mRNA_M-pyrifera_M_contig121851.4497.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121851.4497.1
Unique NamemRNA_M-pyrifera_M_contig121851.4497.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121851.4497.1 vs. uniprot
Match: A0A517PL31_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PL31_9PLAN)

HSP 1 Score: 333 bits (853), Expect = 2.520e-115
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 
Query:    1 MPAPEEPAENDRNDPIQAAIHAALRERFRSFLNDDARYRKFITACNDLYSKDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVEVPIYKGVWDISYIDEAERARSENAPYSPGILRGQRVLGQSYPHYILVLRRMPCLVESVSG 477
            MPAPEEPAENDRNDPIQAAIHAALRERFRSFLNDDARYRKFITACNDLYSKDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVEVPIYKGVWDISYIDEAERARSENAPYSPGILRGQRVLGQSYPHYILVLRRMPCLVESVSG
Sbjct:    1 MPAPEEPAENDRNDPIQAAIHAALRERFRSFLNDDARYRKFITACNDLYSKDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVEVPIYKGVWDISYIDEAERARSENAPYSPGILRGQRVLGQSYPHYILVLRRMPCLVESVSG 159
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BLAST of mRNA_M-pyrifera_M_contig121851.4497.1 vs. uniprot
Match: A0A2E7KAV1_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KAV1_9PLAN)

HSP 1 Score: 262 bits (669), Expect = 1.040e-87
Identity = 122/127 (96.06%), Postives = 125/127 (98.43%), Query Frame = 1 
Query:    1 MPAPEEPAENDRNDPIQAAIHAALRERFRSFLNDDARYRKFITACNDLYSKDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVEVPIYKGVWDISYIDEAERARSENAPYSP 381
            MPAPEEP ENDRNDP+QA IHAALRE+FRSFLNDDARYRKFITACNDLYSKDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVE+PIYKGVWDISYIDEAERARSENAPYSP
Sbjct:    1 MPAPEEPVENDRNDPMQAEIHAALREQFRSFLNDDARYRKFITACNDLYSKDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVEIPIYKGVWDISYIDEAERARSENAPYSP 127
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BLAST of mRNA_M-pyrifera_M_contig121851.4497.1 vs. uniprot
Match: A0A517WA61_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WA61_9PLAN)

HSP 1 Score: 214 bits (544), Expect = 1.140e-68
Identity = 101/126 (80.16%), Postives = 110/126 (87.30%), Query Frame = 1 
Query:    1 MPAPEEPAENDRNDPIQAAIHAALRERFRSFLNDDARYRKFITACNDLYSKDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVEVPIYKGVWDISYIDEAERARSENAPYS 378
            MPAPEEP EN+RNDP+QA IHAALRERFRSFLNDDAR+RKFI ACN+ +   RELRYWQQ  WD+FIKEYPEYA+L  PAIR+AFHVCHVHL PLKQVEVPI+KGV DI Y  EAERARSENAPYS
Sbjct:    1 MPAPEEPVENNRNDPMQAEIHAALRERFRSFLNDDARFRKFIRACNEFFYTSRELRYWQQQEWDIFIKEYPEYATLSVPAIRDAFHVCHVHLDPLKQVEVPIHKGVRDIYYAPEAERARSENAPYS 126
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BLAST of mRNA_M-pyrifera_M_contig121851.4497.1 vs. uniprot
Match: A0A518FLN5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FLN5_9PLAN)

HSP 1 Score: 148 bits (373), Expect = 1.210e-42
Identity = 75/125 (60.00%), Postives = 85/125 (68.00%), Query Frame = 1 
Query:    4 PAPEEPAENDRNDPIQAAIHAALRERFRSFLNDDARYRKFITACNDLYSKDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVEVPIYKGVWDISYIDEAERARSENAPYS 378
            P   E AE   +DP+Q AI A LRERFR FLNDD RYRKFI  CN+ ++  + L YWQQ  W  FIKE PEYASL  PAIRNAFHVCHVHL PLKQV++PI K     +    A +A  ENAPYS
Sbjct:    5 PTRNEAAETVPSDPVQVAIQAELRERFRVFLNDDTRYRKFIKVCNEPHAPHKGLSYWQQQEWAPFIKENPEYASLATPAIRNAFHVCHVHLTPLKQVQIPIQKEEGYSTNHSTAAKAIEENAPYS 129
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BLAST of mRNA_M-pyrifera_M_contig121851.4497.1 vs. uniprot
Match: UPI001E591E8B (hypothetical protein n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E591E8B)

