mRNA_M-pyrifera_M_contig121779.4477.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121779.4477.1
Unique NamemRNA_M-pyrifera_M_contig121779.4477.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Match: A0A7S4IJI0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IJI0_9EUKA)

HSP 1 Score: 166 bits (421), Expect = 4.510e-48
Identity = 78/103 (75.73%), Postives = 88/103 (85.44%), Query Frame = 1
Query:    4 IFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTPLTPYIDQELLYNNSLSIDGAAIESTGFSYSVPEVTVDLLKEQIDYYVQQNLFPS 312
            IFGIKTGF G  ISS AKLKLK VTEEINDKHLKPW+DLC+   ILNTPLTPYIDQELLYNNSLS+DG+A+ES GF+Y  P VT +L++EQI YYV QNLFP+
Sbjct:  293 IFGIKTGFFGTVISSAAKLKLKAVTEEINDKHLKPWSDLCKKEGILNTPLTPYIDQELLYNNSLSVDGSAVESLGFTYKYPNVTEELIREQIKYYVDQNLFPT 395          
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Match: A0A151Z9X6_9MYCE (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z9X6_9MYCE)

HSP 1 Score: 159 bits (402), Expect = 1.570e-45
Identity = 69/104 (66.35%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 QIFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTPLTPYIDQELLYNNSLSIDGAAIESTGFSYSVPEVTVDLLKEQIDYYVQQNLFPS 312
            +IF IKTGF G+ +S++AK+ LK++ EE+NDKHLKPW+DLC++  ILNTPLTPYIDQELLYNN LS+DG+AIE+TGF Y VPE+   L++EQIDY++ QNLFP 
Sbjct:  261 KIFTIKTGFAGSIMSNLAKINLKEICEEVNDKHLKPWSDLCKEKGILNTPLTPYIDQELLYNNHLSVDGSAIEATGFKYDVPEINEALIREQIDYFISQNLFPK 364          
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Match: L8GKE8_ACACA (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GKE8_ACACA)

HSP 1 Score: 156 bits (395), Expect = 1.700e-44
Identity = 70/104 (67.31%), Postives = 88/104 (84.62%), Query Frame = 1
Query:    1 QIFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTPLTPYIDQELLYNNSLSIDGAAIESTGFSYSVPEVTVDLLKEQIDYYVQQNLFPS 312
            ++F IKTGFLG+ +S++AKL +K+VTEEINDKHLKPW++LC+   I NTPLTPY+DQELLYNNSLS+DG  IESTGF+Y VP+VT  LL+EQ  Y++ QNLFP 
Sbjct:  260 KLFHIKTGFLGSVVSNMAKLNMKNVTEEINDKHLKPWSELCKAHGITNTPLTPYLDQELLYNNSLSVDGGKIESTGFTYDVPQVTEALLREQAQYFIDQNLFPK 363          
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Match: D3BE39_POLPP (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BE39_POLPP)

HSP 1 Score: 152 bits (385), Expect = 5.120e-43
Identity = 69/104 (66.35%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 QIFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTPLTPYIDQELLYNNSLSIDGAAIESTGFSYSVPEVTVDLLKEQIDYYVQQNLFPS 312
            +IF IKTGFLG+ +S++A+L LK V EE N+KHLKPW+DLC+D  ILNTPLTPYIDQELLYNN LS+DG AIE+TGF Y  PE+T  L++EQI+Y+  Q LFP+
Sbjct:  260 KIFQIKTGFLGSIVSNLAQLNLKGVCEEANNKHLKPWSDLCKDKGILNTPLTPYIDQELLYNNHLSVDGTAIEATGFKYDYPEITDALVREQIEYFTSQRLFPA 363          
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Match: Q86HU8_DICDI (Epimerase domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q86HU8_DICDI)

HSP 1 Score: 151 bits (382), Expect = 1.400e-42
Identity = 68/104 (65.38%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 QIFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTPLTPYIDQELLYNNSLSIDGAAIESTGFSYSVPEVTVDLLKEQIDYYVQQNLFPS 312
            +IF IKTGF+G  +S++A LK+KDV EE+NDKHLKPW+DLC+D  I NTPLTPYIDQELL N  LS+DG AIE  GF Y  PE+T  L++EQIDY++ QNLFP 
Sbjct:  259 KIFAIKTGFVGNMLSNVASLKMKDVCEEVNDKHLKPWSDLCKDKGISNTPLTPYIDQELLSNTHLSVDGTAIEGLGFKYDNPEITEALVREQIDYFINQNLFPK 362          
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Match: F4PWH5_CAVFA (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PWH5_CAVFA)

