mRNA_M-pyrifera_M_contig12179.4481.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Match: D7FSN0_ECTSI (Mitochondrial import inner membrane translocase subunit TIM16 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSN0_ECTSI) HSP 1 Score: 209 bits (531), Expect = 8.460e-67 Identity = 113/123 (91.87%), Postives = 119/123 (96.75%), Query Frame = 1
Query: 1 MANPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEMKPDLIKKRYDQYFDINDPAKGGSFYLQSKVFRAKEALDEQLALLAKQAADDAAAR 369
MANPFAR+IAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEMKPDLIK+RYDQYF INDP KGGSFYLQSKVFRAKEALDEQLAL AKQA+++AA +
Sbjct: 1 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEMKPDLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQLALQAKQASEEAALK 123
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Match: A0A835YVS4_9STRA (Mitochondrial import inner membrane translocase subunit TIM16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS4_9STRA) HSP 1 Score: 140 bits (354), Expect = 7.740e-40 Identity = 75/115 (65.22%), Postives = 92/115 (80.00%), Query Frame = 1
Query: 1 MANPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEMKPDLIKKRYDQYFDINDPAKGGSFYLQSKVFRAKEALDEQLALLAKQ 345
M+ P AR+IAQL V AGIVSRAFV+AYSQAV NARTGT + K+M+RTSK+ST EA+Q+LNL K EM P I +++ +YF+ NDP KGGSFYLQSKVFRA+E+L E L L AK+
Sbjct: 1 MSGPLARVIAQLMVTGAGIVSRAFVAAYSQAVQNARTGTQQQVKSMTRTSKMSTAEALQVLNLSKAEMDPTRISQQFARYFESNDPNKGGSFYLQSKVFRARESLHETLELAAKR 115
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Match: A0A8K1CVL5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVL5_PYTOL) HSP 1 Score: 106 bits (264), Expect = 1.060e-26 Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 1 MANPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQ-KGEMKPDLIKKRYDQYFDINDPAKGGSFYLQSKVFRAKEALDEQ 324
M+ P R+IAQ V AGIVSRAFV AY QAVHNA+TG + +KA+ R + + +A++ILN G + ++K++ +YF+ NDPAKGGSFYLQSK+FRAKEAL+ +
Sbjct: 1 MSGPLGRIIAQFVVMGAGIVSRAFVQAYQQAVHNAKTGNTAAMTSKAVKRKNVMERSQALEILNFPTSGTPSQEEVQKQFQRYFEANDPAKGGSFYLQSKIFRAKEALERK 111
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Match: M4C0R0_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0R0_HYAAE) HSP 1 Score: 104 bits (259), Expect = 8.910e-26 Identity = 58/110 (52.73%), Postives = 79/110 (71.82%), Query Frame = 1
Query: 1 MANPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQKGEMKPDL--IKKRYDQYFDINDPAKGGSFYLQSKVFRAKEALD 318
M+ P R+IAQ+ V AGIVS+AFV AY QAVHNAR+G + AK ++ K+S +A++ILN + P I+K++ +YF+ NDPAKGGSFYLQSK++RAKEAL+
Sbjct: 1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGTVAAKTVAGKKKMSKQQALEILNFPTSGVVPSTEDIQKQFTRYFEANDPAKGGSFYLQSKIYRAKEALE 110
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Match: A0A0P1AYF2_PLAHL (Mitochondrial import inner membrane translocase subunit tim16 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYF2_PLAHL) HSP 1 Score: 103 bits (256), Expect = 1.660e-25 Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 1 MANPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQKGEMKPDL--IKKRYDQYFDINDPAKGGSFYLQSKVFRAKEALDEQ 324
M+ P R+IAQ+ V AGIVS+AFV AY QAV NAR+G + KA+ R +++ST +A +ILN P L +++++ +YF+ NDPAKGGSFY+QSK++RAKEAL+ Q
Sbjct: 1 MSGPLGRIIAQVVVMGAGIVSKAFVHAYQQAVQNARSGNAAAMKTKAVVRKNQMSTQQAREILNFPVSGPAPSLEDVQRQFKRYFEANDPAKGGSFYIQSKIYRAKEALERQ 112
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Match: D0NVB8_PHYIT (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=D0NVB8_PHYIT) HSP 1 Score: 102 bits (254), Expect = 3.930e-25 Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = 1
Query: 1 MANPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQKGEMKP--DLIKKRYDQYFDINDPAKGGSFYLQSKVFRAKEALDEQ 324
M+ P R+IAQ+ V AGIVS+AFV AY QAVHNAR+G + AK + R +++ +A +ILN P + I+K++ +YF+ NDPAKGGSFYLQSK+FRAKEAL+ +
