mRNA_M-pyrifera_M_contig121817.4488.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121817.4488.1
Unique NamemRNA_M-pyrifera_M_contig121817.4488.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Match: Q9M512_BRANA (DNA mismatch repair protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=Q9M512_BRANA)

HSP 1 Score: 105 bits (262), Expect = 4.050e-25
Identity = 64/142 (45.07%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    1 KLTPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAKENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKK-ASGKAGLFAREIAGIYSRGTL-VADSIVGKIERNEG-GGRSVGILSGVD 417
            K TPLE  V  L+R++P VI  VE GYRY   G  A +A+ VLGI  YA  +  F T S+P  R+ +H + LV  GY++GVV+QTETAA+K   + +AG F R ++G+Y++ TL  A+ I G     EG GG+S  ++  VD
Sbjct:   65 KYTPLEQQVVELKRKHPDVILMVEVGYRYRFFGEDAEIAARVLGI--YAHMDHSFMTASVPTFRLNVHVRGLVNAGYKVGVVKQTETAAIKSHGANRAGPFFRGLSGLYTKATLEAAEDISGGCVGEEGFGGQSNFLVCVVD 204          
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Match: UPI001E676E4C (DNA mismatch repair protein Msh3-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E676E4C)

HSP 1 Score: 109 bits (272), Expect = 5.660e-25
Identity = 62/134 (46.27%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 KLTPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAKENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKKA-SGKAGLFAREIAGIYSRGTLVADSIVGKIERNEGGGRSVG 399
            KLTPLE  V S++ E P V+ FVE GY+Y   G  A +A+  L IVA+   +  F T SIP  R+ +H +RLV  GY++GVV+QTETAA+K A S K   F RE+A +Y+R TL+ + +        GGG +VG
Sbjct:  175 KLTPLEQQVVSIKNEQPDVVLFVECGYKYRFFGNDAEIAAKELNIVAHLDHS--FMTASIPTHRLHVHVRRLVAKGYKVGVVKQTETAALKAAGSNKTAPFGRELAALYTRSTLIGEDVT-----PAGGGEAVG 301          
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Match: A0A7S0PSI8_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PSI8_MICPS)

HSP 1 Score: 107 bits (268), Expect = 8.280e-25
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 KLTPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAKENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKKAS----GKAGLFAREIAGIYSRGTLVA 345
            KLTPLE  V   + ++PGV+  +E GY++  +G  A +AS VL I AY  ++  + T S+PV R+ I+ +RLV+ G+++GV+RQTETAA+K A     GK+G+F R + G+Y+R TL A
Sbjct:  206 KLTPLEEQVKKCKADHPGVLLLIEVGYKFHFYGEDAEIASKVLNIFAYHPKDRLYLTASVPVPRLHIYVRRLVDAGHKVGVIRQTETAALKAAGETEGGKSGVFERRLVGLYTRSTLEA 324          
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Match: A0A6P5TVC9_PRUAV (DNA mismatch repair protein MSH3-like n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5TVC9_PRUAV)

HSP 1 Score: 107 bits (268), Expect = 1.000e-24
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 KLTPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAKENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKK-ASGKAGLFAREIAGIYSRGTLVADSIVGKIERNEGG 384
            K TPLE  V  L++ YP V+  VE GY+Y   G  A +A+ VLGI A+   N  F T S+P  R+ +H +RLV  GY++GVV+QTETAA+K   S ++G F R ++ +Y++ TL A   VG  E   GG
Sbjct:  123 KFTPLEQQVVDLKKRYPDVLLMVEVGYKYRFFGQDAEIAARVLGIYAHMDHN--FLTASVPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNRSGPFGRGLSALYTKATLEAAEDVGGKEEGCGG 249          
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Match: D8REY9_SELML (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=10 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8REY9_SELML)

HSP 1 Score: 108 bits (270), Expect = 1.030e-24
Identity = 56/125 (44.80%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    7 TPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAKENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKK-ASGKAGLFAREIAGIYSRGTLVADSIVGKIERNE 378
            TPLE  +  L++++P V+  VE GY++   G  A  A++VLGIVAY   N  F T S+P  R+ +H +RLVE GY++GVV+QTETAA+K   + KAG F+R+++ +Y++ TL A   +G  E  E
Sbjct:    1 TPLEQQIVELKKKFPDVLLMVEVGYKFRFFGEDAEKAANVLGIVAYYSHN--FLTASVPTFRLHVHVRRLVEAGYKVGVVKQTETAAIKAHGTNKAGPFSRDLSALYTKATLEAGEFLGGEESGE 123          
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Match: A0A7R9XU05_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9XU05_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 1.250e-24
Identity = 62/141 (43.97%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    1 KLTPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAKENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKKASG----KAGLFAREIAGIYSRGTLVADSIVGKI-ERNEGGGRSVGILS 408
            K+TPLE  V + + +YPG +  +E GY+Y  +G  A  AS VLGI AY   N  + T S+PV R+ ++ +RLV+ GYR+GVV+QTETAA+K ASG    K+GLF R++ G+Y++ TL A + +    +  E    + G+LS
Sbjct:  105 KMTPLEQSVKTFKAKYPGTMLMIEVGYKYHFYGDDARDASKVLGIFAYQSRN--YLTASVPVVRLNVYVRRLVKAGYRVGVVKQTETAALK-ASGETGNKSGLFERKLVGLYTKATLDAGAALSDAGDDGEKSSMASGVLS 242          
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Match: M4DRL3_BRARP (DNA_MISMATCH_REPAIR_2 domain-containing protein n=10 Tax=Brassiceae TaxID=981071 RepID=M4DRL3_BRARP)

