mRNA_M-pyrifera_M_contig121772.4475.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121772.4475.1
Unique NamemRNA_M-pyrifera_M_contig121772.4475.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A382VBM2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382VBM2_9ZZZZ)

HSP 1 Score: 90.9 bits (224), Expect = 2.670e-21
Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 VEGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLPI 333
            ++ Y D GF++GG  +  SL++       W  S   + + ES+A +    PP+ELLL+GCG+ +E+ PH +R+ LR   I ++ ++T +A  T+NVL +E RRVA AL+ I
Sbjct:   14 IDHYGDGGFRVGGERYEGSLIVAPEQVWPWTISDIAQLTAESVAAVLAADPPIELLLIGCGTRVERVPHDVRKALRARTIIVDGMETGAACRTYNVLMVEERRVAVALIAI 124          
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A3S3N569_9MAGN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3N569_9MAGN)

HSP 1 Score: 92.0 bits (227), Expect = 3.180e-21
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    4 EGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
            +GY+D GF + G  +  S+L++ +  + W      E + ESL++   L+P  ++LL+GCG +IE     LR  LR   + LE++D+R+A STFN+LN EGR VAAALLP
Sbjct:   58 QGYSDTGFTVNGVDYEGSVLVYEKLVMSWSPKKFSEITQESLSIFKILKPVPDILLLGCGRYIEPIDPELRRFLRSTGMKLEVIDSRNASSTFNILNEEGRMVAAALLP 166          
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A7H1N6T3_9PROT (Uncharacterized protein n=2 Tax=Defluviicoccus vanus TaxID=111831 RepID=A0A7H1N6T3_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 5.510e-21
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    1 VEGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLPIN 336
            +  Y D GF++ G+ +  SLL+F      W   T  + SL+SL  +TR +  V LL+VGCG      P  +++ L K  + LE +DT +A  T+NVL LEGR VAAALL +N
Sbjct:   14 ITSYGDGGFKISGKRYEGSLLVFPNRTHPWPVVTLGDVSLDSLMPVTRTEEGVRLLIVGCGRQFSPTPLAMQQALFKLGVALEWMDTGAACRTYNVLVLEGREVAAALLAVN 125          
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A0D2WX21_CAPO3 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WX21_CAPO3)

HSP 1 Score: 90.5 bits (223), Expect = 6.110e-21
Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 VEGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLPI 333
            ++ ++  GF + G  +  S+ LF R  + W   + +E + ESL L   + P +ELLL+G GS IE     +R+ L++  I+LE+LDT  A +TFN L+ EGR VAAAL+PI
Sbjct:   22 IDSFSSMGFTVNGVTYVGSMALFPRVPLLWNVKSVEELTPESLTLFHLVNPKIELLLIGTGSKIETIDPAVRQMLKEKRISLEVLDTPHAATTFNFLSQEGRLVAAALIPI 132          
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A1Y1HLD5_KLENI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HLD5_KLENI)

HSP 1 Score: 89.0 bits (219), Expect = 2.860e-20
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 VEGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
            ++ Y++ GF + G     +++ F  +  +W  S+  + + +SLA+   ++P  ELL++GCGSH+      +R  LRKH I LE   T +A  TFNVLN EGR+VAAALLP
Sbjct:   34 IDAYDETGFVVDGVDIRGAIVCFGNSTFRWNVSSIADVTPDSLAIFEAIRPAPELLVLGCGSHMVPVSKEVRSFLRKHGIGLEPESTANAAGTFNVLNEEGRKVAAALLP 143          
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: UPI001929C19D (LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929C19D)

HSP 1 Score: 89.4 bits (220), Expect = 3.500e-20
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    4 EGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
            +GY D GF + G  +  SLL+     + W      E + ESL++   ++P  E+L++GCG HIE     LR  +R   + LE +D+R+A ST+N+LN EGR VAAALLP
Sbjct:   56 QGYTDTGFTVNGVKYEGSLLIIDNKLMSWSPKRFSEITAESLSIFQIVRPVPEILILGCGRHIEPVSLELRRFIRSTGMKLEAIDSRNAASTYNILNEEGRVVAAALLP 164          
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A2D9HXS0_9PROT (Uncharacterized protein n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2D9HXS0_9PROT)

