mRNA_M-pyrifera_M_contig121934.4504.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121934.4504.1
Unique NamemRNA_M-pyrifera_M_contig121934.4504.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Match: A0A8J1TXA5_OWEFU (Ofus.G073102 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TXA5_OWEFU)

HSP 1 Score: 149 bits (376), Expect = 6.800e-39
Identity = 73/149 (48.99%), Postives = 102/149 (68.46%), Query Frame = 1
Query:    1 LDNLQARLYMDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETADIAYCTLKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLFQDTANLSDRLSER--DPELLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRNNA 441
            LDN++AR YMD+R V+NQ AL++SGT+GAKGHVQV+VPH +ESY SQRDP   D+ YCTLKSFP++++HCI WARD  FE  F  KP+ F  F  +   +D + +R  +   ++S   ++ MV +KP  +  CV   R  FE++F + A
Sbjct:  593 LDNVEARKYMDSRCVTNQRALLESGTMGAKGHVQVIVPHLTESYSSQRDPPDEDVPYCTLKSFPATIEHCIQWARDK-FESSFCQKPALFNKFWSSNGSADDVIQRLLEGSAIESATQISKMVRNKPTSWPLCVTLARLKFEKYFNHRA 740          
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Match: UPI001458A445 (ubiquitin-like modifier-activating enzyme 6 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458A445)

HSP 1 Score: 143 bits (361), Expect = 6.310e-38
Identity = 69/149 (46.31%), Postives = 99/149 (66.44%), Query Frame = 1
Query:    1 LDNLQARLYMDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETADIAYCTLKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLFQDTANLSDRLSE--RDPELLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRNNA 441
            LDN++AR Y+D+R V+NQ AL++SGT+G KGHVQV++PH +ESYGSQRDP   DI YCTLKSFP+ ++HCI W+RD  FE  F  KP+ F  F  T     ++ E  +    L+  + ++ ++  KP+ +  CV   R  FE++F + A
Sbjct:  209 LDNVEARRYVDSRCVTNQKALLESGTMGTKGHVQVIIPHLTESYGSQRDPVDEDIPYCTLKSFPAQIEHCIQWSRDK-FESSFVQKPALFNKFWTTQGQPQQVIETLKRGSPLEGAIQISKILRSKPVNWCTCVVLARLKFEKYFNHKA 356          
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Match: A0A210QVC5_MIZYE (Ubiquitin-like modifier-activating enzyme 6 n=4 Tax=Pectinidae TaxID=6566 RepID=A0A210QVC5_MIZYE)

HSP 1 Score: 145 bits (366), Expect = 1.500e-37
Identity = 73/151 (48.34%), Postives = 99/151 (65.56%), Query Frame = 1
Query:    1 LDNLQARLYMDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETADIAYCTLKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLFQDTAN----LSDRLSERDPELLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRNNA 441
            LDN++AR Y+D+R V+NQ AL++SGT+G KGHVQV++PH +ESYGSQRDP   DI YCTLKSFP+ ++HCI WARD  FE  F  KP+ F  F  T      +   L    P  L+  + V+ +V  KP+ + +CV   R  FE++F + A
Sbjct:  540 LDNVEARRYVDSRCVTNQKALLESGTMGTKGHVQVIIPHLTESYGSQRDPVDEDIPYCTLKSFPAQIEHCIQWARDK-FESSFAQKPALFNKFWTTQGQPLKVIHNLKRGSP--LEGAIQVSKIVRSKPVEWCECVVLARLKFEKYFNHRA 687          
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Match: L8HGS4_ACACA (Ubiquitinlike modifier-activating enzyme 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGS4_ACACA)

HSP 1 Score: 142 bits (359), Expect = 1.320e-36
Identity = 67/145 (46.21%), Postives = 96/145 (66.21%), Query Frame = 1
Query:    1 LDNLQARLYMDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETADIAYCTLKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLFQDTANLSDRLSERDPELLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRN 435
            LDN+QARLY+D R V+NQ  L++SGTL  KGHVQV+VP  +ESYGS+RDP   D+ +CTLKSFP+ + H I WARD  F + F +KP +       +++ + L  +    LK+      M+E +P  F +C+A+GR  F+++FRN
Sbjct:  542 LDNVQARLYVDGRCVTNQRPLLESGTLSTKGHVQVIVPFLTESYGSRRDPPEKDVPFCTLKSFPNQIQHTIQWARDK-FANLFSLKPQELNKLLAESDVIEELRTQPGNKLKNAQHALKMLESRPNSFEECIAYGRLKFDKYFRN 685          
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Match: R7U3Z5_CAPTE (UBA_e1_C domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U3Z5_CAPTE)

