mRNA_M-pyrifera_M_contig121939.4505.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121939.4505.1
Unique NamemRNA_M-pyrifera_M_contig121939.4505.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: A0A388K0P8_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K0P8_CHABU)

HSP 1 Score: 57.0 bits (136), Expect = 1.800e-7
Identity = 34/92 (36.96%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   19 GALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTNVSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
            G L GTLS SDFRGLD   ++ +  M V +F++    + V  P  VSC  +  +  V+ + L+  VHR WV DE      +++ TD++ AI+
Sbjct:  151 GKLVGTLSASDFRGLDPKAIQEMHVMPVMEFVSRTCGSGVPLPL-VSCRPTTPLATVMAEALIAEVHRVWVTDEESRLLGVVTFTDMIRAIK 241          
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: UPI000B8C8ED9 (SNF1-related protein kinase regulatory subunit gamma-like PV42a n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C8ED9)

HSP 1 Score: 57.0 bits (136), Expect = 2.660e-7
Identity = 35/100 (35.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:    1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVG--APTNVSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
            +VN     L GT S +D RG   + +      +   F       Q G  A   VSC    ++GEV+ K +   VHR WVVDE    + L+SL+DI+ A+R
Sbjct:  263 LVNGKGRKLIGTFSATDLRGCHLATLETWLPQTALDFTEKVSTLQAGPRARELVSCSADESLGEVINKAVSKHVHRLWVVDENGFLQGLVSLSDIIKALR 362          
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: A0A565B2Q7_9BRAS (CBS domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565B2Q7_9BRAS)

HSP 1 Score: 57.0 bits (136), Expect = 2.670e-7
Identity = 33/97 (34.02%), Postives = 52/97 (53.61%), Query Frame = 1
Query:   31 GTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN-------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIRLS 300
            GT S SD +G   + +R+   ++  +F+    R  + AP         V+C  S T+ +V+  +   RVHR WVVD  D  + L+SLTDI+ A+R +
Sbjct:  271 GTFSASDLKGCHLATLRSWLPLNALEFVEKIPRTPLFAPDTSTPGRELVTCHVSFTLDQVIRMVTTKRVHRVWVVDHNDKLQGLVSLTDIIGAVRFA 367          
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: R0I885_9BRAS (Uncharacterized protein n=5 Tax=Camelineae TaxID=980083 RepID=R0I885_9BRAS)

HSP 1 Score: 56.6 bits (135), Expect = 3.540e-7
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   31 GTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQ----VGAPTN--VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
            GT S SD +G   + +R+   ++  +F+    R+     V  P    V+C  + T+G+V+  + + RVHR WVVD+ D  + L+SLTDI+ A+R
Sbjct:  241 GTFSASDLKGCHLATLRSWLPLNALEFVEKIPRSPLFTVVDTPGRELVTCHVTSTLGKVLRMVTMKRVHRVWVVDQNDGLQGLVSLTDIIAAVR 334          
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: A9URX9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9URX9_MONBE)

HSP 1 Score: 56.2 bits (134), Expect = 4.570e-7
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   19 GALEGTLSCSDFRG-LDSSNVRAVCDMSVAQFLA----DKRRAQVGAPTNVSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAI 291
            GA+ G LS  D RG L    V A    SV +++A    D+ R+++  P  ++C    T+GEV+ KL + R+HR +VVD    P   ++L+D+L A+
Sbjct:  213 GAIIGNLSVRDIRGALTGKRVFAALHKSVTEYIACNAPDRERSEM-LPA-ITCSSQTTLGEVISKLAVSRIHRVYVVDASGLPIRTITLSDVLAAL 306          
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: D7U140_VITVI (CBS domain-containing protein n=3 Tax=Vitis TaxID=3603 RepID=D7U140_VITVI)

HSP 1 Score: 56.2 bits (134), Expect = 4.930e-7
Identity = 33/108 (30.56%), Postives = 52/108 (48.15%), Query Frame = 1
Query:    1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN--------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIRLS 300
            ++N     L GT S +D RG   + +++   +SV  F      + +   TN        V+C     +GE + K +   VHR WVVD       L+SLTD++ A+R+S
Sbjct:  246 LINGKGRKLIGTFSATDLRGCPVTQLQSWLPLSVMDFTEKVSTSPLHGSTNSRSPWRELVTCFAESCLGEAIDKAVAKHVHRVWVVDRQGSLVGLVSLTDMIRAVRIS 353          
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: A0A5J5BGX7_9ASTE (CBS domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BGX7_9ASTE)

