mRNA_M-pyrifera_M_contig121805.4486.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121805.4486.1
Unique NamemRNA_M-pyrifera_M_contig121805.4486.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Match: A0A4P9XCE2_9FUNG (Arginyltransferase (Fragment) n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9XCE2_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 3.390e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  112 MVPGVFAEDSYALYRRYQMAVHGDSAEDASREQYRRFLCDSPLVPV 249
            +VP  FAED+YALYR YQ+ VHGD  +  +REQYR+FL DSPLVP+
Sbjct:  147 LVPTAFAEDAYALYRSYQIGVHGDDPDRITREQYRQFLVDSPLVPL 192
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BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Match: A0A8J4GR31_9CHLO (Arginyltransferase n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GR31_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 5.380e-10
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   97 RLILRMVPGVFAEDSYALYRRYQMAVHGDSAEDASREQYRRFLCDSPLVPVG 252
            RL +RMVP  F ++ + LY+RYQMA HGD A D + E Y RFL  SPL+ VG
Sbjct:  441 RLQIRMVPSQFVQEEFELYKRYQMAQHGDEASDLNTESYIRFLVRSPLLYVG 492
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BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Match: A0A1Y1U784_9TREE (Arginyltransferase n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1U784_9TREE)

HSP 1 Score: 62.4 bits (150), Expect = 1.640e-9
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   88 GGVRLILRMVPGVFAEDSYALYRRYQMAVHGDSAEDASREQYRRFLCDSPLVP 246
            G  RL  R++P   + +++ALY++YQ+AVH D  E  S   +RRFLCDSPL+P
Sbjct:   68 GAHRLETRLIPAKASRETFALYKKYQVAVHHDRPESVSMNGFRRFLCDSPLIP 120
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BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Match: D8TR13_VOLCA (ATE_C domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TR13_VOLCA)

HSP 1 Score: 61.2 bits (147), Expect = 4.770e-9
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   97 RLILRMVPGVFAEDSYALYRRYQMAVHGDSAEDASREQYRRFLCDSPLVPVG 252
            RL +RMVP  F ++ + LY++YQMA HGD     SR  Y RFL DSPL  VG
Sbjct:  388 RLQIRMVPSRFLDEEFELYKKYQMAQHGDEPYQLSRASYTRFLVDSPLPHVG 439
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BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Match: B9HHM8_POPTR (Arginyl-tRNA--protein transferase n=3 Tax=Populus trichocarpa TaxID=3694 RepID=B9HHM8_POPTR)

HSP 1 Score: 58.9 bits (141), Expect = 3.060e-8
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   97 RLILRMVPGVFAEDSYALYRRYQMAVHGDSAEDASREQYRRFLCDSPLVPV 249
            RL +R+    F  + +ALYRRYQ+ VH D+ +D S   YR+FL D+PLVPV
Sbjct:  321 RLEIRLKRSSFDPEEFALYRRYQINVHNDTPDDVSESLYRKFLVDTPLVPV 371
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BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Match: A0A0G4IY72_PLABS (Arginyl-tRNA--protein transferase 1 n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IY72_PLABS)

HSP 1 Score: 58.5 bits (140), Expect = 4.180e-8
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   94 VRLILRMVPGVFAEDSYALYRRYQMAVHGDSAEDASREQYRRFLCDSPLVPVG 252
            VR    +V   F E+++ +Y+RYQ+AVHGD     +REQY+ FLCD+PLV   
Sbjct:  267 VRYTTTVVGSRFREEAFLVYQRYQVAVHGDPIARVTREQYKNFLCDTPLVETA 319
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BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Match: I2CRM0_NANGC (Arginine-trna-protein transferase 1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRM0_NANGC)

HSP 1 Score: 56.6 bits (135), Expect = 4.190e-8
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  115 VPGVFAEDSYALYRRYQMAVHGDSAEDASREQYRRFLCDSPLVP 246
            VP    E+ +ALY++YQ+AVHGD  ED ++E ++RFL  SPLVP
Sbjct:   43 VPPRVTEEVFALYKKYQVAVHGDRPEDVTKEGFKRFLVHSPLVP 86
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BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Match: A0A2K1YWL5_POPTR (Arginyl-tRNA--protein transferase n=4 Tax=Populus TaxID=3689 RepID=A0A2K1YWL5_POPTR)

HSP 1 Score: 57.4 bits (137), Expect = 1.080e-7
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   94 VRLILRMVPGVFAEDSYALYRRYQMAVHGDSAEDASREQYRRFLCDSPLVPV 249
            +RL +R+    F  + +ALYRRYQ+ VH D+ +  S   YRRFL D+PLVPV
Sbjct:  324 LRLEIRLKRSSFDPEEFALYRRYQINVHNDTLDLVSESSYRRFLVDTPLVPV 375
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BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Match: A0A5N5L9G3_9ROSI (Arginyl-tRNA--protein transferase n=4 Tax=Salix TaxID=40685 RepID=A0A5N5L9G3_9ROSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.470e-7
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   97 RLILRMVPGVFAEDSYALYRRYQMAVHGDSAEDASREQYRRFLCDSPLVPV 249
            RL +R+    F  + +ALYRRYQ+ VH D+ +  S   YRRFL D+PLVPV
Sbjct:  325 RLEIRLKRSGFDPEEFALYRRYQIKVHNDAPDHVSEISYRRFLVDTPLVPV 375
[Close]
BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Match: A0A512UDQ1_9ASCO (Arginyltransferase n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UDQ1_9ASCO)