HSP 1 Score: 87.8 bits (216), Expect = 4.340e-20
Identity = 41/111 (36.94%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 VEGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLPI 333
            ++ Y    FQ+ G A+   +++F    V W  + A + SL++L+L+ +  PP+E+LL+G G  +E  P  LR+ +R   ++++++ T +A  TFNVL +EGRR AAAL+P+
Sbjct:   14 IDSYGPGRFQVRGIAYQGPVIVFPTHVVPWSLTRAADVSLDALSLVQQESPPIEVLLLGTGEWMEMIPSALRDTIRNAGLSMDIMKTGAACRTFNVLMIEGRRAAAALIPV 124          
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A1U7ZWS3_NELNU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZWS3_NELNU)

HSP 1 Score: 89.0 bits (219), Expect = 5.060e-20
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    4 EGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
            +GY D GF + G  +  SLL      + W      E + +SL++L  ++P  E+L++GCG HIE     LR  +R   + LE +D+R+A ST+N+LN EGR VAAALLP
Sbjct:   58 QGYTDTGFTVNGVKYEGSLLCIGNLLMSWGPKKFSEITADSLSILQVIRPTPEILILGCGRHIEHVNPELRNFIRSIGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166          
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A835SG10_VANPL (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=3 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835SG10_VANPL)

HSP 1 Score: 88.6 bits (218), Expect = 7.500e-20
Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    4 EGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
            + Y++ GF + G  +  SLL+     + W      E + ESL++   L+P  E+L++GCG HI+     LR+ LR   I LE +D+R+A ST+N+LN EGR VAAALLP
Sbjct:   60 QRYSETGFTINGVKYEGSLLIVENKVMSWAPKRFSEINAESLSIFKVLRPVPEILVLGCGRHIDFVNEELRQFLRSIGIKLEAIDSRNAASTYNILNEEGRMVAAALLP 168          
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Match: A0A5P1F1K6_ASPOF (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F1K6_ASPOF)

HSP 1 Score: 88.6 bits (218), Expect = 8.050e-20
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    4 EGYNDHGFQMGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGCGSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP 330
            +GY D GF + G  +  SLL+     + W      E + ESL++   L+P  E+L++GCG +IE     LR  +R   + LE +D+R+A ST+N+LN EGR VAAALLP
Sbjct:   63 QGYTDTGFTVNGVKYEGSLLIVENKLMTWAPKRFSEITAESLSIFQVLRPIPEILIIGCGKNIELISPELRRFIRSTGMKLEAVDSRNAASTYNILNEEGRMVAAALLP 171          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121772.4475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A382VBM2_9ZZZZ2.670e-2138.74Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A3S3N569_9MAGN3.180e-2143.12NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7H1N6T3_9PROT5.510e-2141.96Uncharacterized protein n=2 Tax=Defluviicoccus van... [more]
A0A0D2WX21_CAPO36.110e-2141.44NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A1Y1HLD5_KLENI2.860e-2040.91NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
UPI001929C19D3.500e-2042.20LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinon... [more]
A0A2D9HXS0_9PROT4.340e-2036.94Uncharacterized protein n=3 Tax=Rhodospirillales T... [more]
A0A1U7ZWS3_NELNU5.060e-2042.20NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A835SG10_VANPL7.500e-2042.20NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A5P1F1K6_ASPOF8.050e-2042.20NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121772contigM-pyrifera_M_contig121772:72..513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue6e-14
Seed eggNOG ortholog653948.CCA26592
Preferred nameNDUFAF3
KEGG rclassRC00002,RC00015
KEGG koko:K00873,ko:K09008,ko:K09228,ko:K14792,ko:K17770
KEGG TC3.A.8.1
KEGG ReactionR00200,R00430,R01138,R01858,R02320
KEGG Pathwayko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04714,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04714,map04922,map04930,map05165,map05203,map05230
KEGG ModuleM00001,M00002,M00049,M00050
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010257,GO:0016020,GO:0016043,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0033108,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0065003,GO:0071840
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsKOG3363@1,KOG3363@2759
EC2.7.1.40
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03000,ko03009,ko03029,ko04131,ko04147
Exons2
Model size336
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121772.4475.1prot_M-pyrifera_M_contig121772.4475.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121772 72..483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.996644-CDS-M-pyrifera_M_contig121772:71..1461622815736.996644-CDS-M-pyrifera_M_contig121772:71..146Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121772 72..146 -
1692277545.5470493-CDS-M-pyrifera_M_contig121772:71..1461692277545.5470493-CDS-M-pyrifera_M_contig121772:71..146Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121772 72..146 -
1622815737.0137424-CDS-M-pyrifera_M_contig121772:252..4831622815737.0137424-CDS-M-pyrifera_M_contig121772:252..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121772 253..483 -
1692277545.5570447-CDS-M-pyrifera_M_contig121772:252..4831692277545.5570447-CDS-M-pyrifera_M_contig121772:252..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121772 253..483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.0277355-UTR-M-pyrifera_M_contig121772:483..5131622815737.0277355-UTR-M-pyrifera_M_contig121772:483..513Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121772 484..513 -
1692277545.564585-UTR-M-pyrifera_M_contig121772:483..5131692277545.564585-UTR-M-pyrifera_M_contig121772:483..513Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121772 484..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121772.4475.1

