mRNA_M-pyrifera_M_contig121667.4458.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121667.4458.1
Unique NamemRNA_M-pyrifera_M_contig121667.4458.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Match: A0A5A8BZT3_CAFRO (Brix domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8BZT3_CAFRO)

HSP 1 Score: 67.8 bits (164), Expect = 1.340e-11
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    4 SAVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHAEQAALKKARAAQQKANVLKK 210
            S ++L+E+GPR++L LLR   GL +GEVL+HS V K+A+E   LR+ HAE+ AL+K R AQQ+ANV +K
Sbjct:  353 SVLKLSEVGPRLSLGLLRAESGLFAGEVLYHSLVRKTAAEAVLLRKAHAEKDALRKMRTAQQEANVARK 421          
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Match: UPI000D1C84A0 (peter Pan-like protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C84A0)

HSP 1 Score: 64.3 bits (155), Expect = 2.210e-10
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    4 SAVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHAEQAALKKARAAQQKANVLKK 210
            SAV+L E+GPRMTL+L++V +GL SG V+FH  V K+A E AEL+    ++ AL+K R A+Q+ANV +K
Sbjct:  263 SAVKLHEIGPRMTLQLVKVEEGLCSGAVMFHEYVKKTAEEVAELKETFEKREALRKQRKAEQEANVRRK 331          
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Match: A0A3P3YDH3_PLABS (Brix domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YDH3_PLABS)

HSP 1 Score: 63.2 bits (152), Expect = 4.820e-10
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    4 SAVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHAEQAALKKARAAQQKANVLKK 210
            SA+RL E+GPRMT++LL++ +GL SG V+++  V K+  E AE+RR +AE+ A K AR A Q+ANV +K
Sbjct:  217 SAIRLQEIGPRMTMQLLKIEEGLCSGPVIYNRFVNKTPEEIAEMRRAYAEKQATKAARRAAQEANVKRK 285          
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Match: B6K2F8_SCHJY (RNA-binding protein n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K2F8_SCHJY)

HSP 1 Score: 63.2 bits (152), Expect = 5.450e-10
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    7 AVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHAEQAALKKARAAQQKANVLKK 210
            AV+L E+GPRMTL L++V +G+  G+VL+H  V K+  E AEL ++H E+ ALK+ R  +Q ANV +K
Sbjct:  286 AVKLVEVGPRMTLDLVKVTEGVSDGKVLYHKLVQKTEKESAELEKLHVERRALKEKRKREQAANVERK 353          
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Match: A0A0D1CNL4_USTMA (Chromosome 10, whole genome shotgun sequence n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1CNL4_USTMA)

HSP 1 Score: 62.4 bits (150), Expect = 1.060e-9
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    7 AVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHAEQAALKKARAAQQKANVLKK 210
            AVRL E+GPRM L+L+++ +G + G VLFH  V K+A EEA+L+R H E+  L+K R  QQ+ NV +K
Sbjct:  291 AVRLREIGPRMELKLVKIEEGCNQGAVLFHEYVKKTAHEEAQLQREHMEKLKLQKQRREQQQENVERK 358          
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Match: A0A1E4TFB6_9ASCO (Brix domain-containing protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TFB6_9ASCO)

HSP 1 Score: 60.5 bits (145), Expect = 4.950e-9
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 RSAVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHAEQAALKKARAAQQKANV 201
            + A+RL ELGPRM LRL+++ +G+  G+VL+HS + KSA E   L + HAE+  LK  R A+Q+ NV
Sbjct:  270 KKALRLTELGPRMRLRLMKIEEGVCDGKVLYHSLITKSAEEIQALDKAHAEKEQLKARRRAEQEKNV 336          
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Match: A0A7R8XDF2_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XDF2_9CRUS)

HSP 1 Score: 60.5 bits (145), Expect = 4.990e-9
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    4 SAVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHAE 153
            SAVRL E+GPR+TL+L++V  GL +GEVLFH+TVVKSA +   +RR+  E
Sbjct:  263 SAVRLTEIGPRITLQLMKVESGLLTGEVLFHATVVKSAEDRERIRRLRDE 312          
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Match: L8GZH9_ACACA (Brix domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZH9_ACACA)

HSP 1 Score: 60.5 bits (145), Expect = 5.050e-9
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    4 SAVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHAEQAALKKARAAQQKANVLKK 210
            SAVRL ELGPR+TL L++V +G   G+VL+H  V K+A EEAEL      Q  LK+AR  QQ  N+ KK
Sbjct:  278 SAVRLQELGPRLTLSLVKVQEGFCDGQVLYHQFVTKTAEEEAELEARVERQRELKEARRQQQLLNLAKK 346          
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Match: R7TU31_CAPTE (Brix domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TU31_CAPTE)

HSP 1 Score: 58.9 bits (141), Expect = 6.080e-9
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 RSAVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHAEQAALKKARAAQQKANVLKK 210
            +SA+RL+E+GPRM LRL+++  G++ GEVLFH  V KSA + A +++ H ++  LK  R   Q  NV +K
Sbjct:   77 KSAIRLSEIGPRMKLRLVKIEDGINKGEVLFHRYVEKSAEDLAAMKKAHIQKKELKHQRKLAQNKNVERK 146          
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Match: A0A0F7S0E4_9BASI (Brix domain-containing protein n=2 Tax=Sporisorium scitamineum TaxID=49012 RepID=A0A0F7S0E4_9BASI)