HSP 1 Score: 108 bits (269), Expect = 1.440e-24
Identity = 65/142 (45.77%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    1 KLTPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAKENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKK-ASGKAGLFAREIAGIYSRGTL-VADSIVGKIERNEG-GGRSVGILSGVD 417
            K TPLE  V  L+R++P VI  VE GYRY   G  A +A+ VLGI  YA  +  F T S+P  R+ +H +RLV  GY++GVV+QTETAA+K   + +AG F R ++G+Y++ TL  A+ I G     EG GG+S  ++  VD
Sbjct:   99 KYTPLEQQVVELKRKHPDVILMVEVGYRYRFFGEDAEIAARVLGI--YAHMDHSFMTASVPTFRLNVHVRRLVNAGYKVGVVKQTETAAIKSHGANRAGPFFRGLSGLYTKATLEAAEDISGGCVGEEGFGGQSNFLVCVVD 238          
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Match: R7Q2I1_CHOCR (DNA mismatch repair protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2I1_CHOCR)

HSP 1 Score: 108 bits (269), Expect = 1.450e-24
Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    7 TPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAKENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKKASGKA-GLFAREIAGIYSRGTLVADSIVGK 363
            TPLE     L++++P ++  +E GY+Y L    A +AS  L I AY   N  F T S P  R+  H  RLV+ GY++GVV Q+ETAA+KKAS K+ GLF R++  +Y+RGT++AD  +G+
Sbjct:  295 TPLESQYVKLRKQHPDMLLVIECGYKYRLFDNDATIASKTLRIAAYFDRN--FLTASFPTHRLSYHVNRLVQAGYKVGVVNQSETAALKKASSKSSGLFQRKLEAVYTRGTMIADGTLGQ 412          
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Match: A0A7S0S884_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S884_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 1.540e-24
Identity = 60/133 (45.11%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 KLTPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAKENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKKAS----GKAGLFAREIAGIYSRGTLVADSIVGKIERNEGGG 387
            K+TPLE  V   +  +PGV+  +E GY++  +G  A VAS VL I AY   N  + T S+PV R+ ++ +RLVE GY++GV+RQTETAA+K +     GK+GLF R + G+Y+R TL A   +      EGGG
Sbjct:  247 KMTPLEEQVKKHKAAHPGVLLLIEVGYKFHFYGEDANVASKVLNIFAYKSRN--YLTASVPVMRLHVYVRRLVEAGYKVGVIRQTETAALKASGETDGGKSGLFERRLVGLYTRSTLEAGVAIA-----EGGG 372          
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Match: A0A0V0HD09_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HD09_SOLCH)

HSP 1 Score: 103 bits (258), Expect = 1.550e-24
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 KLTPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAKENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKK-ASGKAGLFAREIAGIYSRGTLVADSIVG 360
            K TPLE  V  L+ +YP V+  +E GYRY   G  A  A+ VLGI A+   N  F T S+P  R+ IH +RLV  GY++GVV+QTETAA+K   S K G F+R ++ +Y++ TL A   VG
Sbjct:  121 KYTPLEQQVVELKTKYPDVLLMIEVGYRYRFFGQDAENAARVLGIYAHMDHN--FLTASVPTFRLNIHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFSRGLSALYTKATLEAAEDVG 239          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121817.4488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9M512_BRANA4.050e-2545.07DNA mismatch repair protein (Fragment) n=1 Tax=Bra... [more]
UPI001E676E4C5.660e-2546.27DNA mismatch repair protein Msh3-like n=1 Tax=Proc... [more]
A0A7S0PSI8_MICPS8.280e-2545.38Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
A0A6P5TVC9_PRUAV1.000e-2444.96DNA mismatch repair protein MSH3-like n=1 Tax=Prun... [more]
D8REY9_SELML1.030e-2444.80DNA_MISMATCH_REPAIR_2 domain-containing protein (F... [more]
A0A7R9XU05_9CHLO1.250e-2443.97Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
M4DRL3_BRARP1.440e-2445.77DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
R7Q2I1_CHOCR1.450e-2445.00DNA mismatch repair protein n=1 Tax=Chondrus crisp... [more]
A0A7S0S884_9CHLO1.540e-2445.11Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A0V0HD09_SOLCH1.550e-2447.11Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121817contigM-pyrifera_M_contig121817:56..481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score107.5
Seed ortholog evalue5.4e-21
Seed eggNOG ortholog88036.EFJ29021
Preferred nameMSH3
KEGG koko:K08736
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
Hectar predicted targeting categoryother localisation
GOsGO:0000217,GO:0000404,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032135,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0043570,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.DNA mismatch repair
EggNOG OGs37PDJ@33090,3GC5Z@35493,COG0249@1,KOG0218@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.6489604-CDS-M-pyrifera_M_contig121817:55..4811622815737.6489604-CDS-M-pyrifera_M_contig121817:55..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121817 56..481 +
1692277545.8789988-CDS-M-pyrifera_M_contig121817:55..4811692277545.8789988-CDS-M-pyrifera_M_contig121817:55..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121817 56..481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121817.4488.1prot_M-pyrifera_M_contig121817.4488.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121817 56..481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121817.4488.1

