mRNA_M-pyrifera_M_contig121976.4517.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121976.4517.1
Unique NamemRNA_M-pyrifera_M_contig121976.4517.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Match: A0A3R7HXM5_9STRA (Protein kinase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HXM5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.940e-53
Identity = 87/161 (54.04%), Postives = 113/161 (70.19%), Query Frame = 1 
Query:    1 GTLRALAIMHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPYWMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNAPPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAHPFL 483
            G LR LA +H+  KIHRD+K  ++L+   G VK+AD GVSAQL  TL+RR TFVG+PYWM+PE++  ++YD +AD+WS+GITAIELA  +PP FDEHPM+ L+ IP  PPPQ+     A  E+      WS AF +F+ FCL KDP  RPTA  C+ H F+
Sbjct:  142 GALRGLAYLHSRRKIHRDVKGGNILLSASGQVKIADFGVSAQLRDTLSRRGTFVGTPYWMSPELIQDSDYDFKADIWSLGITAIELADQKPPLFDEHPMRVLIQIPRNPPPQV-----AHPEK------WSAAFLSFLRFCLRKDPAERPTALECMQHEFI 291
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BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Match: A0A024UC45_9STRA (STE/STE20/MST protein kinase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UC45_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.020e-50
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 1 
Query:    1 GTLRALAIMHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPYWMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNAPPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAHPFLAVTSD 498
            G L  LA +H+  KIHRD+K  ++L+   G+VK+AD GVSAQL  TL+RR TFVG+PYWM+PE++  + YD +AD+WS+GITAIELA  RPP FDEHPM+ L+ IP  PPP+L  ++  D         WS  F  FV +CL K P  RPTA ACLAHPF+    D
Sbjct:  128 GALEGLAHLHSKKKIHRDVKGGNILLTTDGNVKIADFGVSAQLRDTLSRRGTFVGTPYWMSPEMIQDSNYDYKADIWSLGITAIELADQRPPLFDEHPMRVLIQIPRNPPPRL--KQPQD---------WSANFSHFVQYCLTKSPADRPTAVACLAHPFIMCWRD 282
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BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Match: A0A662XN22_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XN22_9STRA)

HSP 1 Score: 181 bits (460), Expect = 7.070e-50
Identity = 86/161 (53.42%), Postives = 113/161 (70.19%), Query Frame = 1 
Query:    1 GTLRALAIMHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPYWMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNAPPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAHPFL 483
            G L+ LA +HA  KIHRD+K  ++L+   G VK+AD GVSAQL  TL+RR +FVG+PYWM+PE++  ++YD++AD+WS+GITAIELA  +PP FDEHPM+ L+ IP  PPPQ+     A  E+      WS AF  F+ FCL KDP  RPTA  C+ H F+
Sbjct:  142 GALQGLAYLHARRKIHRDVKGGNILLTASGQVKIADFGVSAQLRDTLSRRGSFVGTPYWMSPELIQDSDYDSKADIWSLGITAIELADQKPPLFDEHPMRVLIQIPRNPPPQV-----AHPEK------WSSAFLDFLRFCLRKDPAERPTALECMQHEFI 291
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BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Match: A0A225WI86_9STRA (STE/STE20/MST protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WI86_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.780e-49
Identity = 86/161 (53.42%), Postives = 112/161 (69.57%), Query Frame = 1 
Query:    1 GTLRALAIMHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPYWMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNAPPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAHPFL 483
            G LR LA +H+  KIHRD+K  ++L+   G VK+AD GVSAQL  TL+RR +FVG+PYWM+PE++  ++YD +AD+WS+GITAIELA  +PP FDEHPM+ L+ IP  PPPQ+     A  E+      WS AF  F+ FCL KDP  RPTA  C+ H F+
Sbjct:  141 GALRGLAYLHSRRKIHRDVKGGNILLTDSGQVKIADFGVSAQLRDTLSRRGSFVGTPYWMSPELIQDSDYDFKADIWSLGITAIELADQKPPLFDEHPMRVLIQIPRNPPPQV-----AHPEK------WSTAFLDFLRFCLRKDPAERPTAVECMKHEFI 290
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BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Match: A0A2P4XAX3_9STRA (STE/STE20/MST protein Kinase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XAX3_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.410e-49
Identity = 86/161 (53.42%), Postives = 112/161 (69.57%), Query Frame = 1 
Query:    1 GTLRALAIMHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPYWMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNAPPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAHPFL 483
            G LR LA +H+  KIHRD+K  ++L+   G VK+AD GVSAQL  TL+RR +FVG+PYWM+PE++  ++YD +AD+WS+GITAIELA  +PP FDEHPM+ L+ IP  PPPQ+     A  E+      WS AF  F+ FCL KDP  RPTA  C+ H F+
Sbjct:  141 GALRGLAYLHSRRKIHRDVKGGNILLTDSGQVKIADFGVSAQLRDTLSRRGSFVGTPYWMSPELIQDSDYDFKADIWSLGITAIELADQKPPLFDEHPMRVLIQIPRNPPPQV-----AHPEK------WSAAFLDFLRFCLRKDPAERPTAVECMKHEFI 290
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BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Match: H3GQ34_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQ34_PHYRM)

