mRNA_M-pyrifera_M_contig12176.4472.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12176.4472.1
Unique NamemRNA_M-pyrifera_M_contig12176.4472.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12176.4472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12176contigM-pyrifera_M_contig12176:1759..2278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12176.4472.1prot_M-pyrifera_M_contig12176.4472.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12176 1801..2100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.8388367-UTR-M-pyrifera_M_contig12176:1758..18001622815736.8388367-UTR-M-pyrifera_M_contig12176:1758..1800Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12176 1759..1800 +
1692277545.4816701-UTR-M-pyrifera_M_contig12176:1758..18001692277545.4816701-UTR-M-pyrifera_M_contig12176:1758..1800Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12176 1759..1800 +
1622815736.8651223-UTR-M-pyrifera_M_contig12176:2100..22781622815736.8651223-UTR-M-pyrifera_M_contig12176:2100..2278Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12176 2101..2278 +
1692277545.5008183-UTR-M-pyrifera_M_contig12176:2100..22781692277545.5008183-UTR-M-pyrifera_M_contig12176:2100..2278Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12176 2101..2278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.854717-CDS-M-pyrifera_M_contig12176:1800..21001622815736.854717-CDS-M-pyrifera_M_contig12176:1800..2100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12176 1801..2100 +
1692277545.4903843-CDS-M-pyrifera_M_contig12176:1800..21001692277545.4903843-CDS-M-pyrifera_M_contig12176:1800..2100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12176 1801..2100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12176.4472.1

>prot_M-pyrifera_M_contig12176.4472.1 ID=prot_M-pyrifera_M_contig12176.4472.1|Name=mRNA_M-pyrifera_M_contig12176.4472.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MHAGEVVRYVRFAHVPGTAGILWCSTVESFRGVICGVTGKVFCCGSWRVS
ELLFVVVVLVFCCVPTRPANRLRCVDLIRPDLRDFESLLARPDSTRPDP*
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mRNA from alignment at M-pyrifera_M_contig12176:1759..2278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12176.4472.1 ID=mRNA_M-pyrifera_M_contig12176.4472.1|Name=mRNA_M-pyrifera_M_contig12176.4472.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=520bp|location=Sequence derived from alignment at M-pyrifera_M_contig12176:1759..2278+ (Macrocystis pyrifera P11B4 male)
CGATTGGCGTAAGACGGCGTATGCCGCAGGCCGCTAGCGAGCATGCATGC
AGGGGAGGTTGTTCGTTACGTGCGTTTTGCGCACGTGCCGGGTACTGCCG
GCATATTGTGGTGCTCTACGGTGGAGAGCTTTCGTGGGGTGATCTGTGGT
GTTACCGGTAAGGTGTTTTGTTGTGGCAGTTGGCGCGTATCCGAATTGCT
CTTTGTTGTTGTTGTCCTCGTGTTCTGTTGTGTACCGACCCGACCCGCGA
ATCGTTTGAGGTGTGTTGACTTGATCCGACCCGACCTACGAGATTTTGAA
AGCCTCTTGGCCCGACCCGACTCGACCCGACCCGACCCGTGAGATTTGAA
AGTCTCCTGACCCGACCCGATCCGATCCGCGAGGTTCCAAACCTCCTCAC
CCGACCTGACCCGACCCGCCACCTTCTGATTGACCCGTGAGTCACGGGTT
TCGGGTCGCGGGTCGGGTCACCTTCCATTTATCTTGACCCCCAGGTTCGA
CACGCGGATCCAGCCTTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12176:1759..2278+

>mRNA_M-pyrifera_M_contig12176.4472.1 ID=mRNA_M-pyrifera_M_contig12176.4472.1|Name=mRNA_M-pyrifera_M_contig12176.4472.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig12176:1759..2278+ (Macrocystis pyrifera P11B4 male)
ATGCATGCAGGGGAGGTTGTTCGTTACGTGCGTTTTGCGCACGTGCCGGG
TACTGCCGGCATATTGTGGTGCTCTACGGTGGAGAGCTTTCGTGGGGTGA
TCTGTGGTGTTACCGGTAAGGTGTTTTGTTGTGGCAGTTGGCGCGTATCC
GAATTGCTCTTTGTTGTTGTTGTCCTCGTGTTCTGTTGTGTACCGACCCG
ACCCGCGAATCGTTTGAGGTGTGTTGACTTGATCCGACCCGACCTACGAG
ATTTTGAAAGCCTCTTGGCCCGACCCGACTCGACCCGACCCGACCCGTGA
ATGCATGCAGGGGAGGTTGTTCGTTACGTGCGTTTTGCGCACGTGCCGGG
TACTGCCGGCATATTGTGGTGCTCTACGGTGGAGAGCTTTCGTGGGGTGA
TCTGTGGTGTTACCGGTAAGGTGTTTTGTTGTGGCAGTTGGCGCGTATCC
GAATTGCTCTTTGTTGTTGTTGTCCTCGTGTTCTGTTGTGTACCGACCCG
ACCCGCGAATCGTTTGAGGTGTGTTGACTTGATCCGACCCGACCTACGAG
ATTTTGAAAGCCTCTTGGCCCGACCCGACTCGACCCGACCCGACCCGTGA
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