HSP 1 Score: 56.2 bits (134), Expect = 4.990e-7
Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = 1
Query:    1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN--------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
            ++N    A+ GTLS +D RG   S +++     V +F+     + + A ++        V C    ++ EV+ K +   VHR WVVD+      L+SLTD++ AIR
Sbjct:  264 LLNVKGRAIVGTLSATDLRGCPISQLQSWLQTDVLEFIGKLWASPLHATSDFGRSSRELVVCCAKSSLAEVIDKAITKHVHRVWVVDQLGLLVGLISLTDMIRAIR 369          
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: A0A438HIV6_VITVI (Topless-related protein 4 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HIV6_VITVI)

HSP 1 Score: 56.2 bits (134), Expect = 5.630e-7
Identity = 33/108 (30.56%), Postives = 52/108 (48.15%), Query Frame = 1
Query:    1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN--------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIRLS 300
            ++N     L GT S +D RG   + +++   +SV  F      + +   TN        V+C     +GE + K +   VHR WVVD       L+SLTD++ A+R+S
Sbjct: 1859 LINGKGRKLIGTFSATDLRGCPVTQLQSWLPLSVMDFTEKVSTSPLHGSTNSRSPWRELVTCFAESCLGEAIDKAVAKHVHRVWVVDRQGSLVGLVSLTDMIRAVRIS 1966          
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: UPI00053C98CA (SNF1-related protein kinase regulatory subunit gamma-like PV42b n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C98CA)

HSP 1 Score: 55.1 bits (131), Expect = 1.280e-6
Identity = 32/105 (30.48%), Postives = 54/105 (51.43%), Query Frame = 1
Query:    1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN-------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
            +VN  +  ++GT S SD +G   + ++    +   +F        + A T        V+C  + T+ +V+ K+   RVHR WVVDE    + L+SLTD++ A+R
Sbjct:  277 LVNGKNRKVKGTFSASDLKGCHLATLQTWLPLMAVEFAEKIPMTPLFAGTRGASPRELVTCQATSTLAQVIQKVTTKRVHRVWVVDEDGRLQGLVSLTDVIGAVR 381          
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Match: V4KBE8_EUTSA (CBS domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KBE8_EUTSA)

HSP 1 Score: 54.7 bits (130), Expect = 1.720e-6
Identity = 33/105 (31.43%), Postives = 54/105 (51.43%), Query Frame = 1
Query:    1 IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPTN-------VSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIR 294
            +V+  +  + GT S SD +G   + +R+   ++  +F     R  + A          V+C  + T+ +V+  +   RVHR WVVD  D  + LLSLTDI+ A+R
Sbjct:  244 LVDGKNRRVVGTFSSSDLKGCHLATLRSWLPLNALEFAEKIPRTPLFAAATSTPGRELVTCHVTSTLAQVISMVTAKRVHRFWVVDHNDGLQGLLSLTDIIAAVR 348          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121939.4505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A388K0P8_CHABU1.800e-736.96Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI000B8C8ED92.660e-735.00SNF1-related protein kinase regulatory subunit gam... [more]
A0A565B2Q7_9BRAS2.670e-734.02CBS domain-containing protein n=1 Tax=Arabis nemor... [more]
R0I885_9BRAS3.540e-735.11Uncharacterized protein n=5 Tax=Camelineae TaxID=9... [more]
A9URX9_MONBE4.570e-736.46Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
D7U140_VITVI4.930e-730.56CBS domain-containing protein n=3 Tax=Vitis TaxID=... [more]
A0A5J5BGX7_9ASTE4.990e-731.13CBS domain-containing protein n=1 Tax=Nyssa sinens... [more]
A0A438HIV6_VITVI5.630e-730.56Topless-related protein 4 n=2 Tax=Vitis vinifera T... [more]
UPI00053C98CA1.280e-630.48SNF1-related protein kinase regulatory subunit gam... [more]
V4KBE8_EUTSA1.720e-631.43CBS domain-containing protein n=2 Tax=Eutrema sals... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121939contigM-pyrifera_M_contig121939:222..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue8.3e-08
Seed eggNOG ortholog4113.PGSC0003DMT400073355
KEGG koko:K07200
KEGG Pathwayko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0006935,GO:0007275,GO:0008150,GO:0009553,GO:0009555,GO:0009605,GO:0009791,GO:0009856,GO:0009908,GO:0010183,GO:0022414,GO:0032501,GO:0032502,GO:0040011,GO:0042221,GO:0042330,GO:0044706,GO:0048229,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0048868,GO:0050896,GO:0050918,GO:0051704,GO:0061458,GO:0090567,GO:0099402
EggNOG free text desc.Domain in cystathionine beta-synthase and other proteins.
EggNOG OGs37NDM@33090,3G8GD@35493,44H45@71274,COG0517@1,KOG1764@2759
COG Functional cat.C
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.3358328-CDS-M-pyrifera_M_contig121939:221..5271622815738.3358328-CDS-M-pyrifera_M_contig121939:221..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121939 222..527 -
1692277546.1204908-CDS-M-pyrifera_M_contig121939:221..5271692277546.1204908-CDS-M-pyrifera_M_contig121939:221..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121939 222..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121939.4505.1prot_M-pyrifera_M_contig121939.4505.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121939 222..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121939.4505.1