HSP 1 Score: 56.6 bits (135), Expect = 2.000e-7
Identity = 21/49 (42.86%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   97 RLILRMVPGVFAEDSYALYRRYQMAVHGDSAEDASREQYRRFLCDSPLV 243
            R   R  P  F+E+ +ALY++YQ++VHGDS E  ++  ++ FLCD+P +
Sbjct:  173 RFHTRFEPAKFSEEKFALYKKYQISVHGDSPEKVTKSSFKNFLCDTPFL 221
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121805.4486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P9XCE2_9FUNG3.390e-1265.22Arginyltransferase (Fragment) n=2 Tax=Caulochytriu... [more]
A0A8J4GR31_9CHLO5.380e-1055.77Arginyltransferase n=2 Tax=Volvox reticuliferus Ta... [more]
A0A1Y1U784_9TREE1.640e-949.06Arginyltransferase n=1 Tax=Kockovaella imperatae T... [more]
D8TR13_VOLCA4.770e-953.85ATE_C domain-containing protein n=1 Tax=Volvox car... [more]
B9HHM8_POPTR3.060e-850.98Arginyl-tRNA--protein transferase n=3 Tax=Populus ... [more]
A0A0G4IY72_PLABS4.180e-847.17Arginyl-tRNA--protein transferase 1 n=2 Tax=Plasmo... [more]
I2CRM0_NANGC4.190e-854.55Arginine-trna-protein transferase 1 (Fragment) n=1... [more]
A0A2K1YWL5_POPTR1.080e-750.00Arginyl-tRNA--protein transferase n=4 Tax=Populus ... [more]
A0A5N5L9G3_9ROSI1.470e-750.98Arginyl-tRNA--protein transferase n=4 Tax=Salix Ta... [more]
A0A512UDQ1_9ASCO2.000e-742.86Arginyltransferase n=1 Tax=Metschnikowia sp. JCM 3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121805contigM-pyrifera_M_contig121805:209..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog3067.XP_002948740.1
KEGG rclassRC00055,RC00064
KEGG koko:K00685
KEGG ReactionR03862
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009894,GO:0009987,GO:0010029,GO:0010033,GO:0010150,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019216,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0032501,GO:0032502,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0048366,GO:0048367,GO:0048580,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0050994,GO:0051239,GO:0051603,GO:0051704,GO:0051707,GO:0065007,GO:0071704,GO:0080090,GO:0090693,GO:0097305,GO:0098542,GO:0099402,GO:0140096,GO:1900140,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:2000026
EggNOG free text desc.Arginine-tRNA-protein transferase, C terminus
EggNOG OGs34I1G@3041,37PUQ@33090,COG2935@1,KOG1193@2759
EC2.3.2.8
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.5523858-CDS-M-pyrifera_M_contig121805:208..4601622815737.5523858-CDS-M-pyrifera_M_contig121805:208..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121805 209..460 -
1692277545.835672-CDS-M-pyrifera_M_contig121805:208..4601692277545.835672-CDS-M-pyrifera_M_contig121805:208..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121805 209..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121805.4486.1prot_M-pyrifera_M_contig121805.4486.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121805 209..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121805.4486.1

>prot_M-pyrifera_M_contig121805.4486.1 ID=prot_M-pyrifera_M_contig121805.4486.1|Name=mRNA_M-pyrifera_M_contig121805.4486.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
SSSSASSSSSSSSSSSPSPSPSSPSSSSSGGVRLILRMVPGVFAEDSYAL
YRRYQMAVHGDSAEDASREQYRRFLCDSPLVPVG
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mRNA from alignment at M-pyrifera_M_contig121805:209..460-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121805.4486.1 ID=mRNA_M-pyrifera_M_contig121805.4486.1|Name=mRNA_M-pyrifera_M_contig121805.4486.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig121805:209..460- (Macrocystis pyrifera P11B4 male)
TCTTCATCTTCTGCTTCTTCTTCATCTTCTTCATCTTCTTCATCTTCACC
TTCACCATCACCTTCCTCCCCCTCCTCCTCCTCTTCCGGTGGGGTTCGGT
TGATTTTGCGGATGGTTCCGGGTGTGTTTGCGGAGGACAGCTATGCGCTG
TATCGCCGGTACCAGATGGCGGTGCATGGGGATTCTGCGGAGGATGCGAG
TCGAGAGCAGTACCGGCGCTTTTTGTGCGATTCTCCTCTTGTGCCTGTGG
GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121805:209..460-

>mRNA_M-pyrifera_M_contig121805.4486.1 ID=mRNA_M-pyrifera_M_contig121805.4486.1|Name=mRNA_M-pyrifera_M_contig121805.4486.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig121805:209..460- (Macrocystis pyrifera P11B4 male)
TCTTCATCTTCTGCTTCTTCTTCATCTTCTTCATCTTCTTCATCTTCACC
TTCACCATCACCTTCCTCCCCCTCCTCCTCCTCTTCCGGTGGGGTTCGGT
TGATTTTGCGGATGGTTCCGGGTGTGTTTGCGGAGGACAGCTATGCGCTG
TATCGCCGGTACCAGATGGCGGTGCATGGGGATTCTGCGGAGGATGCGAG
TCGAGAGCAGTACCGGCGCTTTTTGTGCGATTCTCCTCTTGTGCCTGTGG
GATCTTCATCTTCTGCTTCTTCTTCATCTTCTTCATCTTCTTCATCTTCA
CCTTCACCATCACCTTCCTCCCCCTCCTCCTCCTCTTCCGGTGGGGTTCG
GTTGATTTTGCGGATGGTTCCGGGTGTGTTTGCGGAGGACAGCTATGCGC
TGTATCGCCGGTACCAGATGGCGGTGCATGGGGATTCTGCGGAGGATGCG
AGTCGAGAGCAGTACCGGCGCTTTTTGTGCGATTCTCCTCTTGTGCCTGT
GGGA
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