HSP 1 Score: 180 bits (456), Expect = 2.440e-49
Identity = 86/161 (53.42%), Postives = 112/161 (69.57%), Query Frame = 1 
Query:    1 GTLRALAIMHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPYWMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNAPPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAHPFL 483
            G LR LA +H+  KIHRD+K  ++L+   G VK+AD GVSAQL  TL+RR +FVG+PYWM+PE++  ++YD +AD+WS+GITAIELA  +PP FDEHPM+ L+ IP  PPPQ+     A  E+      WS AF  F+ FCL KDP  RPTA  C+ H F+
Sbjct:  141 GALRGLAYLHSRRKIHRDVKGGNILLTDAGQVKIADFGVSAQLRDTLSRRGSFVGTPYWMSPELIQDSDYDFKADIWSLGITAIELADQKPPLFDEHPMRVLIQIPRNPPPQV-----AHPEK------WSAAFLDFLRFCLRKDPAERPTALECMKHEFI 290
[Close]
BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Match: W2PP63_PHYPN (STE/STE20/MST protein kinase n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PP63_PHYPN)

HSP 1 Score: 175 bits (444), Expect = 3.440e-49
Identity = 84/161 (52.17%), Postives = 110/161 (68.32%), Query Frame = 1 
Query:    1 GTLRALAIMHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPYWMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNAPPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAHPFL 483
            G L  LA +H+  KIHRD+K  ++L+   G VK+AD GVSAQL  TL+RR +FVG+PYWM+PE++  ++YD +AD+WS+GITAIELA  +PP FDEHPM+ L+ IP  PPP +     A  E+      WS AF  F+ FCL KDP  RPTA  C+ H F+
Sbjct:  141 GALNGLAYLHSRRKIHRDVKGGNILLTDSGQVKIADFGVSAQLRDTLSRRGSFVGTPYWMSPELIQDSDYDFKADIWSLGITAIELADQKPPLFDEHPMRVLIQIPRNPPPLV-----AHPEK------WSAAFLDFLRFCLRKDPAERPTAVECMQHEFI 290
[Close]
BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Match: A0A418BAM3_9STRA (Protein kinase domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BAM3_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.000e-49
Identity = 86/164 (52.44%), Postives = 106/164 (64.63%), Query Frame = 1 
Query:    7 LRALAIMHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPYWMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNAPPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAHPFLAVTSD 498
            L+ LA +H+  KIHRD+KAA++L+   G VK+AD GV+ QL  T+ +R T VG+P+WMAPEV+  N YD +AD+WSVGITAIE+A G PP    HPMK L  IP  PPP+L            EGD +SD F  FVA CL KD   RPTA   L HPF+   SD
Sbjct:  110 LKGLAYLHSEKKIHRDVKAANILLASDGRVKLADFGVTGQLTDTMTKRNTVVGTPFWMAPEVIQQNNYDFKADIWSVGITAIEMALGSPPHASLHPMKVLFVIPKNPPPKL------------EGD-FSDKFKDFVACCLIKDATARPTALELLQHPFINSKSD 260
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BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Match: A0A0B1TE40_OESDE (Kinase domain protein n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1TE40_OESDE)

