mRNA_M-pyrifera_M_contig121730.4462.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121730.4462.1
Unique NamemRNA_M-pyrifera_M_contig121730.4462.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Match: A0A6H5JAG5_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 7.900e-24
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 QGRMFQVEYAMEATRRGRTVVGVCGDGCVALVTRDPPQPQPQPSCRAV-KDRGVWEVDCHVGVAASG 198
            +GR++QVEYAMEATRRGRTV+GVCG GCVALVTRDP  P    SCRA    +GVW VD HVG+AA G
Sbjct:   39 KGRIYQVEYAMEATRRGRTVLGVCGGGCVALVTRDPSPPTS--SCRAAGPHKGVWAVDTHVGIAACG 103          
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Match: A0A662J1B8_9CREN (Proteasome subunit alpha n=2 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662J1B8_9CREN)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-7
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    4 GRMFQVEYAMEATRRGRTVVGV-CGDGCVALVTRDPPQPQPQPSCRAVKDRGVWEVDCHVGVAASG 198
            GR+FQVEYA+EA RRG T +GV C +G V  V +    P   PS        +W++D HVGVA +G
Sbjct:   20 GRLFQVEYALEAVRRGWTTLGVRCPEGAVLAVEKKRILPLVDPSSM----EKIWKIDEHVGVAYAG 81          
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Match: A0A7C4JD40_9ARCH (Proteasome subunit alpha n=3 Tax=TACK group TaxID=1783275 RepID=A0A7C4JD40_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 2.510e-7
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 QGRMFQVEYAMEATRRGRTVVGV-CGDGCVALVTRDPPQPQPQPSCRAVKDRGVWEVDCHVGVAASG 198
            +GR++QVEYA+EA +RG T +G+ C DG V  V +    P   P         +W+VD HVG+A +G
Sbjct:   19 EGRLYQVEYALEAVKRGWTTLGIKCKDGVVVAVEKKRISPLVDPETM----EKIWKVDDHVGIAYAG 81          
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Match: A0A7C2WB74_9ARCH (Proteasome subunit alpha n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7C2WB74_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 2.510e-7
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 QGRMFQVEYAMEATRRGRTVVGV-CGDGCVALVTRDPPQPQPQPSCRAVKDRGVWEVDCHVGVAASG 198
            +GR++QVEYA+EA +RG T +G+ C DG V  V +    P   P         +W+VD HVG+A +G
Sbjct:   19 EGRLYQVEYALEAVKRGWTTLGIRCRDGVVVAVEKKRISPLVDPETM----EKIWKVDDHVGIAYAG 81          
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Match: A0A7J3XWC6_9ARCH (Proteasome subunit alpha n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7J3XWC6_9ARCH)

HSP 1 Score: 54.7 bits (130), Expect = 3.390e-7
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    4 GRMFQVEYAMEATRRGRTVVGV-CGDGCVALVTRDPPQPQPQPSCRAVKDRGVWEVDCHVGVAASG 198
            GR+FQVEYA+EA RRG T +GV C +G V  V +    P   PS        +W++D H+GVA +G
Sbjct:   20 GRLFQVEYALEAVRRGWTTLGVRCPEGVVLGVEKKKVVPLVDPSSM----EKIWKIDEHIGVAYAG 81          
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Match: A0A226EMH8_FOLCA (Proteasome subunit alpha type n=2 Tax=Entomobryomorpha TaxID=730330 RepID=A0A226EMH8_FOLCA)

HSP 1 Score: 54.7 bits (130), Expect = 3.450e-7
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 QGRMFQVEYAMEATRRGRTVVGVC-GDGCVALVTRDPPQPQPQPSCRAVKDRGVWEVDCHVGVAASG 198
            +GR+FQVEYA+EA + G TV+G+C  +G V +V +    P  +PS        + EVD H+GVA SG
Sbjct:   18 EGRIFQVEYAIEAIKLGSTVIGICTSEGVVLVVEKRITSPLMEPSTI----EKIAEVDKHIGVACSG 80          
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Match: A0A7J2J669_9EURY (Proteasome subunit alpha n=2 Tax=Euryarchaeota TaxID=28890 RepID=A0A7J2J669_9EURY)

HSP 1 Score: 54.7 bits (130), Expect = 3.450e-7
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    4 GRMFQVEYAMEATRRGRTVVGV-CGDGCVALVTRDPPQPQPQPSCRAVKDRGV---WEVDCHVGVAASG 198
            GR+FQV+YA EA +RG+T +G+ C DG V LV R       + + R ++ R +   +++D H+G A SG
Sbjct:   21 GRLFQVQYAQEAVKRGKTAIGIKCEDGIVLLVER-------KVTSRLIEPRSIEKIFQIDDHIGAATSG 82          
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Match: A0A662J627_9CREN (Proteasome subunit alpha n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662J627_9CREN)

HSP 1 Score: 54.7 bits (130), Expect = 3.480e-7
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 QGRMFQVEYAMEATRRGRTVVGV-CGDGCVALVTRDPPQPQPQPSCRAVKDRGVWEVDCHVGVAASG 198
            +GR++QVEYA+EA +RG T +G+ C DG V  V +    P   P         +W++D HVG+A +G
Sbjct:   19 EGRLYQVEYALEAVKRGWTTLGIKCKDGVVVAVEKKRISPLVDPDTM----EKIWKIDDHVGIAYAG 81          
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Match: A0A151BA35_BATXB (Proteasome subunit alpha n=3 Tax=unclassified Candidatus Bathyarchaeota TaxID=1700837 RepID=A0A151BA35_BATXB)

