mRNA_M-pyrifera_M_contig121946.4507.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121946.4507.1
Unique NamemRNA_M-pyrifera_M_contig121946.4507.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Match: A0A5B9NH46_9CAUD (Lysozyme n=2 Tax=unclassified Siphoviridae TaxID=196894 RepID=A0A5B9NH46_9CAUD)

HSP 1 Score: 57.8 bits (138), Expect = 5.320e-8
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 PIAETTTTAPPPTTQLNYVVQSGDSLSVIASRFGISTDELANFNAISDVNSIVVGQELSI 180
            P+A+  TT    T    Y V+SGD+LSVIA +FG++T +L N+N ISD N I VGQ+L +
Sbjct:  205 PVAKKPTTKEKVTAVTTYTVKSGDALSVIAQKFGVTTKDLQNWNGISDPNKIYVGQKLRV 264          
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Match: A0A1W9UMB8_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineaceae bacterium 4572_32.1 TaxID=1971623 RepID=A0A1W9UMB8_9CHLR)

HSP 1 Score: 56.6 bits (135), Expect = 1.510e-7
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    4 IAETTTTAPPPTTQLNYVVQSGDSLSVIASRFGISTDELANFNAISDVNSIVVGQELSIPPTTVATP 204
            I   +T +P PT   +Y+VQ GD+LS+IA RFG + + +A  N I + N I+VGQ L+IP T  ATP
Sbjct:   79 IVPLSTVSPLPTHPADYLVQLGDTLSLIAQRFGTTVETIAQANGIVNPNLIIVGQSLTIPITQGATP 145          
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Match: A0A4P5RV71_9ACTN (LysM domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A4P5RV71_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 3.370e-7
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    4 IAETTTTAPPPTTQLN------YVVQSGDSLSVIASRFGISTDELANFNAISDVNSIVVGQELSIP 183
            IA TTTT PP TT         Y+VQSGDS+S IAS+F +S  ++   N ++D + I  GQ+L IP
Sbjct:   27 IAVTTTTIPPTTTLAPDTEYQMYLVQSGDSVSYIASQFNVSVGDIVALNGLADADDIQAGQKLKIP 92          
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Match: A0A6L6BPW0_9ACTN (LysM peptidoglycan-binding domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6L6BPW0_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 4.050e-7
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    4 IAETTTTAPPPTTQL------NYVVQSGDSLSVIASRFGISTDELANFNAISDVNSIVVGQELSIP 183
            IA TTTT PP +T         Y+VQSGDS+S IAS+F +S +++   N ++D + I  GQ+L IP
Sbjct:   36 IAVTTTTIPPTSTLAPDTEYQTYLVQSGDSVSYIASQFNVSVNDIVALNGLADADDIQAGQKLKIP 101          
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Match: A0A424YKE8_9FIRM (LysM peptidoglycan-binding domain-containing protein n=2 Tax=unclassified Halanaerobium TaxID=2641197 RepID=A0A424YKE8_9FIRM)

HSP 1 Score: 54.7 bits (130), Expect = 6.560e-7
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   34 PTTQLNYVVQSGDSLSVIASRFGISTDELANFNAISDVNSIVVGQELSIP 183
            P   L YV+Q GD+LS IAS FGIST+EL NFN I+   SI +G+EL IP
Sbjct:   27 PNLTLVYVIQQGDTLSEIASDFGISTNELRNFNEINSNFSIKMGEELLIP 76          
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Match: UPI00200D347A (phage tail tip lysozyme n=3 Tax=Lactobacillaceae TaxID=33958 RepID=UPI00200D347A)

HSP 1 Score: 54.3 bits (129), Expect = 9.820e-7
Identity = 25/46 (54.35%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   43 QLNYVVQSGDSLSVIASRFGISTDELANFNAISDVNSIVVGQELSI 180
            +++Y VQSGD+LS IA+RFG+S  +L+++N ISD N I +GQ LS+
Sbjct:  332 KVSYTVQSGDTLSGIAARFGVSVSQLSSWNGISDPNKIYIGQVLSV 377          
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Match: A0A2M8PDG2_9CHLR (Uncharacterized protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A2M8PDG2_9CHLR)

HSP 1 Score: 53.1 bits (126), Expect = 1.490e-6
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   49 NYVVQSGDSLSVIASRFGISTDELANFNAISDVNSIVVGQELSIPPTTVATPESTT 216
            +Y VQ GD+L++IA+RFG +   + + N ISD N I VGQ LSIP TT A   S+T
Sbjct:  107 SYTVQRGDTLALIAARFGTTVAAILSVNGISDPNRIFVGQRLSIPRTTAAPVVSST 162          
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Match: A0A2M8P4Y6_9CHLR (Uncharacterized protein n=1 Tax=Phototrophicales bacterium TaxID=2364211 RepID=A0A2M8P4Y6_9CHLR)

HSP 1 Score: 53.5 bits (127), Expect = 1.820e-6
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   28 PPPTTQLNYVVQSGDSLSVIASRFGISTDELANFNAISDVNSIVVGQELSIP 183
            PPPTT ++Y +Q G++L +IA R+G+S   LA  N I D N I+ GQ + IP
Sbjct:  190 PPPTTNISYTIQPGETLGMIAQRYGMSWTTLAQMNGIYDPNRILAGQTIVIP 241          
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Match: A0A419EHL5_9CHLR (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A419EHL5_9CHLR)

