mRNA_M-pyrifera_M_contig121642.4450.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121642.4450.1
Unique NamemRNA_M-pyrifera_M_contig121642.4450.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Match: A0A2D6U8Q4_9ACTN (Uncharacterized protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U8Q4_9ACTN)

HSP 1 Score: 192 bits (487), Expect = 9.680e-61
Identity = 88/115 (76.52%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    1 PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGHPLTVREKPLVVHGRFEAGRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDDRTHVDWRQSFHARLGKAVPPSGPPPA 345
            PQP+GVAIRIEVPWDRAN PH WRLDLLDEDGHP+ + E+PLVVHGRFEAGRPAGL+ GTPLSVPLAI FP++PVTPG+SY WQLSIDD TH+DWRQ FH R     P  GPPP+
Sbjct:   45 PQPMGVAIRIEVPWDRANTPHQWRLDLLDEDGHPVMINEQPLVVHGRFEAGRPAGLQAGTPLSVPLAITFPSLPVTPGRSYAWQLSIDDSTHLDWRQRFHVRETPQRP-MGPPPS 158          
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Match: A0A6B1B1Q7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B1Q7_9ACTN)

HSP 1 Score: 185 bits (470), Expect = 5.170e-58
Identity = 87/114 (76.32%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    1 PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGHPLTVREKPLVVHGRFEAGRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDDRTHVDWRQSFHARLGKAV-PPSGPP 339
            PQP+GVAIRIEVPWDRANV H WR+DLLDEDGHPL + E+PLVV G FEAGRP GL+PGTPL VPLAINFP +PVTPGKSYTWQLSI+  TH DWRQSF  RL K    PS PP
Sbjct:   54 PQPMGVAIRIEVPWDRANVSHEWRIDLLDEDGHPLLIGERPLVVQGNFEAGRPVGLRPGTPLCVPLAINFPTIPVTPGKSYTWQLSINGSTHSDWRQSFFVRLPKQTGSPSTPP 167          
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Match: A0A3M2GJ80_ACTSX (Uncharacterized protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GJ80_ACTSX)

HSP 1 Score: 163 bits (412), Expect = 1.620e-49
Identity = 73/102 (71.57%), Postives = 86/102 (84.31%), Query Frame = 1
Query:    1 PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGHPLTVREKPLVVHGRFEAGRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDDRTHVDWRQSFHAR 306
            PQPL V IRIEVPWDRAN+ H W L+L+DEDG P+TV E+P+ V GRFEAGRPAGL+PGTPLSVP+A+NFP +PVT G+SYTWQL+ID  TH  WRQSF+ R
Sbjct:   43 PQPLAVVIRIEVPWDRANIAHRWHLELVDEDGAPVTVGERPVGVRGRFEAGRPAGLRPGTPLSVPVAVNFPTLPVTGGRSYTWQLAIDGVTHDTWRQSFYVR 144          
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Match: A0A6J6SHC0_9ZZZZ (Unannotated protein n=2 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6SHC0_9ZZZZ)

HSP 1 Score: 149 bits (375), Expect = 9.090e-44
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    1 PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGHPLTVREKPLVVHGRFEAGRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDDRTHVDWRQSFHARLG 312
            PQPL +A+ + VPWDRAN+ H W ++LLDEDGHP+   + P+ V GRFEAG+PAGL+PGTPL VPLAINF  +PV PG SY WQL I+DR   +WR  FH R G
Sbjct:   52 PQPLAIALLLSVPWDRANISHQWSIELLDEDGHPVPNAQDPVAVRGRFEAGQPAGLQPGTPLGVPLAINFATLPVKPGSSYIWQLLIEDRARPEWRVRFHVRAG 155          
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Match: A0A7X5WL73_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WL73_9ACTN)

HSP 1 Score: 132 bits (331), Expect = 2.970e-37
Identity = 66/113 (58.41%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGHPLTVREKPLVVHGRFEAGRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDDRTHVDWRQSFHARLGKAVPPSGPP 339
            PQPLGVAIRI+VPWDRAN PH WRLDLLDEDGHP+ +RE+PLVV GRFEAGRP                          SYTWQLSIDD T  DWRQ F  R  KA     PP
Sbjct:   38 PQPLGVAIRIQVPWDRANTPHQWRLDLLDEDGHPVMMREQPLVVRGRFEAGRPX-------------------------SYTWQLSIDDATRTDWRQGFLVRKAKATGTPSPP 125          
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Match: A0A520XXQ7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XXQ7_9ACTN)

