mRNA_M-pyrifera_M_contig121750.4468.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121750.4468.1
Unique NamemRNA_M-pyrifera_M_contig121750.4468.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Match: A0A7Y2N6Z0_9ACTN (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N6Z0_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 2.020e-24
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    4 HHLDVYRIDDLAETLDLDLPELLEHGVTVIEWGEQIEPVLPQDRLTIRLLLGDDDDDRILRFE 192
            HHLDVYR++DLAETLDLDLPELLE GVTVIEWG+ I  VLP DRLT+RL + D DD+R L FE
Sbjct:   79 HHLDVYRLEDLAETLDLDLPELLESGVTVIEWGDSITDVLPTDRLTVRLEMTDVDDERSLWFE 141
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BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Match: A0A2E7A5J8_9ACTN (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=6 Tax=Actinobacteria TaxID=201174 RepID=A0A2E7A5J8_9ACTN)

HSP 1 Score: 95.5 bits (236), Expect = 5.250e-23
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:    1 LHHLDVYRIDDLAETLDLDLPELLEHGVTV-IEWGEQIEPVLPQDRLTIRLLLG---DDDDDRILRFEPGASTWARRLTPLADL 240
            LHHLDVYR+D+LAE LDLDLPELLE   T+ IEWGE + P LP+D L IR+ LG   D DD R+L  EP  S+W  R + L D+
Sbjct:   73 LHHLDVYRLDNLAEVLDLDLPELLEDQATICIEWGEVVVPELPRDFLRIRIQLGHPEDIDDARVLEIEPIGSSWVSRSSQLEDI 156
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BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Match: A0A2E0T0X3_9ACTN (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T0X3_9ACTN)

HSP 1 Score: 91.7 bits (226), Expect = 1.380e-21
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    1 LHHLDVYRIDDLAETLDLDLPELLEHGVTVIEWGEQIEPVLPQDRLTIRLLLGDDDDDRILRFEPGASTWARRLTPLADLADRLAP 258
            ++HLD YRI+   +  DL +PELLE GVT++EWG  I P LP DRL +R+LL DDDD+R + F      W  RL   A LA RL P
Sbjct:   73 VNHLDAYRIEQFGDAEDLAIPELLEDGVTLVEWGNNILPALPADRLEVRILLADDDDERRIEFVAVGEHWTSRL---AGLARRLVP 155
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BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Match: A0A7Y2DM58_9ACTN (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DM58_9ACTN)

HSP 1 Score: 90.5 bits (223), Expect = 4.020e-21
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    1 LHHLDVYRIDDLAETLDLDLPELLEHGVTVIEWGEQIEPVLPQDRLTIRLLLGDDDD---DRILRFEPGAST--WARRL 222
            LHHLDVYR+DDLAETLDLDLPEL++ GVT+IEWG++IE VLP +RL +R+ +  DD     RI     GAS   W  RL
Sbjct:   78 LHHLDVYRLDDLAETLDLDLPELIDSGVTIIEWGDRIEDVLPCERLIVRIAVDPDDPIGRRRIAIEAIGASVDNWRARL 156
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BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Match: A0A358A2A1_9ACTN (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A2A1_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 1.630e-20
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 LHHLDVYRIDDLAETLDLDLPELLEHGVTVIEWGEQIEPVLPQDRLTIRLLLGDDDDDRILRFEPGASTWARRLTPLADLADRL 252
            ++HLD YRI+   +  DL +PELLE GVT++EWG  I P LP DRL +R+LL D+DD+R + F      W  RL   A+LA RL
Sbjct:   34 VNHLDAYRIEQFGDAEDLAIPELLEDGVTLVEWGNNILPALPADRLEVRILLADNDDERRIEFIALGERWTSRL---AELARRL 114
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BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Match: A0A2D6FUL3_9ACTN (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=3 Tax=Bacteria TaxID=2 RepID=A0A2D6FUL3_9ACTN)

