mRNA_M-pyrifera_M_contig121793.4482.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121793.4482.1
Unique NamemRNA_M-pyrifera_M_contig121793.4482.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121793.4482.1 vs. uniprot
Match: A0A2D4BXK4_PYTIN (SH2 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXK4_PYTIN)

HSP 1 Score: 54.7 bits (130), Expect = 1.830e-6
Identity = 37/114 (32.46%), Postives = 53/114 (46.49%), Query Frame = 1 
Query:    1 PLKVLNVEGEVKRLRSCLLARNRDLRMSVEAATVDTFRMRITSGCDVLHFTGHGTPGRVTLEHARDAVSDDWDGDRLAELMGVGENN-------------VRLVLVAARHSRGV 303
            P+ +++V+ E K L  CL    + +    E A + TFR  ++ GC VLHF+GHG PG+  L+    A   +   D L   +   E               VRLV V+A HS  V
Sbjct:   51 PVDIIDVKEERKLLVQCLREAKKQIVWHTEVADLHTFRKVLSFGCRVLHFSGHGVPGKQELKDLLLAGGMEIADDALNAQISTSEVETDWIALHPPPQVPVRLVFVSACHSESV 164
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BLAST of mRNA_M-pyrifera_M_contig121793.4482.1 vs. uniprot
Match: A0A8K1C3G6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3G6_PYTOL)

HSP 1 Score: 53.9 bits (128), Expect = 3.500e-6
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 PLKVLNVEGEVKRLRSCLLARNRDLRMSVEAATVDTFRMRITSGCDVLHFTGHGTPGRVTLEH 189
            P+ +++V+ E K L  CL    + +    E A + TFR  ++ GC VLHF+GHG PG+V  E+
Sbjct:   74 PVDIIDVKQERKLLVQCLREAKKRIVWHTEVADLHTFRKVLSFGCRVLHFSGHGVPGKVIFEN 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121793.4482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D4BXK4_PYTIN1.830e-632.46SH2 domain-containing protein n=1 Tax=Pythium insi... [more]
A0A8K1C3G6_PYTOL3.500e-639.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121793contigM-pyrifera_M_contig121793:227..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog112098.XP_008612470.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Src homology 2 domains
EggNOG OGs2CNGK@1,2QW5N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.3478515-CDS-M-pyrifera_M_contig121793:226..5321622815737.3478515-CDS-M-pyrifera_M_contig121793:226..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121793 227..532 +
1692277545.7222571-CDS-M-pyrifera_M_contig121793:226..5321692277545.7222571-CDS-M-pyrifera_M_contig121793:226..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121793 227..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121793.4482.1prot_M-pyrifera_M_contig121793.4482.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121793 227..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121793.4482.1

>prot_M-pyrifera_M_contig121793.4482.1 ID=prot_M-pyrifera_M_contig121793.4482.1|Name=mRNA_M-pyrifera_M_contig121793.4482.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
PLKVLNVEGEVKRLRSCLLARNRDLRMSVEAATVDTFRMRITSGCDVLHF
TGHGTPGRVTLEHARDAVSDDWDGDRLAELMGVGENNVRLVLVAARHSRG
VG
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mRNA from alignment at M-pyrifera_M_contig121793:227..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121793.4482.1 ID=mRNA_M-pyrifera_M_contig121793.4482.1|Name=mRNA_M-pyrifera_M_contig121793.4482.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig121793:227..532+ (Macrocystis pyrifera P11B4 male)
CCACTCAAAGTCCTCAACGTAGAAGGCGAGGTGAAGCGGCTCAGGAGCTG
CTTGTTGGCGCGCAACCGGGATTTGCGCATGAGCGTGGAGGCTGCGACTG
TAGATACGTTCCGGATGCGCATCACCAGCGGCTGCGACGTGCTCCACTTT
ACCGGGCATGGAACACCTGGCAGGGTAACCCTGGAGCACGCGCGTGATGC
GGTGAGTGACGACTGGGATGGCGACCGGCTGGCGGAGCTGATGGGTGTGG
GCGAGAACAATGTCCGGCTGGTGCTTGTGGCCGCGCGCCACTCTCGTGGC
GTTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121793:227..532+

>mRNA_M-pyrifera_M_contig121793.4482.1 ID=mRNA_M-pyrifera_M_contig121793.4482.1|Name=mRNA_M-pyrifera_M_contig121793.4482.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig121793:227..532+ (Macrocystis pyrifera P11B4 male)
CCACTCAAAGTCCTCAACGTAGAAGGCGAGGTGAAGCGGCTCAGGAGCTG
CTTGTTGGCGCGCAACCGGGATTTGCGCATGAGCGTGGAGGCTGCGACTG
TAGATACGTTCCGGATGCGCATCACCAGCGGCTGCGACGTGCTCCACTTT
ACCGGGCATGGAACACCTGGCAGGGTAACCCTGGAGCACGCGCGTGATGC
GGTGAGTGACGACTGGGATGGCGACCGGCTGGCGGAGCTGATGGGTGTGG
GCGAGAACAATGTCCGGCTGGTGCTTGTGGCCGCGCGCCACTCTCGTGGC
GTTGGCCCACTCAAAGTCCTCAACGTAGAAGGCGAGGTGAAGCGGCTCAG
GAGCTGCTTGTTGGCGCGCAACCGGGATTTGCGCATGAGCGTGGAGGCTG
CGACTGTAGATACGTTCCGGATGCGCATCACCAGCGGCTGCGACGTGCTC
CACTTTACCGGGCATGGAACACCTGGCAGGGTAACCCTGGAGCACGCGCG
TGATGCGGTGAGTGACGACTGGGATGGCGACCGGCTGGCGGAGCTGATGG
GTGTGGGCGAGAACAATGTCCGGCTGGTGCTTGTGGCCGCGCGCCACTCT
CGTGGCGTTGGC
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