mRNA_M-pyrifera_M_contig121652.4454.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121652.4454.1
Unique NamemRNA_M-pyrifera_M_contig121652.4454.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121652.4454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121652contigM-pyrifera_M_contig121652:3..173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.9405668-CDS-M-pyrifera_M_contig121652:2..1731622815735.9405668-CDS-M-pyrifera_M_contig121652:2..173Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121652 3..173 +
1692277545.0837953-CDS-M-pyrifera_M_contig121652:2..1731692277545.0837953-CDS-M-pyrifera_M_contig121652:2..173Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121652 3..173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121652.4454.1prot_M-pyrifera_M_contig121652.4454.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121652 3..173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121652.4454.1

>prot_M-pyrifera_M_contig121652.4454.1 ID=prot_M-pyrifera_M_contig121652.4454.1|Name=mRNA_M-pyrifera_M_contig121652.4454.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
QPLPLPESLDTLIVARGYRCNFPPEIVDGFLKFIGAHPRGVNAPPERWPK
GNQSWAE
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mRNA from alignment at M-pyrifera_M_contig121652:3..173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121652.4454.1 ID=mRNA_M-pyrifera_M_contig121652.4454.1|Name=mRNA_M-pyrifera_M_contig121652.4454.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig121652:3..173+ (Macrocystis pyrifera P11B4 male)
CAGCCCCTTCCGCTGCCGGAGAGCCTGGACACACTAATCGTAGCCCGGGG
ATATCGGTGTAATTTTCCTCCCGAGATTGTGGATGGGTTTTTGAAGTTTA
TCGGAGCGCACCCTCGGGGCGTAAACGCACCGCCCGAACGCTGGCCGAAG
GGCAACCAATCGTGGGCAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121652:3..173+

>mRNA_M-pyrifera_M_contig121652.4454.1 ID=mRNA_M-pyrifera_M_contig121652.4454.1|Name=mRNA_M-pyrifera_M_contig121652.4454.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig121652:3..173+ (Macrocystis pyrifera P11B4 male)
CAGCCCCTTCCGCTGCCGGAGAGCCTGGACACACTAATCGTAGCCCGGGG
ATATCGGTGTAATTTTCCTCCCGAGATTGTGGATGGGTTTTTGAAGTTTA
TCGGAGCGCACCCTCGGGGCGTAAACGCACCGCCCGAACGCTGGCCGAAG
GGCAACCAATCGTGGGCAGAGCAGCCCCTTCCGCTGCCGGAGAGCCTGGA
CACACTAATCGTAGCCCGGGGATATCGGTGTAATTTTCCTCCCGAGATTG
TGGATGGGTTTTTGAAGTTTATCGGAGCGCACCCTCGGGGCGTAAACGCA
CCGCCCGAACGCTGGCCGAAGGGCAACCAATCGTGGGCAGAG
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