HSP 1 Score: 88.2 bits (217), Expect = 3.920e-20
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 LHHLDVYRIDDLAETLDLDLPELLE-HGVTVIEWGEQIEPVLPQDRLTIRLLLG---DDDDDRILRFEPGASTWARRLTPLA 234
            LHHLDVYR+D+LAE LDLDLPELLE H    IEWGE + P LP+D L IR+ LG   D +D R+   EP   +W  R   L+
Sbjct:   73 LHHLDVYRLDNLAEVLDLDLPELLEDHAAICIEWGEVVVPELPRDFLRIRIQLGHPEDIEDARVFEIEPIGPSWVSRTAELS 154
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BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Match: A0A2E4W1Q6_9ACTN (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=8 Tax=Actinobacteria TaxID=201174 RepID=A0A2E4W1Q6_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 4.560e-20
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 LHHLDVYRIDDLAETLDLDLPELLE-HGVTVIEWGEQIEPVLPQDRLTIRLLLGDDDDDRILRFEPGASTWARRLTPLAD 237
            L+HLDVYRI+DL E  DL LPELLE   VT+IEWG+QI P +PQ+ L IR   G +DD+RI+R     S+W +R+  L +
Sbjct:   73 LNHLDVYRIEDLEEVRDLALPELLEGETVTLIEWGDQIVPSIPQNYLEIRFEYGQEDDERIVRISHTGSSWHKRIEQLQE 152
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BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Match: A0A2D7UW33_9ACTN (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D7UW33_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 5.540e-20
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 LHHLDVYRIDDLAETLDLDLPELLE-HGVTVIEWGEQIEPVLPQDRLTIRLLLG---DDDDDRILRFEPGASTWARRLTPL 231
            LHHLDVYR+D+LAE LDLDLPELLE H    IEWGE + P LP+D L IR+ LG   D +D R+   EP   +W  R   L
Sbjct:   73 LHHLDVYRLDNLAEVLDLDLPELLEDHAAICIEWGEVVVPELPRDFLRIRIQLGHPEDIEDARVFEIEPIGPSWVSRTAEL 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Match: A0A6B1B552_9ACTN (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B552_9ACTN)

HSP 1 Score: 88.2 bits (217), Expect = 6.810e-20
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 LHHLDVYRIDDLAETLDLDLPELLEHGVTVIEWGEQIEPVLPQDRLTIRLLLGDDDDDRILRFEPGASTWARRL----TPLADLADR 249
            ++HLDVYR++DL E  DL +PELLE GVT+IEWG+ I P LP +RL + +  GD DDDR +        W  R+    T   + ADR
Sbjct:  102 VNHLDVYRLEDLVEARDLAIPELLEQGVTLIEWGQMILPALPTERLDVSITFGDGDDDRCIELNAVGDNWVSRVGALRTATQNWADR 188
[Close]
BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Match: A0A2E4XKV5_9ACTN (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4XKV5_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 9.130e-20
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    1 LHHLDVYRIDDLAETLDLDLPELLE-HGVTVIEWGEQIEPVLPQDRLTIRLLLGDDDDDRILRFEPGASTWARRLTPLADLAD 246
            LHHLDVYRI+DL E  DL LPELLE   VTVIEWG+QI P +PQ+ L +RL  G +DD R L       +W  R+  L +  D
Sbjct:   73 LHHLDVYRIEDLDEVRDLALPELLEGDSVTVIEWGDQIVPAVPQNYLEVRLEYGLEDDQRYLTISRIGESWKNRMEALQEAVD 155
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121750.4468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2N6Z0_9ACTN2.020e-2474.60tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A2E7A5J8_9ACTN5.250e-2358.33tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A2E0T0X3_9ACTN1.380e-2151.16tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A7Y2DM58_9ACTN4.020e-2159.49tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A358A2A1_9ACTN1.630e-2050.00tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A2D6FUL3_9ACTN3.920e-2054.88tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A2E4W1Q6_9ACTN4.560e-2053.75tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A2D7UW33_9ACTN5.540e-2055.56tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A6B1B552_9ACTN6.810e-2047.13tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A2E4XKV5_9ACTN9.130e-2053.01tRNA threonylcarbamoyladenosine biosynthesis prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121750contigM-pyrifera_M_contig121750:5..268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.2
Seed ortholog evalue2.2e-09
Seed eggNOG ortholog469371.Tbis_0611
Preferred nameydiB
KEGG rclassRC00002,RC00078,RC00285
KEGG koko:K01775,ko:K06925,ko:K07102
KEGG ReactionR00401,R08968,R11024
KEGG Pathwayko00473,ko00520,ko01100,ko01502,map00473,map00520,map01100,map01502
Hectar predicted targeting categoryother localisation
GOsGO:0002949,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.PFAM Uncharacterised P-loop hydrolase UPF0079
EggNOG OGs2IKV2@201174,4E4AJ@85010,COG0802@1,COG0802@2
EC2.7.1.221,5.1.1.1
COG Functional cat.S
Best tax levelPseudonocardiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01011,ko03016
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.6626508-CDS-M-pyrifera_M_contig121750:4..2681622815736.6626508-CDS-M-pyrifera_M_contig121750:4..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121750 5..268 +
1692277545.4235275-CDS-M-pyrifera_M_contig121750:4..2681692277545.4235275-CDS-M-pyrifera_M_contig121750:4..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121750 5..268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121750.4468.1prot_M-pyrifera_M_contig121750.4468.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121750 5..268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121750.4468.1