HSP 1 Score: 142 bits (357), Expect = 2.440e-36
Identity = 72/149 (48.32%), Postives = 96/149 (64.43%), Query Frame = 1
Query:    1 LDNLQARLYMDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETADIAYCTLKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLFQDTANLSDRLSER--DPELLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRNNA 441
            LDNL+AR YMD+R V+NQ  L++SGT+G+KGHVQV+VPH +ESY SQRDP   DI YCTLKSFP+ ++HCI WARD  FE  F  KP+ F  F      SD L  R    + ++     A ++  +P+ + DCV   R  F ++F + A
Sbjct:  528 LDNLEARRYMDSRCVTNQRPLLESGTMGSKGHVQVIVPHLTESYSSQRDPPDEDIPYCTLKSFPAQIEHCIQWARDK-FESSFSQKPALFNKFWSEHPDSDALIARLKGGQAVEGSFQTARIMRSRPLTWPDCVQMARLKFNKYFNHRA 675          
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Match: A0A3M7S9P4_BRAPC (Ubiquitin-like modifier-activating enzyme 6 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7S9P4_BRAPC)

HSP 1 Score: 142 bits (357), Expect = 2.440e-36
Identity = 74/153 (48.37%), Postives = 101/153 (66.01%), Query Frame = 1
Query:    1 LDNLQARLYMDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETA--DIAYCTLKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLFQDT----ANLSDRLSERDPELLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRNNA 441
            LDNL+AR YMD+R V+NQ ALI+SGTLGAKGHVQV++P  +ESY SQ+DP  +  D+ YCTLKSFPS+++HCI W+RD  FE  F++KP     F D      NL D+L++ D   ++ +      V +    +SDC+   R  FE++F N A
Sbjct:  514 LDNLEARRYMDSRCVTNQRALIESGTLGAKGHVQVILPFLTESYNSQKDPNESEGDVPYCTLKSFPSNIEHCIQWSRDK-FESLFKIKPVMVNKFVDKNSNLTNLLDKLADDDHFGVEDLHKFCKFVRNYCHSYSDCLCLARRKFEKYFANKA 665          
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Match: A0A6J8BIU4_MYTCO (UBE1L2 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BIU4_MYTCO)

HSP 1 Score: 141 bits (356), Expect = 3.100e-36
Identity = 71/151 (47.02%), Postives = 102/151 (67.55%), Query Frame = 1
Query:    1 LDNLQARLYMDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETADIAYCTLKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLF----QDTANLSDRLSERDPELLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRNNA 441
            LDN++AR Y+D+R V+NQ  L++SGT+G KGHVQV+VPH +ESYGSQRDP   D+ YCTLKSFP++++HCI WARD  FE  F  KPS F  F    +D  ++  +L   D   +   + V+ ++ ++   +SDC+  GR  FE++F + A
Sbjct:  400 LDNVEARRYVDSRCVTNQRPLLESGTMGTKGHVQVIVPHITESYGSQRDPVDEDVPYCTLKSFPATIEHCIQWARDK-FESSFVQKPSMFNKFWSKNKDAQDVIQKLL--DGSSIDGGVQVSKILHNRSATWSDCIKLGRLKFEKYFNHRA 547          
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Match: A0A813YH24_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813YH24_9BILA)

HSP 1 Score: 141 bits (356), Expect = 3.330e-36
Identity = 72/150 (48.00%), Postives = 101/150 (67.33%), Query Frame = 1
Query:    1 LDNLQARLYMDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETAD--IAYCTLKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLFQDTANLSDRLSERDPE-LLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRNNA 441
            LDN++AR YMD+R V+NQ ALI+SGTLGAKGHVQV++P  +ESY SQ+DP  ++  I YCTLKSFPS+++HCI W+RD  FE  F++KPS    F D  NL   +++   E  ++ +     ++ +    FSDC+   R  FE++F N A
Sbjct:  512 LDNVEARRYMDSRCVTNQKALIESGTLGAKGHVQVILPRMTESYTSQKDPNDSEGEIPYCTLKSFPSNIEHCIQWSRDK-FESIFKIKPSLANKFVDKNNLEILVTQLSEENQVEDLAKFCKIIRNYCFDFSDCIRLARVKFEKYFSNKA 660          
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Match: A0A2R2MK86_LINUN (ubiquitin-like modifier-activating enzyme 6 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MK86_LINUN)