HSP 1 Score: 130 bits (328), Expect = 9.860e-37
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGHPLTVREKPLVVHGRFEAGRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDDRTHVDWRQSFHAR 306
            PQ + VA+RI VPWD+ANV H W+LDL+DEDG P+ +  K + + G+FEAGRPAG+ PGT L VPL +NF A+P+  GK YTWQLSI+D T   W  +F  R
Sbjct:   44 PQNIAVAVRIAVPWDQANVKHQWKLDLIDEDGQPVAINGKSIAIAGQFEAGRPAGVAPGTALWVPLGLNFGAIPLPGGKRYTWQLSINDATAETWNATFAVR 145          
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Match: UPI001AA05F97 (hypothetical protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA05F97)

HSP 1 Score: 130 bits (326), Expect = 1.810e-36
Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 1
Query:    1 PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGHPLTVREKPLVVHGRFEAGRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDDRTHVDWRQSF 297
            PQPL VA+ I+VPWDRAN+ H W+L+LLDEDG P+   E P ++ G+FEAGRP G   GTPL VPL INF A+PV PG+ YTW+L+ID  +   W+ SF
Sbjct:   42 PQPLAVALLIKVPWDRANITHDWKLELLDEDGMPVMHNETPFLIGGQFEAGRPPGWPAGTPLPVPLGINFHALPVQPGRRYTWRLAIDGTSEPTWQASF 140          
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Match: A0A7V9P785_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9P785_9ACTN)

HSP 1 Score: 127 bits (318), Expect = 3.060e-35
Identity = 59/114 (51.75%), Postives = 73/114 (64.04%), Query Frame = 1
Query:    1 PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGH----PLTVREKPLVVHGRFEAGRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDDRTHVDWRQSFHARLGKAVPPS 330
            P P  +A+  EVPWDRAN+ H +RLDL+D DGH    P    E+ L++ G FEAGRP GLKPGTPL VP+AIN P  P+ PG  Y W+LS++     DWR  F  R    +PPS
Sbjct:   32 PAPFAIAVLFEVPWDRANMRHRFRLDLVDSDGHVVFVPTDEGEEALMIEGEFEAGRPPGLKPGTPLDVPIAINLPGPPIPPGGRYEWRLSVNGEGTADWRLPFSTRSEDELPPS 145          
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Match: A0A538E687_9ACTN (Uncharacterized protein n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538E687_9ACTN)

HSP 1 Score: 122 bits (305), Expect = 3.230e-33
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGHPLTVR----EKPLVVHGRFEAGRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDDRTHVDWRQSFHAR 306
            P P+ +AI+IEVPWD++N PH  RL+LLD DG P+ +     E+ + +   FE GRPAG+KPGTP+ +PLAIN P  P+  G  Y W+LSID RT  DWR +F  R
Sbjct:   41 PSPMALAIKIEVPWDQSNQPHVCRLELLDSDGQPVEMETPEGEREIFIEANFEVGRPAGVKPGTPIDLPLAINVPPFPLDAGGRYEWRLSIDGRTEPDWRVAFSTR 146          
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Match: A0A351EW02_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EW02_9ACTN)

HSP 1 Score: 116 bits (290), Expect = 2.620e-31
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGHPLTVREKPLVVHGRFEAGRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDD 267
            PQPL +AI + VPWDRAN+ H W+LDL+DEDG    + EKP+ V+GRFEAGRPAGL+ GTPL V LAIN  A+ + PG  Y++  +IDD
Sbjct:   30 PQPLALAIHVTVPWDRANISHEWKLDLVDEDGRAAMIGEKPVSVNGRFEAGRPAGLRAGTPLGVALAINLTALRLKPGVGYSFVFAIDD 118          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121642.4450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6U8Q4_9ACTN9.680e-6176.52Uncharacterized protein n=5 Tax=Acidimicrobiaceae ... [more]
A0A6B1B1Q7_9ACTN5.170e-5876.32Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3M2GJ80_ACTSX1.620e-4971.57Uncharacterized protein n=1 Tax=Actinomyces sp. Ta... [more]
A0A6J6SHC0_9ZZZZ9.090e-4461.54Unannotated protein n=2 Tax=freshwater metagenome ... [more]
A0A7X5WL73_9ACTN2.970e-3758.41Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A520XXQ7_9ACTN9.860e-3756.86Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
UPI001AA05F971.810e-3658.59hypothetical protein n=1 Tax=Rhabdothermincola sed... [more]
A0A7V9P785_9ACTN3.060e-3551.75Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A538E687_9ACTN3.230e-3351.89Uncharacterized protein n=2 Tax=Actinomycetia bact... [more]
A0A351EW02_9ACTN2.620e-3159.55Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121642contigM-pyrifera_M_contig121642:187..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score91.3
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog1122609.AUGT01000012_gene4416
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3FZ@1,2IGAC@201174,32YET@2
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.7558975-CDS-M-pyrifera_M_contig121642:186..5311622815735.7558975-CDS-M-pyrifera_M_contig121642:186..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121642 187..531 -
1692277545.0105605-CDS-M-pyrifera_M_contig121642:186..5311692277545.0105605-CDS-M-pyrifera_M_contig121642:186..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121642 187..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121642.4450.1prot_M-pyrifera_M_contig121642.4450.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121642 187..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121642.4450.1