HSP 1 Score: 59.7 bits (143), Expect = 9.330e-9
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    7 AVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHAEQAALKKARAAQQKANVLKK 210
            AVRL E+GPRM L+L+++ +G + G VLFH  + KSA EE +L R H E+  L++ R  +Q+ NV +K
Sbjct:  287 AVRLREIGPRMELKLIKIEEGCNEGAVLFHEYIKKSAQEETQLHRDHVERKRLQEQRRLEQEQNVERK 354          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121667.4458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8BZT3_CAFRO1.340e-1155.07Brix domain-containing protein n=4 Tax=Sar TaxID=2... [more]
UPI000D1C84A02.210e-1053.62peter Pan-like protein n=2 Tax=Selaginella moellen... [more]
A0A3P3YDH3_PLABS4.820e-1052.17Brix domain-containing protein n=2 Tax=Plasmodioph... [more]
B6K2F8_SCHJY5.450e-1050.00RNA-binding protein n=1 Tax=Schizosaccharomyces ja... [more]
A0A0D1CNL4_USTMA1.060e-951.47Chromosome 10, whole genome shotgun sequence n=1 T... [more]
A0A1E4TFB6_9ASCO4.950e-949.25Brix domain-containing protein n=1 Tax=Tortispora ... [more]
A0A7R8XDF2_9CRUS4.990e-960.00Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
L8GZH9_ACACA5.050e-953.62Brix domain containing protein n=1 Tax=Acanthamoeb... [more]
R7TU31_CAPTE6.080e-945.71Brix domain-containing protein n=1 Tax=Capitella t... [more]
A0A0F7S0E4_9BASI9.330e-947.06Brix domain-containing protein n=2 Tax=Sporisorium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121667contigM-pyrifera_M_contig121667:324..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.7
Seed ortholog evalue2e-08
Seed eggNOG ortholog4897.EEB07339
Preferred nameSSF1
KEGG koko:K14859
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0000027,GO:0000463,GO:0000470,GO:0000746,GO:0000747,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008361,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032535,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0046483,GO:0051704,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090066,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.RNA-binding protein
EggNOG OGs38EE4@33154,3MCFY@451866,3NU9X@4751,3QK4Q@4890,KOG2963@1,KOG2963@2759
COG Functional cat.J
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.0876274-CDS-M-pyrifera_M_contig121667:323..5331622815736.0876274-CDS-M-pyrifera_M_contig121667:323..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121667 324..533 -
1692277545.1505172-CDS-M-pyrifera_M_contig121667:323..5331692277545.1505172-CDS-M-pyrifera_M_contig121667:323..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121667 324..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121667.4458.1prot_M-pyrifera_M_contig121667.4458.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121667 324..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121667.4458.1

>prot_M-pyrifera_M_contig121667.4458.1 ID=prot_M-pyrifera_M_contig121667.4458.1|Name=mRNA_M-pyrifera_M_contig121667.4458.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
RSAVRLAELGPRMTLRLLRVNKGLDSGEVLFHSTVVKSASEEAELRRIHA
EQAALKKARAAQQKANVLKK
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mRNA from alignment at M-pyrifera_M_contig121667:324..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121667.4458.1 ID=mRNA_M-pyrifera_M_contig121667.4458.1|Name=mRNA_M-pyrifera_M_contig121667.4458.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig121667:324..533- (Macrocystis pyrifera P11B4 male)
CGGTCGGCTGTGCGATTGGCCGAGCTGGGCCCCAGAATGACTTTGCGGCT TTTGCGCGTGAACAAAGGACTCGATTCTGGGGAGGTTCTCTTCCACTCCA CCGTCGTAAAATCCGCATCCGAGGAAGCAGAGCTCCGCAGAATCCACGCA GAGCAGGCAGCTCTCAAAAAGGCCCGCGCAGCGCAGCAAAAGGCGAACGT GCTCAAAAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121667:324..533-

>mRNA_M-pyrifera_M_contig121667.4458.1 ID=mRNA_M-pyrifera_M_contig121667.4458.1|Name=mRNA_M-pyrifera_M_contig121667.4458.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig121667:324..533- (Macrocystis pyrifera P11B4 male)
CGGTCGGCTGTGCGATTGGCCGAGCTGGGCCCCAGAATGACTTTGCGGCT
TTTGCGCGTGAACAAAGGACTCGATTCTGGGGAGGTTCTCTTCCACTCCA
CCGTCGTAAAATCCGCATCCGAGGAAGCAGAGCTCCGCAGAATCCACGCA
GAGCAGGCAGCTCTCAAAAAGGCCCGCGCAGCGCAGCAAAAGGCGAACGT
GCTCAAAAAACGGTCGGCTGTGCGATTGGCCGAGCTGGGCCCCAGAATGA
CTTTGCGGCTTTTGCGCGTGAACAAAGGACTCGATTCTGGGGAGGTTCTC
TTCCACTCCACCGTCGTAAAATCCGCATCCGAGGAAGCAGAGCTCCGCAG
AATCCACGCAGAGCAGGCAGCTCTCAAAAAGGCCCGCGCAGCGCAGCAAA
AGGCGAACGTGCTCAAAAAA
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