HSP 1 Score: 174 bits (441), Expect = 4.240e-49
Identity = 86/159 (54.09%), Postives = 104/159 (65.41%), Query Frame = 1 
Query:    7 LRALAIMHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPYWMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNAPPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAHPFL 483
            L+ L  +H+  KIHRDIKAA+VL+   G VKVAD GV+ QL  T+ +R TFVGSP+WMAPE++    YD +AD+WS+GITAIELA G PP  D HPM+ L  IP  PPPQL             G  WS  F  FV  CL+KDP  RP+ASA L HPF+
Sbjct:   31 LKGLDYLHSERKIHRDIKAANVLVSEQGDVKVADFGVAGQLTETVKKRITFVGSPFWMAPELIKQASYDYKADIWSLGITAIELAQGEPPHSDLHPMRVLFLIPKNPPPQLT------------GPQWSRTFKEFVELCLNKDPDNRPSASALLKHPFI 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Match: A0A833TFD3_PHYIN (RhoGAP domain n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TFD3_PHYIN)

HSP 1 Score: 178 bits (451), Expect = 1.120e-48
Identity = 85/161 (52.80%), Postives = 111/161 (68.94%), Query Frame = 1 
Query:    1 GTLRALAIMHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPYWMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNAPPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAHPFL 483
            G L  LA +H+  KIHRD+K  ++L+   G VK+AD GVSAQL  TL+RR +FVG+PYWM+PE++  ++YD +AD+WS+GITAIELA  +PP FDEHPM+ L+ IP  PPPQ+     A  E+      WS AF  F+ FCL KDP  RPTA  C+ H F+
Sbjct:  141 GALNGLAYLHSRRKIHRDVKGGNILLTDSGQVKIADFGVSAQLRDTLSRRGSFVGTPYWMSPELIQDSDYDFKADIWSLGITAIELADQKPPLFDEHPMRVLIQIPRNPPPQV-----AHPEK------WSAAFLDFLRFCLRKDPAERPTAVECMQHEFI 290
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121976.4517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3R7HXM5_9STRA1.940e-5354.04Protein kinase domain-containing protein n=3 Tax=P... [more]
A0A024UC45_9STRA1.020e-5053.61STE/STE20/MST protein kinase n=2 Tax=Aphanomyces i... [more]
A0A662XN22_9STRA7.070e-5053.42Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A225WI86_9STRA1.780e-4953.42STE/STE20/MST protein kinase n=1 Tax=Phytophthora ... [more]
A0A2P4XAX3_9STRA2.410e-4953.42STE/STE20/MST protein Kinase n=1 Tax=Phytophthora ... [more]
H3GQ34_PHYRM2.440e-4953.42Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
W2PP63_PHYPN3.440e-4952.17STE/STE20/MST protein kinase n=1 Tax=Phytophthora ... [more]
A0A418BAM3_9STRA4.000e-4952.44Protein kinase domain-containing protein n=3 Tax=A... [more]
A0A0B1TE40_OESDE4.240e-4954.09Kinase domain protein n=1 Tax=Oesophagostomum dent... [more]
A0A833TFD3_PHYIN1.120e-4852.80RhoGAP domain n=2 Tax=Phytophthora infestans TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121976contigM-pyrifera_M_contig121976:2..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.6
Seed ortholog evalue4.7e-42
Seed eggNOG ortholog157072.XP_008867661.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hippo signaling
EggNOG OGsKOG0574@1,KOG0574@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size474
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.922968-UTR-M-pyrifera_M_contig121976:1..251622815738.922968-UTR-M-pyrifera_M_contig121976:1..25Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121976 2..25 +
1692277546.414588-UTR-M-pyrifera_M_contig121976:1..251692277546.414588-UTR-M-pyrifera_M_contig121976:1..25Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121976 2..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.9362624-CDS-M-pyrifera_M_contig121976:25..4991622815738.9362624-CDS-M-pyrifera_M_contig121976:25..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121976 26..499 +
1692277546.425906-CDS-M-pyrifera_M_contig121976:25..4991692277546.425906-CDS-M-pyrifera_M_contig121976:25..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121976 26..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121976.4517.1prot_M-pyrifera_M_contig121976.4517.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121976 26..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121976.4517.1