>prot_M-pyrifera_M_contig121642.4450.1 ID=prot_M-pyrifera_M_contig121642.4450.1|Name=mRNA_M-pyrifera_M_contig121642.4450.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
PQPLGVAIRIEVPWDRANVPHTWRLDLLDEDGHPLTVREKPLVVHGRFEA
GRPAGLKPGTPLSVPLAINFPAVPVTPGKSYTWQLSIDDRTHVDWRQSFH
ARLGKAVPPSGPPPA
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mRNA from alignment at M-pyrifera_M_contig121642:187..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121642.4450.1 ID=mRNA_M-pyrifera_M_contig121642.4450.1|Name=mRNA_M-pyrifera_M_contig121642.4450.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig121642:187..531- (Macrocystis pyrifera P11B4 male)
CCGCAGCCGCTCGGCGTGGCCATCCGCATCGAGGTGCCGTGGGACCGCGC CAACGTGCCCCACACCTGGCGGCTCGATCTGCTCGACGAGGACGGCCATC CGCTGACCGTGCGCGAGAAGCCGCTCGTGGTCCACGGCCGCTTCGAGGCC GGCCGACCGGCCGGGCTCAAACCGGGCACCCCGCTGTCGGTCCCCCTCGC CATCAACTTCCCGGCGGTCCCGGTCACCCCGGGCAAGAGCTACACCTGGC AGCTCTCGATCGACGACCGCACCCATGTCGACTGGCGTCAGAGCTTCCAC GCCCGCCTCGGCAAGGCCGTCCCTCCGAGCGGCCCTCCCCCGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121642:187..531-

>mRNA_M-pyrifera_M_contig121642.4450.1 ID=mRNA_M-pyrifera_M_contig121642.4450.1|Name=mRNA_M-pyrifera_M_contig121642.4450.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig121642:187..531- (Macrocystis pyrifera P11B4 male)
CCGCAGCCGCTCGGCGTGGCCATCCGCATCGAGGTGCCGTGGGACCGCGC
CAACGTGCCCCACACCTGGCGGCTCGATCTGCTCGACGAGGACGGCCATC
CGCTGACCGTGCGCGAGAAGCCGCTCGTGGTCCACGGCCGCTTCGAGGCC
GGCCGACCGGCCGGGCTCAAACCGGGCACCCCGCTGTCGGTCCCCCTCGC
CATCAACTTCCCGGCGGTCCCGGTCACCCCGGGCAAGAGCTACACCTGGC
AGCTCTCGATCGACGACCGCACCCATGTCGACTGGCGTCAGAGCTTCCAC
GCCCGCCTCGGCAAGGCCGTCCCTCCGAGCGGCCCTCCCCCGGCCCCGCA
GCCGCTCGGCGTGGCCATCCGCATCGAGGTGCCGTGGGACCGCGCCAACG
TGCCCCACACCTGGCGGCTCGATCTGCTCGACGAGGACGGCCATCCGCTG
ACCGTGCGCGAGAAGCCGCTCGTGGTCCACGGCCGCTTCGAGGCCGGCCG
ACCGGCCGGGCTCAAACCGGGCACCCCGCTGTCGGTCCCCCTCGCCATCA
ACTTCCCGGCGGTCCCGGTCACCCCGGGCAAGAGCTACACCTGGCAGCTC
TCGATCGACGACCGCACCCATGTCGACTGGCGTCAGAGCTTCCACGCCCG
CCTCGGCAAGGCCGTCCCTCCGAGCGGCCCTCCCCCGGCC
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