HSP 1 Score: 141 bits (355), Expect = 4.580e-36
Identity = 70/149 (46.98%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    1 LDNLQARLYMDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETADIAYCTLKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLFQDTANLSDRL--SERDPELLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRNNA 441
            LDN++AR Y+D+R VSNQ AL++SGT+GAKGHVQV+VPH +ESY SQRDP   ++ YC LKSFP++++HCI WARD  FE  F  KP+ F  F  +   ++++  S  + E +   + V+ MV ++P  +  CV   R  FE+ F + A
Sbjct:  536 LDNVEARRYVDSRCVSNQRALLESGTMGAKGHVQVIVPHLTESYASQRDPVDEEVPYCMLKSFPATIEHCIQWARDK-FESQFTQKPNLFNKFWSSHKSAEQVIQSLNNGEAIDGAVQVSKMVLNRPRDWKHCVEIARVKFEKLFNHKA 683          
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Match: A0A2T7NFW2_POMCA (UBA_e1_C domain-containing protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NFW2_POMCA)

HSP 1 Score: 139 bits (350), Expect = 2.140e-35
Identity = 70/151 (46.36%), Postives = 100/151 (66.23%), Query Frame = 1
Query:    1 LDNLQARLYMDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETADIAYCTLKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLF----QDTANLSDRLSERDPELLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRNNA 441
            LDN++AR YMD+R V+ Q  L++SGT+G KGHVQV+VPH +ESY SQ+DP   D  YCT+KSFP+S++HCI WARD  FE  F ++P+ F  F     D  ++++RL  R  E+++  + V+ M   +P  + DCV   R  FE++F   A
Sbjct:  537 LDNVEARRYMDSRCVTTQRPLLESGTMGTKGHVQVIVPHLTESYTSQQDPVDEDFPYCTIKSFPASIEHCIQWARDK-FEQLFVIQPNLFNKFFSCHTDLTSVAERL--RSGEMVEGAIRVSKMAATRPRIWEDCVVLARIWFEKYFNLKA 684          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121934.4504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J1TXA5_OWEFU6.800e-3948.99Ofus.G073102 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI001458A4456.310e-3846.31ubiquitin-like modifier-activating enzyme 6 n=1 Ta... [more]
A0A210QVC5_MIZYE1.500e-3748.34Ubiquitin-like modifier-activating enzyme 6 n=4 Ta... [more]
L8HGS4_ACACA1.320e-3646.21Ubiquitinlike modifier-activating enzyme 1, putati... [more]
R7U3Z5_CAPTE2.440e-3648.32UBA_e1_C domain-containing protein n=1 Tax=Capitel... [more]
A0A3M7S9P4_BRAPC2.440e-3648.37Ubiquitin-like modifier-activating enzyme 6 n=1 Ta... [more]
A0A6J8BIU4_MYTCO3.100e-3647.02UBE1L2 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=... [more]
A0A813YH24_9BILA3.330e-3648.00Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A2R2MK86_LINUN4.580e-3646.98ubiquitin-like modifier-activating enzyme 6 n=1 Ta... [more]
A0A2T7NFW2_POMCA2.140e-3546.36UBA_e1_C domain-containing protein n=2 Tax=Pomacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121934contigM-pyrifera_M_contig121934:9..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score124.4
Seed ortholog evalue4.1e-26
Seed eggNOG ortholog10224.XP_002733723.2
Preferred nameuba6
KEGG koko:K10699
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin activating enzyme activity
EggNOG OGs38C42@33154,3BF55@33208,3CS9T@33213,COG0476@1,KOG2012@2759
EC6.2.1.45
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size441
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121934.4504.1prot_M-pyrifera_M_contig121934.4504.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121934 9..503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.2739797-CDS-M-pyrifera_M_contig121934:8..1461622815738.2739797-CDS-M-pyrifera_M_contig121934:8..146Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121934 9..146 -
1692277546.093197-CDS-M-pyrifera_M_contig121934:8..1461692277546.093197-CDS-M-pyrifera_M_contig121934:8..146Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121934 9..146 -
1622815738.2850509-CDS-M-pyrifera_M_contig121934:227..5031622815738.2850509-CDS-M-pyrifera_M_contig121934:227..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121934 228..503 -
1692277546.1025193-CDS-M-pyrifera_M_contig121934:227..5031692277546.1025193-CDS-M-pyrifera_M_contig121934:227..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121934 228..503 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.295372-UTR-M-pyrifera_M_contig121934:503..5301622815738.295372-UTR-M-pyrifera_M_contig121934:503..530Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121934 504..530 -
1692277546.1100743-UTR-M-pyrifera_M_contig121934:503..5301692277546.1100743-UTR-M-pyrifera_M_contig121934:503..530Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121934 504..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121934.4504.1