>prot_M-pyrifera_M_contig121976.4517.1 ID=prot_M-pyrifera_M_contig121976.4517.1|Name=mRNA_M-pyrifera_M_contig121976.4517.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
MHAHNKIHRDIKAAHVLIDPGGSVKVADVGVSAQLVHTLARRATFVGSPY
WMAPEVVSGNEYDARADVWSVGITAIELAAGRPPRFDEHPMKALLAIPNA
PPPQLPPREAADEEEAGEGDGWSDAFHAFVAFCLDKDPVGRPTASACLAH
PFLAVTSD
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mRNA from alignment at M-pyrifera_M_contig121976:2..499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121976.4517.1 ID=mRNA_M-pyrifera_M_contig121976.4517.1|Name=mRNA_M-pyrifera_M_contig121976.4517.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig121976:2..499+ (Macrocystis pyrifera P11B4 male)
GGCACGCTCCGCGCCCTGGCGATCATGCACGCGCACAACAAGATCCACCG
CGACATCAAGGCCGCCCACGTGCTGATCGACCCCGGCGGCAGCGTGAAGG
TGGCGGACGTCGGCGTGTCCGCGCAGCTCGTGCACACCCTGGCCCGTCGC
GCCACTTTCGTCGGCTCGCCGTACTGGATGGCGCCAGAGGTGGTGTCTGG
CAACGAGTACGATGCGCGGGCGGACGTGTGGAGCGTCGGCATCACAGCGA
TCGAGCTGGCCGCGGGCCGGCCGCCTCGCTTCGACGAGCACCCAATGAAG
GCGCTTCTCGCCATCCCCAACGCGCCGCCGCCGCAGCTGCCGCCACGCGA
GGCGGCCGACGAGGAGGAGGCGGGGGAGGGTGACGGGTGGAGCGATGCGT
TCCACGCGTTCGTCGCGTTCTGCCTGGACAAGGACCCTGTGGGGCGGCCG
ACGGCGTCGGCGTGTCTGGCGCACCCGTTTCTGGCCGTTACTTCCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121976:2..499+

>mRNA_M-pyrifera_M_contig121976.4517.1 ID=mRNA_M-pyrifera_M_contig121976.4517.1|Name=mRNA_M-pyrifera_M_contig121976.4517.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig121976:2..499+ (Macrocystis pyrifera P11B4 male)
ATGCACGCGCACAACAAGATCCACCGCGACATCAAGGCCGCCCACGTGCT
GATCGACCCCGGCGGCAGCGTGAAGGTGGCGGACGTCGGCGTGTCCGCGC
AGCTCGTGCACACCCTGGCCCGTCGCGCCACTTTCGTCGGCTCGCCGTAC
TGGATGGCGCCAGAGGTGGTGTCTGGCAACGAGTACGATGCGCGGGCGGA
CGTGTGGAGCGTCGGCATCACAGCGATCGAGCTGGCCGCGGGCCGGCCGC
CTCGCTTCGACGAGCACCCAATGAAGGCGCTTCTCGCCATCCCCAACGCG
CCGCCGCCGCAGCTGCCGCCACGCGAGGCGGCCGACGAGGAGGAGGCGGG
GGAGGGTGACGGGTGGAGCGATGCGTTCCACGCGTTCGTCGCGTTCTGCC
TGGACAAGGACCCTGTGGGGCGGCCGACGGCGTCGGCGTGTCTGGCGCAC
CCGTTTCTGGCCGTTACTTCCGACATGCACGCGCACAACAAGATCCACCG
CGACATCAAGGCCGCCCACGTGCTGATCGACCCCGGCGGCAGCGTGAAGG
TGGCGGACGTCGGCGTGTCCGCGCAGCTCGTGCACACCCTGGCCCGTCGC
GCCACTTTCGTCGGCTCGCCGTACTGGATGGCGCCAGAGGTGGTGTCTGG
CAACGAGTACGATGCGCGGGCGGACGTGTGGAGCGTCGGCATCACAGCGA
TCGAGCTGGCCGCGGGCCGGCCGCCTCGCTTCGACGAGCACCCAATGAAG
GCGCTTCTCGCCATCCCCAACGCGCCGCCGCCGCAGCTGCCGCCACGCGA
GGCGGCCGACGAGGAGGAGGCGGGGGAGGGTGACGGGTGGAGCGATGCGT
TCCACGCGTTCGTCGCGTTCTGCCTGGACAAGGACCCTGTGGGGCGGCCG
ACGGCGTCGGCGTGTCTGGCGCACCCGTTTCTGGCCGTTACTTCCGAC
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