>prot_M-pyrifera_M_contig121750.4468.1 ID=prot_M-pyrifera_M_contig121750.4468.1|Name=mRNA_M-pyrifera_M_contig121750.4468.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
LHHLDVYRIDDLAETLDLDLPELLEHGVTVIEWGEQIEPVLPQDRLTIRL
LLGDDDDDRILRFEPGASTWARRLTPLADLADRLAPC*
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mRNA from alignment at M-pyrifera_M_contig121750:5..268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121750.4468.1 ID=mRNA_M-pyrifera_M_contig121750.4468.1|Name=mRNA_M-pyrifera_M_contig121750.4468.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig121750:5..268+ (Macrocystis pyrifera P11B4 male)
CTCCATCACCTCGACGTCTATCGCATCGACGATCTCGCCGAGACCCTCGA
CCTCGACCTGCCGGAACTGCTCGAGCATGGGGTCACCGTCATCGAGTGGG
GTGAACAGATCGAGCCCGTGCTGCCGCAAGACCGGCTCACCATCCGACTG
TTGCTCGGCGATGACGATGACGACCGGATCCTGCGTTTCGAACCGGGTGC
ATCCACGTGGGCTCGGCGGTTGACGCCTCTGGCCGACCTCGCCGATCGGC
TTGCCCCGTGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121750:5..268+

>mRNA_M-pyrifera_M_contig121750.4468.1 ID=mRNA_M-pyrifera_M_contig121750.4468.1|Name=mRNA_M-pyrifera_M_contig121750.4468.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig121750:5..268+ (Macrocystis pyrifera P11B4 male)
CTCCATCACCTCGACGTCTATCGCATCGACGATCTCGCCGAGACCCTCGA
CCTCGACCTGCCGGAACTGCTCGAGCATGGGGTCACCGTCATCGAGTGGG
GTGAACAGATCGAGCCCGTGCTGCCGCAAGACCGGCTCACCATCCGACTG
TTGCTCGGCGATGACGATGACGACCGGATCCTGCGTTTCGAACCGGGTGC
ATCCACGTGGGCTCGGCGGTTGACGCCTCTGGCCGACCTCGCCGATCGGC
TTGCCCCGTGTTGACTCCATCACCTCGACGTCTATCGCATCGACGATCTC
GCCGAGACCCTCGACCTCGACCTGCCGGAACTGCTCGAGCATGGGGTCAC
CGTCATCGAGTGGGGTGAACAGATCGAGCCCGTGCTGCCGCAAGACCGGC
TCACCATCCGACTGTTGCTCGGCGATGACGATGACGACCGGATCCTGCGT
TTCGAACCGGGTGCATCCACGTGGGCTCGGCGGTTGACGCCTCTGGCCGA
CCTCGCCGATCGGCTTGCCCCGTGTTGA
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