HSP 1 Score: 149 bits (375), Expect = 1.610e-41
Identity = 65/104 (62.50%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 QIFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTPLTPYIDQELLYNNSLSIDGAAIESTGFSYSVPEVTVDLLKEQIDYYVQQNLFPS 312
            ++F IKTGF G+ +S++AKL LKD+ EE N+KHLKPW+DLC++  I NTPLTPYIDQELLYNN LS+DG+AIES GF+Y  P++T + +KEQI+Y+  Q LFP 
Sbjct:  260 KVFAIKTGFAGSILSNLAKLNLKDICEEANNKHLKPWSDLCKEKGITNTPLTPYIDQELLYNNHLSVDGSAIESIGFTYEHPKLTEEAIKEQIEYFTSQGLFPQ 363          
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Match: A0A8J4PVD8_9MYCE (Epimerase domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PVD8_9MYCE)

HSP 1 Score: 142 bits (357), Expect = 7.860e-39
Identity = 62/104 (59.62%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    1 QIFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTPLTPYIDQELLYNNSLSIDGAAIESTGFSYSVPEVTVDLLKEQIDYYVQQNLFPS 312
            +IF IKT F+G+ +S++A+L L+ +  E NDKHLKPW+DLC+  +I+NTPLTPYIDQELL NN LS+DG+AIESTGF Y  PE+T  L+++QI Y++ Q LFP+
Sbjct:  262 KIFHIKTSFVGSLLSNVAQLNLQSICNEANDKHLKPWSDLCKQKDIVNTPLTPYIDQELLSNNHLSVDGSAIESTGFKYDHPELTEALVRDQIQYFIDQKLFPA 365          
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Match: UPI000644CE46 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644CE46)

HSP 1 Score: 139 bits (349), Expect = 1.090e-37
Identity = 62/104 (59.62%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 QIFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTPLTPYIDQELLYNNSLSIDGAAIESTGFSYSVPEVTVDLLKEQIDYYVQQNLFPS 312
            ++F IKTGF G+ +S++A+L LK V E+ N+KHLKPW+DLC+   ILNTPLTPYIDQELL NN L++DG AIE+TGF Y  PE+T   ++E+I+Y+  QNLFP+
Sbjct:  258 KVFAIKTGFHGSIVSNLAQLNLKAVCEQANNKHLKPWSDLCKQKGILNTPLTPYIDQELLSNNHLAVDGTAIEATGFKYDYPELTEAGIREEIEYFQAQNLFPA 361          
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Match: A0A0L0DB17_THETB (NAD-dependent epimerase/dehydratase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DB17_THETB)

HSP 1 Score: 134 bits (338), Expect = 5.370e-36
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    4 IFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTPLTPYIDQELLYNNSLSIDGAAIESTGFSYSVPEVTVDLLKEQIDYYVQQNLFPST 315
            IFGI T F G   S++A++ L  VTE +N+KHLKPW+DLC+ A I NTPLTPY+DQELLYNN L IDG+ IE TGF+Y VPE+  +L++ QI Y+V Q +FP +
Sbjct:  264 IFGIDTKFAGKIKSNLARVNLSGVTETVNEKHLKPWSDLCKAAGIENTPLTPYLDQELLYNNHLCIDGSKIEGTGFTYEVPEINEELVRAQIAYHVSQGIFPES 367          
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Match: A0A1Y1WIY7_9FUNG (NAD(P)-binding protein n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1WIY7_9FUNG)