>prot_M-pyrifera_M_contig121817.4488.1 ID=prot_M-pyrifera_M_contig121817.4488.1|Name=mRNA_M-pyrifera_M_contig121817.4488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
KLTPLEGFVFSLQREYPGVIWFVESGYRYTLHGLSACVASHVLGIVAYAK
ENAPFATGSIPVGRIGIHTQRLVECGYRIGVVRQTETAAVKKASGKAGLF
AREIAGIYSRGTLVADSIVGKIERNEGGGRSVGILSGVDGEG
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mRNA from alignment at M-pyrifera_M_contig121817:56..481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121817.4488.1 ID=mRNA_M-pyrifera_M_contig121817.4488.1|Name=mRNA_M-pyrifera_M_contig121817.4488.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig121817:56..481+ (Macrocystis pyrifera P11B4 male)
AAGTTGACGCCTTTGGAAGGGTTTGTGTTTTCGCTGCAACGAGAATATCC TGGAGTGATTTGGTTTGTGGAATCTGGATATCGATATACGTTGCATGGGT TGAGCGCATGTGTTGCATCTCATGTGCTTGGGATTGTTGCGTACGCGAAA GAGAATGCTCCATTTGCAACTGGGTCCATCCCTGTTGGTAGAATTGGCAT CCACACGCAACGACTGGTAGAATGTGGGTATCGGATTGGAGTGGTGCGGC AAACGGAAACTGCAGCGGTGAAGAAAGCCTCTGGAAAAGCAGGATTGTTT GCTCGCGAGATTGCTGGCATTTATTCTCGTGGCACACTTGTTGCTGACTC CATTGTTGGCAAGATTGAACGCAACGAAGGTGGAGGACGCAGTGTTGGGA TTCTGAGTGGTGTGGATGGAGAGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121817:56..481+

>mRNA_M-pyrifera_M_contig121817.4488.1 ID=mRNA_M-pyrifera_M_contig121817.4488.1|Name=mRNA_M-pyrifera_M_contig121817.4488.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig121817:56..481+ (Macrocystis pyrifera P11B4 male)
AAGTTGACGCCTTTGGAAGGGTTTGTGTTTTCGCTGCAACGAGAATATCC
TGGAGTGATTTGGTTTGTGGAATCTGGATATCGATATACGTTGCATGGGT
TGAGCGCATGTGTTGCATCTCATGTGCTTGGGATTGTTGCGTACGCGAAA
GAGAATGCTCCATTTGCAACTGGGTCCATCCCTGTTGGTAGAATTGGCAT
CCACACGCAACGACTGGTAGAATGTGGGTATCGGATTGGAGTGGTGCGGC
AAACGGAAACTGCAGCGGTGAAGAAAGCCTCTGGAAAAGCAGGATTGTTT
GCTCGCGAGATTGCTGGCATTTATTCTCGTGGCACACTTGTTGCTGACTC
CATTGTTGGCAAGATTGAACGCAACGAAGGTGGAGGACGCAGTGTTGGGA
TTCTGAGTGGTGTGGATGGAGAGGGAAAGTTGACGCCTTTGGAAGGGTTT
GTGTTTTCGCTGCAACGAGAATATCCTGGAGTGATTTGGTTTGTGGAATC
TGGATATCGATATACGTTGCATGGGTTGAGCGCATGTGTTGCATCTCATG
TGCTTGGGATTGTTGCGTACGCGAAAGAGAATGCTCCATTTGCAACTGGG
TCCATCCCTGTTGGTAGAATTGGCATCCACACGCAACGACTGGTAGAATG
TGGGTATCGGATTGGAGTGGTGCGGCAAACGGAAACTGCAGCGGTGAAGA
AAGCCTCTGGAAAAGCAGGATTGTTTGCTCGCGAGATTGCTGGCATTTAT
TCTCGTGGCACACTTGTTGCTGACTCCATTGTTGGCAAGATTGAACGCAA
CGAAGGTGGAGGACGCAGTGTTGGGATTCTGAGTGGTGTGGATGGAGAGG
GA
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