Sbjct: 1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGAMAAKTVVRKNQMPKQQAREILNFPTSGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALEHK 112
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Match: A0A7S3V4X6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4X6_9STRA) HSP 1 Score: 102 bits (255), Expect = 4.340e-25 Identity = 59/128 (46.09%), Postives = 87/128 (67.97%), Query Frame = 1
Query: 7 NPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSR----TSKLSTLEAMQILNLQKGEMKPDLIKKRYDQYFDINDPAKGGSFYLQSKVFRAKEALDE---QLALLAKQAADDAAAR 369
P AR++AQ AV GI++RA +AY A++NAR G +++AKA S K+S EAMQ+LNL KG++ P ++K++D+YF N KGGSFYLQSK++RAKE LDE + + KQ A +++++
Sbjct: 4 GPIARVLAQAAVMGIGIMARAIPAAYGAALNNARKGGVDAAKANSEGIFGKKKISVDEAMQVLNLVKGDVSPKAVQKQFDRYFATNAVEKGGSFYLQSKIYRAKEQLDEFIRETEEMKKQEASESSSK 131
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Match: A0A5D6XKL2_9STRA (EF-hand domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKL2_9STRA) HSP 1 Score: 109 bits (272), Expect = 5.000e-25 Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 1
Query: 1 MANPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSK----LSTLEAMQILNLQKG-EMKPDLIKKRYDQYFDINDPAKGGSFYLQSKVFRAKEALDEQLALLAKQAADD 357
M+ P AR+IAQ+ V +AG+VSRAFV+AY QAVHNA++G +A A ++ +S +A++ILN KPD + K++ +YF+ NDPAKGGSFYLQSK+FRAKEAL+ + A A+ +
Sbjct: 361 MSGPIARVIAQVVVMTAGVVSRAFVTAYQQAVHNAKSGNTAAAMAAKPAARAKNVMSREQALEILNFPTAAHPKPDEVAKQFTRYFEANDPAKGGSFYLQSKIFRAKEALEREQAAAGGDASQE 484
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Match: A0A2D4C867_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C867_PYTIN) HSP 1 Score: 101 bits (252), Expect = 6.660e-25 Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 1 MANPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGT---LESAKAMSRTSKLSTLEAMQILNLQKGEMKP-DLIKKRYDQYFDINDPAKGGSFYLQSKVFRAKEALDEQ 324
M+ P R+IAQ+ V AGIVSRAFV AY QAVHNA+TG + + A+ R + + +A++ILN + ++K++ +YF+ NDPAKGGSFYLQSK+FRAKEAL+ +
Sbjct: 1 MSGPLGRVIAQVIVMGAGIVSRAFVQAYQQAVHNAKTGNTAAMTAKTAIKRKNVMPRTQALEILNFPTSATPTTEXVQKQFQRYFEANDPAKGGSFYLQSKIFRAKEALERK 112
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Match: W7TWQ8_9STRA (Mitochondrial import inner membrane translocase subunit tim16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWQ8_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 8.340e-24 Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 1 MANPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRT-SKLSTLEAMQILNLQKGEMKPDL-IKKRYDQYFDINDPAKGGSFYLQSKVFRAKEALDEQL 327
M+ PF R++ +AV SA + SRAFV+AY QA+ NA+ G +AKA SRT ++ EA+++LNLQK ++K I +++D+YF N+P KGGSFYLQSKV+RAKE L+ +
Sbjct: 1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAI 111 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12179.4481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12179.4481.1 >prot_M-pyrifera_M_contig12179.4481.1 ID=prot_M-pyrifera_M_contig12179.4481.1|Name=mRNA_M-pyrifera_M_contig12179.4481.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp MANPFARLIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSback to top mRNA from alignment at M-pyrifera_M_contig12179:1533..4745+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12179.4481.1 ID=mRNA_M-pyrifera_M_contig12179.4481.1|Name=mRNA_M-pyrifera_M_contig12179.4481.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3213bp|location=Sequence derived from alignment at M-pyrifera_M_contig12179:1533..4745+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12179:1533..4745+ >mRNA_M-pyrifera_M_contig12179.4481.1 ID=mRNA_M-pyrifera_M_contig12179.4481.1|Name=mRNA_M-pyrifera_M_contig12179.4481.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig12179:1533..4745+ (Macrocystis pyrifera P11B4 male)back to top |