLFRSV 276
            R+L D++ +L    ++  +   P ++RDLL  P L+  L   +   L  ++GPP  MNLRNVLWHGF++ +     P++ +  L+L++  S+
Sbjct:  133 RLLGDIIYSLHDDTDTPVI---PSLIRDLLIAPSLISLLGEEMIFFLRCIIGPPNSMNLRNVLWHGFINPHEFLKVPVKWYCTLILIITMSI 221          
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Match: A0A4P9XIC1_9FUNG (DUF4209 domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XIC1_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 4.970e-7
Identity = 32/68 (47.06%), Postives = 39/68 (57.35%), Query Frame = 1
Query:    1 RVLSDLMLTLQGGKESAAVEQPPQILRDLLQHPVLVERLPHGLTALLHFLVGPPIGMNLRNVLWHGFL 204
            R+L D++ T  G   S      P +LRDLL  P L+  +      LL  L+GPP GMNLRNV WHGFL
Sbjct:  109 RLLGDIVFTSTGQAGSV-----PFLLRDLLIAPPLIAAIGADRVFLLRLLIGPPTGMNLRNVAWHGFL 171          
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Match: A0A8H3XFY3_GIGMA (Endoplasmic reticulum membrane-associated RNA degradation protein-like n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3XFY3_GIGMA)

HSP 1 Score: 57.8 bits (138), Expect = 5.110e-7
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 1
Query:    1 RVLSDLMLTLQGGKESAAVEQPPQILRDLLQHPVLVERLPHGLTALLHFLVGPPIGMNLRNVLWHGFLHHNVPEPYPLRSFLALLLLLFRSVLLLTLREAERGETLVLSPFVNHGGAYAAPLQLESLRIL 390
            R+L D++ ++   K        P ++RDLL    LV  L   +   L  L+GPP  MNLRN+LWHGF++ N   P P + + AL++     V+ LT+ +  R   L+ S     G ++     L    I+
Sbjct:  165 RLLGDIIFSIHNDKFII-----PSLIRDLLIASPLVPLLGEDIIFFLRCLIGPPNSMNLRNILWHGFINPNEFLPIPAKWYSALVI-----VITLTICQRVRLCGLIDSLKKRDGASFEGFFHLSKPNII 284          
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Match: A0A397TDY5_9GLOM (DUF4209 domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TDY5_9GLOM)

HSP 1 Score: 56.6 bits (135), Expect = 1.310e-6
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1
Query:    1 RVLSDLMLTLQGGKESAAVEQPPQILRDLLQHPVLVERLPHGLTALLHFLVGPPIGMNLRNVLWHGFLHHNVPEPYPLRSFLALLLLLFRSV 276
            R L D++ +L        +   P ++RDLL  P LV  L   +   L  ++GPP  MNLRN+LWHGF+  +     P + + AL+L++  S+
Sbjct:  166 RFLGDIIYSLHNN-----ISIIPSLIRDLLIAPSLVSLLGEEMIFFLRCIIGPPSSMNLRNILWHGFISPHEFLKVPAKWYCALILVITMSI 252          
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Match: A0A152A5I3_9MYCE (DUF4209 domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A5I3_9MYCE)

HSP 1 Score: 56.2 bits (134), Expect = 1.770e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   70 QILRDLLQHPVLVERLPHGLTALLHFLVGPPIGMNLRNVLWHGFLHHNVPE 222
            ++LRDLL  P+L + +    T +L  L+GPPI +NLRNV+WHGF+  N  E
Sbjct:  164 RMLRDLLDDPILSDVIGKETTLILKLLIGPPISLNLRNVVWHGFISPNNDE 214          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121983.4518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397IYM4_9GLOM9.380e-932.85DUF4209 domain-containing protein n=1 Tax=Diversis... [more]
A0A433Q7K8_9FUNG1.770e-833.57DUF4209 domain-containing protein n=1 Tax=Jimgerde... [more]
H3GRF5_PHYRM2.430e-833.09DUF4209 domain-containing protein n=1 Tax=Phytopht... [more]
L1JBX9_GUITC2.460e-843.96DUF4209 domain-containing protein n=1 Tax=Guillard... [more]
A9UZU9_MONBE5.900e-847.54Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A2Z6QDP1_9GLOM8.070e-833.70DUF4209 domain-containing protein n=2 Tax=Rhizopha... [more]
A0A4P9XIC1_9FUNG4.970e-747.06DUF4209 domain-containing protein n=1 Tax=Thamnoce... [more]
A0A8H3XFY3_GIGMA5.110e-731.54Endoplasmic reticulum membrane-associated RNA degr... [more]
A0A397TDY5_9GLOM1.310e-634.78DUF4209 domain-containing protein n=1 Tax=Glomus c... [more]
A0A152A5I3_9MYCE1.770e-649.02DUF4209 domain-containing protein n=1 Tax=Tieghemo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121983contigM-pyrifera_M_contig121983:3..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog164328.Phyra79444
Preferred nameERMARD
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4209)
EggNOG OGs28JNU@1,2QS21@2759,3QCEQ@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size399
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.967934-UTR-M-pyrifera_M_contig121983:2..201622815738.967934-UTR-M-pyrifera_M_contig121983:2..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121983 3..20 +
1692277546.4365318-UTR-M-pyrifera_M_contig121983:2..201692277546.4365318-UTR-M-pyrifera_M_contig121983:2..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121983 3..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.981373-CDS-M-pyrifera_M_contig121983:20..4191622815738.981373-CDS-M-pyrifera_M_contig121983:20..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121983 21..419 +
1692277546.4589438-CDS-M-pyrifera_M_contig121983:20..4191692277546.4589438-CDS-M-pyrifera_M_contig121983:20..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121983 21..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121983.4518.1prot_M-pyrifera_M_contig121983.4518.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121983 21..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121983.4518.1