>prot_M-pyrifera_M_contig121772.4475.1 ID=prot_M-pyrifera_M_contig121772.4475.1|Name=mRNA_M-pyrifera_M_contig121772.4475.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MGGRAFFHSLLLFRRTAVQWRASTAQEASLESLALLTRLQPPVELLLVGC
GSHIEQPPHGLREELRKHNITLEMLDTRSALSTFNVLNLEGRRVAAALLP
IN
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mRNA from alignment at M-pyrifera_M_contig121772:72..513-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121772.4475.1 ID=mRNA_M-pyrifera_M_contig121772.4475.1|Name=mRNA_M-pyrifera_M_contig121772.4475.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=442bp|location=Sequence derived from alignment at M-pyrifera_M_contig121772:72..513- (Macrocystis pyrifera P11B4 male)
GTGGAGGGCTACAACGACCACGGCTTCCAGATGGGTGGCAGGGCATTCTT CCACTCGTTGCTCCTCTTCCGGCGCACTGCAGTTCAGTGGAGGGCATCTA CAGCACAGGAGGCGAGCCTGGAGTCTCTCGCACTGCTCACTCGCCTGCAG CCGCCGGTGGAGTTGCTGTTGGTCGGCTGTGGCTCACACATCGAGCAGCC ACCGCACGGACTCCGCGAGGAACTGCGCAAGCACAACATCACACTGGAGA TGCTCGACACCGTCCGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCACACA CACACTCTCTCTCTCACACTCTCTCCCGCCTTACACCAGCCTCATGTAGG CGCTGACGGGCAAGCAGAGAAGTGCGCTGTCAACGTTCAATGTACTCAAC CTGGAGGGCAGGAGGGTGGCGGCGGCGCTGCTGCCCATCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121772:72..513-

>mRNA_M-pyrifera_M_contig121772.4475.1 ID=mRNA_M-pyrifera_M_contig121772.4475.1|Name=mRNA_M-pyrifera_M_contig121772.4475.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig121772:72..513- (Macrocystis pyrifera P11B4 male)
ATGGGTGGCAGGGCATTCTTCCACTCGTTGCTCCTCTTCCGGCGCACTGC
AGTTCAGTGGAGGGCATCTACAGCACAGGAGGCGAGCCTGGAGTCTCTCG
CACTGCTCACTCGCCTGCAGCCGCCGGTGGAGTTGCTGTTGGTCGGCTGT
GGCTCACACATCGAGCAGCCACCGCACGGACTCCGCGAGGAACTGCGCAA
GCACAACATCACACTGGAGATGCTCGACACCATGGGTGGCAGGGCATTCT
TCCACTCGTTGCTCCTCTTCCGGCGCACTGCAGTTCAGTGGAGGGCATCT
ACAGCACAGGAGGCGAGCCTGGAGTCTCTCGCACTGCTCACTCGCCTGCA
GCCGCCGGTGGAGTTGCTGTTGGTCGGCTGTGGCTCACACATCGAGCAGC
CACCGCACGGACTCCGCGAGGAACTGCGCAAGCACAACATCACACTGGAG
ATGCTCGACACCAGAAGTGCGCTGTCAACGTTCAATGTACTCAACCTGGA
GGGCAGGAGGGTGGCGGCGGCGCTGCTGCCCATCAACAGAAGTGCGCTGT
CAACGTTCAATGTACTCAACCTGGAGGGCAGGAGGGTGGCGGCGGCGCTG
CTGCCCATCAAC
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