HSP 1 Score: 130 bits (326), Expect = 3.570e-34
Identity = 58/105 (55.24%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    1 QIFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTPLTPYIDQELLYNNSLSIDGAAIE-STGFSYSVPEVTVDLLKEQIDYYVQQNLFPS 312
            QIFGIKTGF GA IS+ AKL ++ VTE++NDKHL+PW++LC+++ + NTPLTPY+D+ELL +N+LS+DG  IE   GF+Y+VP VT++ ++E ID +V   ++P 
Sbjct:  268 QIFGIKTGFQGALISNFAKLNMESVTEDVNDKHLQPWSELCKNSGVTNTPLTPYLDKELLKDNALSVDGTKIERELGFTYNVPNVTLEKVREVIDDFVNLGIWPK 372          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121779.4477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IJI0_9EUKA4.510e-4875.73Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A151Z9X6_9MYCE1.570e-4566.35NAD-dependent epimerase/dehydratase family protein... [more]
L8GKE8_ACACA1.700e-4467.31NAD-dependent epimerase/dehydratase family protein... [more]
D3BE39_POLPP5.120e-4366.35NAD-dependent epimerase/dehydratase family protein... [more]
Q86HU8_DICDI1.400e-4265.38Epimerase domain-containing protein n=1 Tax=Dictyo... [more]
F4PWH5_CAVFA1.610e-4162.50NAD-dependent epimerase/dehydratase family protein... [more]
A0A8J4PVD8_9MYCE7.860e-3959.62Epimerase domain-containing protein n=1 Tax=Polysp... [more]
UPI000644CE461.090e-3759.62hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0L0DB17_THETB5.370e-3658.65NAD-dependent epimerase/dehydratase n=1 Tax=Thecam... [more]
A0A1Y1WIY7_9FUNG3.570e-3455.24NAD(P)-binding protein n=4 Tax=Neocallimastigaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121779contigM-pyrifera_M_contig121779:1..318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue1.1e-34
Seed eggNOG ortholog44689.DDB0234265
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD(P)H-binding
EggNOG OGs3X85M@554915,COG0451@1,KOG1430@2759
COG Functional cat.EI
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.107929-CDS-M-pyrifera_M_contig121779:0..3181622815737.107929-CDS-M-pyrifera_M_contig121779:0..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121779 1..318 +
1692277545.5911498-CDS-M-pyrifera_M_contig121779:0..3181692277545.5911498-CDS-M-pyrifera_M_contig121779:0..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121779 1..318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121779.4477.1prot_M-pyrifera_M_contig121779.4477.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121779 1..318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121779.4477.1

>prot_M-pyrifera_M_contig121779.4477.1 ID=prot_M-pyrifera_M_contig121779.4477.1|Name=mRNA_M-pyrifera_M_contig121779.4477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
QIFGIKTGFLGAAISSIAKLKLKDVTEEINDKHLKPWADLCRDAEILNTP
LTPYIDQELLYNNSLSIDGAAIESTGFSYSVPEVTVDLLKEQIDYYVQQN
LFPST*
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mRNA from alignment at M-pyrifera_M_contig121779:1..318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121779.4477.1 ID=mRNA_M-pyrifera_M_contig121779.4477.1|Name=mRNA_M-pyrifera_M_contig121779.4477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig121779:1..318+ (Macrocystis pyrifera P11B4 male)
CAGATCTTCGGCATCAAGACCGGCTTCCTCGGCGCCGCCATCTCTTCCAT CGCCAAGCTCAAGCTCAAGGACGTGACGGAGGAGATCAACGACAAGCACC TCAAGCCCTGGGCAGACCTCTGCAGGGACGCCGAGATCCTCAACACGCCC CTCACGCCCTACATCGACCAGGAGCTGCTCTACAACAACTCCCTCTCCAT CGACGGCGCAGCCATCGAGTCGACCGGCTTCTCCTACTCGGTCCCCGAGG TCACCGTCGACCTCCTCAAGGAGCAGATCGACTACTACGTGCAGCAGAAC CTCTTCCCCAGCACATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121779:1..318+

>mRNA_M-pyrifera_M_contig121779.4477.1 ID=mRNA_M-pyrifera_M_contig121779.4477.1|Name=mRNA_M-pyrifera_M_contig121779.4477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig121779:1..318+ (Macrocystis pyrifera P11B4 male)
CAGATCTTCGGCATCAAGACCGGCTTCCTCGGCGCCGCCATCTCTTCCAT
CGCCAAGCTCAAGCTCAAGGACGTGACGGAGGAGATCAACGACAAGCACC
TCAAGCCCTGGGCAGACCTCTGCAGGGACGCCGAGATCCTCAACACGCCC
CTCACGCCCTACATCGACCAGGAGCTGCTCTACAACAACTCCCTCTCCAT
CGACGGCGCAGCCATCGAGTCGACCGGCTTCTCCTACTCGGTCCCCGAGG
TCACCGTCGACCTCCTCAAGGAGCAGATCGACTACTACGTGCAGCAGAAC
CTCTTCCCCAGCACATAGCAGATCTTCGGCATCAAGACCGGCTTCCTCGG
CGCCGCCATCTCTTCCATCGCCAAGCTCAAGCTCAAGGACGTGACGGAGG
AGATCAACGACAAGCACCTCAAGCCCTGGGCAGACCTCTGCAGGGACGCC
GAGATCCTCAACACGCCCCTCACGCCCTACATCGACCAGGAGCTGCTCTA
CAACAACTCCCTCTCCATCGACGGCGCAGCCATCGAGTCGACCGGCTTCT
CCTACTCGGTCCCCGAGGTCACCGTCGACCTCCTCAAGGAGCAGATCGAC
TACTACGTGCAGCAGAACCTCTTCCCCAGCACATAG
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