>prot_M-pyrifera_M_contig121983.4518.1 ID=prot_M-pyrifera_M_contig121983.4518.1|Name=mRNA_M-pyrifera_M_contig121983.4518.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MLTLQGGKESAAVEQPPQILRDLLQHPVLVERLPHGLTALLHFLVGPPIG
MNLRNVLWHGFLHHNVPEPYPLRSFLALLLLLFRSVLLLTLREAERGETL
VLSPFVNHGGAYAAPLQLESLRILGSLADDDGP
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mRNA from alignment at M-pyrifera_M_contig121983:3..419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121983.4518.1 ID=mRNA_M-pyrifera_M_contig121983.4518.1|Name=mRNA_M-pyrifera_M_contig121983.4518.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig121983:3..419+ (Macrocystis pyrifera P11B4 male)
AGAGTACTCTCCGACCTCATGCTCACACTCCAGGGAGGGAAGGAGAGTGC TGCTGTGGAGCAGCCACCGCAGATTCTCCGCGACCTCCTGCAGCACCCAG TGCTTGTCGAGAGGCTACCTCACGGCCTTACTGCTCTTCTACACTTTTTG GTGGGACCCCCTATTGGCATGAACTTGAGGAATGTGCTCTGGCATGGGTT TCTGCACCACAACGTTCCAGAGCCATACCCTCTCCGCTCGTTCCTAGCTC TCCTGCTGCTGCTGTTCCGTTCTGTATTGTTGCTTACATTACGTGAAGCT GAGCGAGGGGAAACACTTGTATTGAGCCCCTTTGTGAACCATGGAGGAGC CTACGCTGCCCCGCTCCAACTCGAGTCCCTCCGCATTCTTGGCTCCTTGG CAGACGATGACGGCCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121983:3..419+

>mRNA_M-pyrifera_M_contig121983.4518.1 ID=mRNA_M-pyrifera_M_contig121983.4518.1|Name=mRNA_M-pyrifera_M_contig121983.4518.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig121983:3..419+ (Macrocystis pyrifera P11B4 male)
ATGCTCACACTCCAGGGAGGGAAGGAGAGTGCTGCTGTGGAGCAGCCACC
GCAGATTCTCCGCGACCTCCTGCAGCACCCAGTGCTTGTCGAGAGGCTAC
CTCACGGCCTTACTGCTCTTCTACACTTTTTGGTGGGACCCCCTATTGGC
ATGAACTTGAGGAATGTGCTCTGGCATGGGTTTCTGCACCACAACGTTCC
AGAGCCATACCCTCTCCGCTCGTTCCTAGCTCTCCTGCTGCTGCTGTTCC
GTTCTGTATTGTTGCTTACATTACGTGAAGCTGAGCGAGGGGAAACACTT
GTATTGAGCCCCTTTGTGAACCATGGAGGAGCCTACGCTGCCCCGCTCCA
ACTCGAGTCCCTCCGCATTCTTGGCTCCTTGGCAGACGATGACGGCCCGA
TGCTCACACTCCAGGGAGGGAAGGAGAGTGCTGCTGTGGAGCAGCCACCG
CAGATTCTCCGCGACCTCCTGCAGCACCCAGTGCTTGTCGAGAGGCTACC
TCACGGCCTTACTGCTCTTCTACACTTTTTGGTGGGACCCCCTATTGGCA
TGAACTTGAGGAATGTGCTCTGGCATGGGTTTCTGCACCACAACGTTCCA
GAGCCATACCCTCTCCGCTCGTTCCTAGCTCTCCTGCTGCTGCTGTTCCG
TTCTGTATTGTTGCTTACATTACGTGAAGCTGAGCGAGGGGAAACACTTG
TATTGAGCCCCTTTGTGAACCATGGAGGAGCCTACGCTGCCCCGCTCCAA
CTCGAGTCCCTCCGCATTCTTGGCTCCTTGGCAGACGATGACGGCCCG
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