HSP 1 Score: 54.3 bits (129), Expect = 4.630e-7
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 QGRMFQVEYAMEATRRGRTVVGVCGDGCVALVTRDPPQPQPQPSCRAVKDRGVW---EVDCHVGVAASG 198
            +GR++QVEYA+EA +RG ++VG+    C  L   +      +P  R + D   W   ++D HVGVA +G
Sbjct:   18 EGRLYQVEYAVEAVKRGASIVGLACKSCTVLAAEE------RPPSRLLDDNFTWKIFQIDDHVGVAIAG 80          
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Match: PSA_METPE (Proteasome subunit alpha n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) TaxID=521011 RepID=PSA_METPE)

HSP 1 Score: 53.9 bits (128), Expect = 6.580e-7
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    4 GRMFQVEYAMEATRRGRTVVGV-CGDGCVALVTRDPPQPQPQPSCRAVKDRGVWEVDCHVGVAASG 198
            GR++QVEYA EA +RG T VG+ C DG V LV +       +PS        ++++D H+GVA+SG
Sbjct:   20 GRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPS----SIEKIFKIDNHIGVASSG 81          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121730.4462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAG5_9PHAE7.900e-2470.15PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A662J1B8_9CREN1.270e-746.97Proteasome subunit alpha n=2 Tax=Thermoprotei arch... [more]
A0A7C4JD40_9ARCH2.510e-741.79Proteasome subunit alpha n=3 Tax=TACK group TaxID=... [more]
A0A7C2WB74_9ARCH2.510e-741.79Proteasome subunit alpha n=1 Tax=Candidatus Bathya... [more]
A0A7J3XWC6_9ARCH3.390e-745.45Proteasome subunit alpha n=1 Tax=Candidatus Bathya... [more]
A0A226EMH8_FOLCA3.450e-744.78Proteasome subunit alpha type n=2 Tax=Entomobryomo... [more]
A0A7J2J669_9EURY3.450e-740.58Proteasome subunit alpha n=2 Tax=Euryarchaeota Tax... [more]
A0A662J627_9CREN3.480e-740.30Proteasome subunit alpha n=1 Tax=Thermoprotei arch... [more]
A0A151BA35_BATXB4.630e-737.68Proteasome subunit alpha n=3 Tax=unclassified Cand... [more]
PSA_METPE6.580e-743.94Proteasome subunit alpha n=1 Tax=Methanosphaerula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121730contigM-pyrifera_M_contig121730:214..414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size192
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.4003577-UTR-M-pyrifera_M_contig121730:213..2221622815736.4003577-UTR-M-pyrifera_M_contig121730:213..222Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121730 214..222 +
1692277545.3189383-UTR-M-pyrifera_M_contig121730:213..2221692277545.3189383-UTR-M-pyrifera_M_contig121730:213..222Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121730 214..222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.4170268-CDS-M-pyrifera_M_contig121730:222..4141622815736.4170268-CDS-M-pyrifera_M_contig121730:222..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121730 223..414 +
1692277545.3297937-CDS-M-pyrifera_M_contig121730:222..4141692277545.3297937-CDS-M-pyrifera_M_contig121730:222..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121730 223..414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121730.4462.1prot_M-pyrifera_M_contig121730.4462.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121730 223..414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121730.4462.1

>prot_M-pyrifera_M_contig121730.4462.1 ID=prot_M-pyrifera_M_contig121730.4462.1|Name=mRNA_M-pyrifera_M_contig121730.4462.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
MFQVEYAMEATRRGRTVVGVCGDGCVALVTRDPPQPQPQPSCRAVKDRGV
WEVDCHVGVAASG*
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mRNA from alignment at M-pyrifera_M_contig121730:214..414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121730.4462.1 ID=mRNA_M-pyrifera_M_contig121730.4462.1|Name=mRNA_M-pyrifera_M_contig121730.4462.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig121730:214..414+ (Macrocystis pyrifera P11B4 male)
CAGGGGAGGATGTTTCAGGTTGAGTACGCGATGGAGGCGACCCGGCGAGG CAGAACGGTCGTGGGCGTCTGCGGCGACGGCTGCGTGGCGCTGGTGACGC GAGACCCGCCGCAGCCGCAGCCGCAGCCCTCGTGCCGGGCGGTGAAAGAC AGGGGTGTGTGGGAGGTGGACTGCCACGTCGGCGTTGCCGCTTCTGGGTG A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121730:214..414+

>mRNA_M-pyrifera_M_contig121730.4462.1 ID=mRNA_M-pyrifera_M_contig121730.4462.1|Name=mRNA_M-pyrifera_M_contig121730.4462.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig121730:214..414+ (Macrocystis pyrifera P11B4 male)
ATGTTTCAGGTTGAGTACGCGATGGAGGCGACCCGGCGAGGCAGAACGGT
CGTGGGCGTCTGCGGCGACGGCTGCGTGGCGCTGGTGACGCGAGACCCGC
CGCAGCCGCAGCCGCAGCCCTCGTGCCGGGCGGTGAAAGACAGGGGTGTG
TGGGAGGTGGACTGCCACGTCGGCGTTGCCGCTTCTGGGTGAATGTTTCA
GGTTGAGTACGCGATGGAGGCGACCCGGCGAGGCAGAACGGTCGTGGGCG
TCTGCGGCGACGGCTGCGTGGCGCTGGTGACGCGAGACCCGCCGCAGCCG
CAGCCGCAGCCCTCGTGCCGGGCGGTGAAAGACAGGGGTGTGTGGGAGGT
GGACTGCCACGTCGGCGTTGCCGCTTCTGGGTGA
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