HSP 1 Score: 90.5 bits (223), Expect = 5.390e-20
Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:   37 NDPIQAAIHAALRERFRSFLNDDARYRKFITACNDLYSKDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVEVPIYKGVWDISYIDEAERARSENAPYS 378
            NDP  AA   ++RE FR FL +D  +RKFI  CN    +   L Y Q+  W+ F    PE+ SL    +  AFHVCH+HL PL+ VEVPI K V  +S   E+E   S+ A Y+
Sbjct:    2 NDP--AANWQSIRELFRVFLGNDVAFRKFIQTCNTKSRESGRLTYAQEERWNSFTNANPEFKSLTFEEVVAAFHVCHIHLKPLRSVEVPIRKDVVSVSRTRESEAQISQAAFYA 113
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BLAST of mRNA_M-pyrifera_M_contig121851.4497.1 vs. uniprot
Match: A0A517M0U2_9BACT (Uncharacterized protein n=1 Tax=Rosistilla ulvae TaxID=1930277 RepID=A0A517M0U2_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 7.290e-10
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   70 LRERFRSFLNDDARYRKFITACNDLYSKDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVEVPI 306
            L  +FRSF++DDA+Y +F+ AC    S    LR+WQ+ +W  F+ E P +  +    I + F+ C +H  PL ++ V I
Sbjct:    6 LHVQFRSFVDDDAKYERFVHACIRSRSGRGRLRHWQELLWSNFVDEVPGFTGMPVDDILDHFYFCPLHQNPLTEMAVHI 84
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121851.4497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A517PL31_9PLAN2.520e-115100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A2E7KAV1_9PLAN1.040e-8796.06Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517WA61_9PLAN1.140e-6880.16Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A518FLN5_9PLAN1.210e-4260.00Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
UPI001E591E8B5.390e-2043.86hypothetical protein n=1 Tax=unclassified Blastopi... [more]
A0A517M0U2_9BACT7.290e-1036.71Uncharacterized protein n=1 Tax=Rosistilla ulvae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121851contigM-pyrifera_M_contig121851:10..486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size478
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.009104-CDS-M-pyrifera_M_contig121851:9..4861622815738.009104-CDS-M-pyrifera_M_contig121851:9..486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121851 10..486 +
1692277546.011995-CDS-M-pyrifera_M_contig121851:9..4861692277546.011995-CDS-M-pyrifera_M_contig121851:9..486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121851 10..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121851.4497.1prot_M-pyrifera_M_contig121851.4497.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121851 10..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121851.4497.1

>prot_M-pyrifera_M_contig121851.4497.1 ID=prot_M-pyrifera_M_contig121851.4497.1|Name=mRNA_M-pyrifera_M_contig121851.4497.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
MPAPEEPAENDRNDPIQAAIHAALRERFRSFLNDDARYRKFITACNDLYS
KDRELRYWQQPVWDLFIKEYPEYASLDAPAIRNAFHVCHVHLIPLKQVEV
PIYKGVWDISYIDEAERARSENAPYSPGILRGQRVLGQSYPHYILVLRRM
PCLVESVSG
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mRNA from alignment at M-pyrifera_M_contig121851:10..486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121851.4497.1 ID=mRNA_M-pyrifera_M_contig121851.4497.1|Name=mRNA_M-pyrifera_M_contig121851.4497.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig121851:10..486+ (Macrocystis pyrifera P11B4 male)
ATGCCAGCCCCCGAAGAACCGGCTGAAAACGACAGGAACGATCCCATCCA
GGCTGCAATCCATGCTGCGCTCCGTGAACGGTTCCGGTCGTTCCTCAATG
ACGACGCCCGGTATCGCAAGTTCATCACAGCCTGCAATGACCTGTACTCA
AAGGACAGAGAGCTCAGATACTGGCAGCAACCGGTCTGGGATCTTTTCAT
CAAAGAGTATCCCGAATACGCGTCCCTTGATGCGCCGGCAATCCGTAACG
CGTTTCATGTTTGTCACGTGCACCTGATTCCCTTAAAACAGGTCGAGGTT
CCCATTTATAAAGGAGTCTGGGACATCAGTTACATTGACGAAGCCGAGCG
AGCCAGATCTGAAAACGCCCCCTACTCCCCAGGAATTCTCCGTGGACAGC
GAGTACTGGGGCAATCGTACCCACATTACATCCTCGTGTTGCGACGAATG
CCTTGCCTGGTGGAAAGCGTATCGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121851:10..486+

>mRNA_M-pyrifera_M_contig121851.4497.1 ID=mRNA_M-pyrifera_M_contig121851.4497.1|Name=mRNA_M-pyrifera_M_contig121851.4497.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig121851:10..486+ (Macrocystis pyrifera P11B4 male)
ATGCCAGCCCCCGAAGAACCGGCTGAAAACGACAGGAACGATCCCATCCA
GGCTGCAATCCATGCTGCGCTCCGTGAACGGTTCCGGTCGTTCCTCAATG
ACGACGCCCGGTATCGCAAGTTCATCACAGCCTGCAATGACCTGTACTCA
AAGGACAGAGAGCTCAGATACTGGCAGCAACCGGTCTGGGATCTTTTCAT
CAAAGAGTATCCCGAATACGCGTCCCTTGATGCGCCGGCAATCCGTAACG
CGTTTCATGTTTGTCACGTGCACCTGATTCCCTTAAAACAGGTCGAGGTT
CCCATTTATAAAGGAGTCTGGGACATCAGTTACATTGACGAAGCCGAGCG
AGCCAGATCTGAAAACGCCCCCTACTCCCCAGGAATTCTCCGTGGACAGC
GAGTACTGGGGCAATCGTACCCACATTACATCCTCGTGTTGCGACGAATG
CCTTGCCTGGTGGAAAGCGTATCGGGGATGCCAGCCCCCGAAGAACCGGC
TGAAAACGACAGGAACGATCCCATCCAGGCTGCAATCCATGCTGCGCTCC
GTGAACGGTTCCGGTCGTTCCTCAATGACGACGCCCGGTATCGCAAGTTC
ATCACAGCCTGCAATGACCTGTACTCAAAGGACAGAGAGCTCAGATACTG
GCAGCAACCGGTCTGGGATCTTTTCATCAAAGAGTATCCCGAATACGCGT
CCCTTGATGCGCCGGCAATCCGTAACGCGTTTCATGTTTGTCACGTGCAC
CTGATTCCCTTAAAACAGGTCGAGGTTCCCATTTATAAAGGAGTCTGGGA
CATCAGTTACATTGACGAAGCCGAGCGAGCCAGATCTGAAAACGCCCCCT
ACTCCCCAGGAATTCTCCGTGGACAGCGAGTACTGGGGCAATCGTACCCA
CATTACATCCTCGTGTTGCGACGAATGCCTTGCCTGGTGGAAAGCGTATC
GGGG
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