mRNA_M-pyrifera_M_contig121861.4502.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121861.4502.1
Unique NamemRNA_M-pyrifera_M_contig121861.4502.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121861.4502.1 vs. uniprot
Match: F4PQI4_CAVFA (General transcription factor IIH subunit n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PQI4_CAVFA)

HSP 1 Score: 53.5 bits (127), Expect = 5.820e-7
Identity = 19/46 (41.30%), Postives = 28/46 (60.87%), Query Frame = 1 
Query:    1 CAGCNVAIPADLPRTLCPRCHWPFCTACDQIIHQTLHHCPGCSPAI 138
            C GC + I  +     CPRC   FC  CDQ++H+++H+CPGC   +
Sbjct:  365 CYGCLLPIKPNYLNYGCPRCKKIFCFDCDQVVHESIHNCPGCENGL 410
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BLAST of mRNA_M-pyrifera_M_contig121861.4502.1 vs. uniprot
Match: UPI000711B1D9 (transcription factor IIh subunit n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711B1D9)

HSP 1 Score: 47.8 bits (112), Expect = 6.390e-5
Identity = 17/42 (40.48%), Postives = 22/42 (52.38%), Query Frame = 1 
Query:    1 CAGCNVAIPADLPRTLCPRCHWPFCTACDQIIHQTLHHCPGC 126
            C GC            CP CH  FC  CD  +H++++HCPGC
Sbjct:  344 CYGCYSEFHEGDVCMQCPSCHNLFCETCDDFLHESIYHCPGC 385
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121861.4502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F4PQI4_CAVFA5.820e-741.30General transcription factor IIH subunit n=1 Tax=C... [more]
UPI000711B1D96.390e-540.48transcription factor IIh subunit n=1 Tax=Blastocys... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121861contigM-pyrifera_M_contig121861:98..244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog6183.Smp_136520.1
Preferred nameGTF2H2
KEGG koko:K03142,ko:K14766
KEGG Pathwayko03022,ko03420,ko05203,map03022,map03420,map05203
KEGG ModuleM00290
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000428,GO:0000438,GO:0000439,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0002029,GO:0002031,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016591,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022401,GO:0022607,GO:0023051,GO:0023057,GO:0023058,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031623,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036260,GO:0043043,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045744,GO:0046483,GO:0047485,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0098657,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.General transcription factor IIH
EggNOG OGs38CIQ@33154,3BB63@33208,3CUR6@33213,COG5151@1,KOG2807@2759
COG Functional cat.K
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03021,ko03400
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.1970956-CDS-M-pyrifera_M_contig121861:97..2441622815738.1970956-CDS-M-pyrifera_M_contig121861:97..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121861 98..244 +
1692277546.074303-CDS-M-pyrifera_M_contig121861:97..2441692277546.074303-CDS-M-pyrifera_M_contig121861:97..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121861 98..244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121861.4502.1prot_M-pyrifera_M_contig121861.4502.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121861 98..244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121861.4502.1

>prot_M-pyrifera_M_contig121861.4502.1 ID=prot_M-pyrifera_M_contig121861.4502.1|Name=mRNA_M-pyrifera_M_contig121861.4502.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
CAGCNVAIPADLPRTLCPRCHWPFCTACDQIIHQTLHHCPGCSPAIRQ*
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mRNA from alignment at M-pyrifera_M_contig121861:98..244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121861.4502.1 ID=mRNA_M-pyrifera_M_contig121861.4502.1|Name=mRNA_M-pyrifera_M_contig121861.4502.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig121861:98..244+ (Macrocystis pyrifera P11B4 male)
TGTGCCGGATGTAATGTTGCCATTCCTGCAGACCTTCCCAGGACACTCTG
CCCAAGATGTCATTGGCCATTTTGCACGGCATGCGACCAAATCATACACC
AAACTCTCCATCATTGCCCAGGATGCTCTCCAGCCATTCGACAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121861:98..244+

>mRNA_M-pyrifera_M_contig121861.4502.1 ID=mRNA_M-pyrifera_M_contig121861.4502.1|Name=mRNA_M-pyrifera_M_contig121861.4502.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig121861:98..244+ (Macrocystis pyrifera P11B4 male)
TGTGCCGGATGTAATGTTGCCATTCCTGCAGACCTTCCCAGGACACTCTG
CCCAAGATGTCATTGGCCATTTTGCACGGCATGCGACCAAATCATACACC
AAACTCTCCATCATTGCCCAGGATGCTCTCCAGCCATTCGACAGTAGTGT
GCCGGATGTAATGTTGCCATTCCTGCAGACCTTCCCAGGACACTCTGCCC
AAGATGTCATTGGCCATTTTGCACGGCATGCGACCAAATCATACACCAAA
CTCTCCATCATTGCCCAGGATGCTCTCCAGCCATTCGACAGTAG
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