HSP 1 Score: 53.5 bits (127), Expect = 1.850e-6
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   52 YVVQSGDSLSVIASRFGISTDELANFNAISDVNSIVVGQELSIP 183
            Y+VQSGDSLS IASRF +S +EL + N I+D N +  GQ+L IP
Sbjct:   40 YIVQSGDSLSSIASRFNVSMNELMSTNGITDPNQLTAGQQLIIP 83          
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Match: A0A1T0CKF9_9GAMM (Uncharacterized protein n=1 Tax=Moraxella lincolnii TaxID=90241 RepID=A0A1T0CKF9_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 2.420e-6
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   49 NYVVQSGDSLSVIASRFGISTDELANFNAISDVNSIVVGQELSIPPTTVAT 201
            +YV++SGD+LS++A+R+G+S  +LAN N IS    IV GQ+L +P T + T
Sbjct:  127 SYVIKSGDNLSMLANRYGVSVAQLANLNRISPQTIIVAGQKLVVPTTPINT 177          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121946.4507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5B9NH46_9CAUD5.320e-850.00Lysozyme n=2 Tax=unclassified Siphoviridae TaxID=1... [more]
A0A1W9UMB8_9CHLR1.510e-747.76Uncharacterized protein n=1 Tax=Anaerolineaceae ba... [more]
A0A4P5RV71_9ACTN3.370e-746.97LysM domain-containing protein n=5 Tax=root TaxID=... [more]
A0A6L6BPW0_9ACTN4.050e-745.45LysM peptidoglycan-binding domain-containing prote... [more]
A0A424YKE8_9FIRM6.560e-760.00LysM peptidoglycan-binding domain-containing prote... [more]
UPI00200D347A9.820e-754.35phage tail tip lysozyme n=3 Tax=Lactobacillaceae T... [more]
A0A2M8PDG2_9CHLR1.490e-651.79Uncharacterized protein n=2 Tax=Chloroflexi TaxID=... [more]
A0A2M8P4Y6_9CHLR1.820e-648.08Uncharacterized protein n=1 Tax=Phototrophicales b... [more]
A0A419EHL5_9CHLR1.850e-659.09LysM peptidoglycan-binding domain-containing prote... [more]
A0A1T0CKF9_9GAMM2.420e-649.02Uncharacterized protein n=1 Tax=Moraxella lincolni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121946contigM-pyrifera_M_contig121946:77..307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.4202132-CDS-M-pyrifera_M_contig121946:76..3071622815738.4202132-CDS-M-pyrifera_M_contig121946:76..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121946 77..307 -
1692277546.1611319-CDS-M-pyrifera_M_contig121946:76..3071692277546.1611319-CDS-M-pyrifera_M_contig121946:76..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121946 77..307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121946.4507.1prot_M-pyrifera_M_contig121946.4507.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121946 77..307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121946.4507.1

>prot_M-pyrifera_M_contig121946.4507.1 ID=prot_M-pyrifera_M_contig121946.4507.1|Name=mRNA_M-pyrifera_M_contig121946.4507.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
PIAETTTTAPPPTTQLNYVVQSGDSLSVIASRFGISTDELANFNAISDVN
SIVVGQELSIPPTTVATPESTTTVAG*
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mRNA from alignment at M-pyrifera_M_contig121946:77..307-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121946.4507.1 ID=mRNA_M-pyrifera_M_contig121946.4507.1|Name=mRNA_M-pyrifera_M_contig121946.4507.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig121946:77..307- (Macrocystis pyrifera P11B4 male)
CCGATCGCCGAGACCACCACCACCGCCCCTCCCCCCACCACACAGCTCAA CTACGTCGTGCAGTCCGGCGACTCTCTGTCGGTGATCGCCAGCCGCTTCG GCATCAGCACCGACGAACTGGCGAACTTCAACGCCATCTCCGACGTGAAC TCGATCGTCGTCGGCCAAGAACTCTCGATCCCGCCGACCACGGTCGCCAC TCCTGAGTCGACCACCACGGTTGCCGGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121946:77..307-

>mRNA_M-pyrifera_M_contig121946.4507.1 ID=mRNA_M-pyrifera_M_contig121946.4507.1|Name=mRNA_M-pyrifera_M_contig121946.4507.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig121946:77..307- (Macrocystis pyrifera P11B4 male)
CCGATCGCCGAGACCACCACCACCGCCCCTCCCCCCACCACACAGCTCAA
CTACGTCGTGCAGTCCGGCGACTCTCTGTCGGTGATCGCCAGCCGCTTCG
GCATCAGCACCGACGAACTGGCGAACTTCAACGCCATCTCCGACGTGAAC
TCGATCGTCGTCGGCCAAGAACTCTCGATCCCGCCGACCACGGTCGCCAC
TCCTGAGTCGACCACCACGGTTGCCGGGTAGCCGATCGCCGAGACCACCA
CCACCGCCCCTCCCCCCACCACACAGCTCAACTACGTCGTGCAGTCCGGC
GACTCTCTGTCGGTGATCGCCAGCCGCTTCGGCATCAGCACCGACGAACT
GGCGAACTTCAACGCCATCTCCGACGTGAACTCGATCGTCGTCGGCCAAG
AACTCTCGATCCCGCCGACCACGGTCGCCACTCCTGAGTCGACCACCACG
GTTGCCGGGTAG
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