>prot_M-pyrifera_M_contig121934.4504.1 ID=prot_M-pyrifera_M_contig121934.4504.1|Name=mRNA_M-pyrifera_M_contig121934.4504.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MDARAVSNQLALIDSGTLGAKGHVQVVVPHKSESYGSQRDPETADIAYCT
LKSFPSSMDHCIVWARDLLFEDYFRVKPSDFQLFQDTANLSDRLSERDPE
LLKSVLSVAAMVEHKPIGFSDCVAFGRAMFEEFFRNNA
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mRNA from alignment at M-pyrifera_M_contig121934:9..530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121934.4504.1 ID=mRNA_M-pyrifera_M_contig121934.4504.1|Name=mRNA_M-pyrifera_M_contig121934.4504.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig121934:9..530- (Macrocystis pyrifera P11B4 male)
CTGGACAACCTGCAGGCGCGGCTGTACATGGATGCCCGGGCAGTGAGCAA CCAACTGGCGCTGATCGACTCTGGCACCTTGGGTGCCAAGGGCCACGTGC AGGTGGTGGTGCCGCACAAGTCCGAGTCCTACGGCAGCCAGCGTGACCCT GAGACTGCGGACATTGCGTATTGTACGCTGAAGAGCTTTCCTTCCTCCAT GGACCACTGCATTGTGTGGGCCCGGGATCTCCTCTTCGAGGACTACTTCC GCGTAAAGCCCTCCGATTTCCAGCTGTTCCAGGACACCGCCAACTTGAGC GATGTATGAATGACTCTCTCTCTCTCTCTCTTTATCTCTTCTCTTTTCTC TCTTTCTCTCCCGTGGATACTGACGTGTAATCAGAGACTCAGCGAGCGTG ATCCCGAGCTGCTCAAGAGTGTTCTTTCGGTGGCCGCGATGGTGGAGCAC AAGCCCATTGGTTTCAGTGACTGTGTGGCTTTTGGCCGTGCGATGTTCGA GGAGTTCTTCCGCAACAACGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121934:9..530-

>mRNA_M-pyrifera_M_contig121934.4504.1 ID=mRNA_M-pyrifera_M_contig121934.4504.1|Name=mRNA_M-pyrifera_M_contig121934.4504.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig121934:9..530- (Macrocystis pyrifera P11B4 male)
ATGGATGCCCGGGCAGTGAGCAACCAACTGGCGCTGATCGACTCTGGCAC
CTTGGGTGCCAAGGGCCACGTGCAGGTGGTGGTGCCGCACAAGTCCGAGT
CCTACGGCAGCCAGCGTGACCCTGAGACTGCGGACATTGCGTATTGTACG
CTGAAGAGCTTTCCTTCCTCCATGGACCACTGCATTGTGTGGGCCCGGGA
TCTCCTCTTCGAGGACTACTTCCGCGTAAAGCCCTCCGATTTCCAGCTGT
TCCAGGACACCGCCAACTTGAGCGATATGGATGCCCGGGCAGTGAGCAAC
CAACTGGCGCTGATCGACTCTGGCACCTTGGGTGCCAAGGGCCACGTGCA
GGTGGTGGTGCCGCACAAGTCCGAGTCCTACGGCAGCCAGCGTGACCCTG
AGACTGCGGACATTGCGTATTGTACGCTGAAGAGCTTTCCTTCCTCCATG
GACCACTGCATTGTGTGGGCCCGGGATCTCCTCTTCGAGGACTACTTCCG
CGTAAAGCCCTCCGATTTCCAGCTGTTCCAGGACACCGCCAACTTGAGCG
ATAGACTCAGCGAGCGTGATCCCGAGCTGCTCAAGAGTGTTCTTTCGGTG
GCCGCGATGGTGGAGCACAAGCCCATTGGTTTCAGTGACTGTGTGGCTTT
TGGCCGTGCGATGTTCGAGGAGTTCTTCCGCAACAACGCGAGACTCAGCG
AGCGTGATCCCGAGCTGCTCAAGAGTGTTCTTTCGGTGGCCGCGATGGTG
GAGCACAAGCCCATTGGTTTCAGTGACTGTGTGGCTTTTGGCCGTGCGAT
GTTCGAGGAGTTCTTCCGCAACAACGCG
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