>prot_M-pyrifera_M_contig121939.4505.1 ID=prot_M-pyrifera_M_contig121939.4505.1|Name=mRNA_M-pyrifera_M_contig121939.4505.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
IVNPSSGALEGTLSCSDFRGLDSSNVRAVCDMSVAQFLADKRRAQVGAPT
NVSCLRSHTVGEVVGKLLLHRVHRAWVVDEFDCPEDLLSLTDILCAIRLS
E*
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mRNA from alignment at M-pyrifera_M_contig121939:222..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121939.4505.1 ID=mRNA_M-pyrifera_M_contig121939.4505.1|Name=mRNA_M-pyrifera_M_contig121939.4505.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig121939:222..527- (Macrocystis pyrifera P11B4 male)
ATCGTCAACCCTTCGTCGGGGGCCCTCGAGGGTACCCTCTCCTGCAGTGA TTTCCGCGGCCTCGACAGCTCCAACGTTCGAGCAGTGTGCGACATGAGTG TCGCACAGTTCCTCGCAGACAAGAGGAGGGCACAGGTCGGCGCACCCACC AATGTCTCTTGTCTGCGCTCACACACAGTTGGGGAAGTGGTGGGGAAGCT CCTCCTCCACCGCGTGCACCGAGCGTGGGTTGTGGACGAATTCGACTGCC CCGAGGACCTCCTCAGCCTCACTGACATCCTCTGCGCAATCCGCTTGAGT GAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121939:222..527-

>mRNA_M-pyrifera_M_contig121939.4505.1 ID=mRNA_M-pyrifera_M_contig121939.4505.1|Name=mRNA_M-pyrifera_M_contig121939.4505.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig121939:222..527- (Macrocystis pyrifera P11B4 male)
ATCGTCAACCCTTCGTCGGGGGCCCTCGAGGGTACCCTCTCCTGCAGTGA
TTTCCGCGGCCTCGACAGCTCCAACGTTCGAGCAGTGTGCGACATGAGTG
TCGCACAGTTCCTCGCAGACAAGAGGAGGGCACAGGTCGGCGCACCCACC
AATGTCTCTTGTCTGCGCTCACACACAGTTGGGGAAGTGGTGGGGAAGCT
CCTCCTCCACCGCGTGCACCGAGCGTGGGTTGTGGACGAATTCGACTGCC
CCGAGGACCTCCTCAGCCTCACTGACATCCTCTGCGCAATCCGCTTGAGT
GAGTGAATCGTCAACCCTTCGTCGGGGGCCCTCGAGGGTACCCTCTCCTG
CAGTGATTTCCGCGGCCTCGACAGCTCCAACGTTCGAGCAGTGTGCGACA
TGAGTGTCGCACAGTTCCTCGCAGACAAGAGGAGGGCACAGGTCGGCGCA
CCCACCAATGTCTCTTGTCTGCGCTCACACACAGTTGGGGAAGTGGTGGG
GAAGCTCCTCCTCCACCGCGTGCACCGAGCGTGGGTTGTGGACGAATTCG
ACTGCCCCGAGGACCTCCTCAGCCTCACTGACATCCTCTGCGCAATCCGC
TTGAGTGAGTGA
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