mRNA_M-pyrifera_M_contig121641.4449.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121641.4449.1
Unique NamemRNA_M-pyrifera_M_contig121641.4449.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Match: A0A0G4HZU2_9ALVE (Cilia- and flagella-associated protein 36 n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HZU2_9ALVE)

HSP 1 Score: 83.2 bits (204), Expect = 3.620e-17
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  100 QLAYTEVHNAFTEFVEGQLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTFKAMMLRRNVELEAEAREALE 360
            + +YTE HN F + V+  L DHL+ +GVTP++F  IC N V    +     K + +QLLAVDDFL FK MM++RN++LE EAR A+E
Sbjct:   49 KFSYTECHNKFKKLVDDLLTDHLADLGVTPEQFGRICVNGV----KDERFHKILVQQLLAVDDFLCFKKMMVKRNLQLELEARNAIE 131          
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Match: A0A7S1G6Y0_9STRA (Cilia- and flagella-associated protein 36 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6Y0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.390e-17
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  100 QLAYTEVHNAFTEFVEGQLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTFKAMMLRRNVELEAEAREAL 357
            + AY+E+H+ F E V+  LE HL++IGV P++F EIC  A  R G    V + VF+Q++AVDDF+TFK +M +RN+ELE EA +AL
Sbjct:   52 KFAYSELHDKFKELVDTLLETHLTEIGVAPEDFVEICSQA--RDGRD--VNRMVFDQIMAVDDFMTFKKLMQKRNMELELEAVKAL 133          
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Match: A0A5D6XY03_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY03_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.580e-15
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query:  100 QLAYTEVHNAFTEFVEGQLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTFKAMMLRRNVELEAEAREAL 357
            +  YTE+H  F + VE  L   L++IG++P +FA+IC     RG  +S ++ +V  Q+LA+DDFLTFK +M++RN+ELE EA +AL
Sbjct:   49 KFVYTELHQQFRQVVEEVLGSSLAEIGISPSDFADIC----ERGRHSSDISMEVVHQVLAMDDFLTFKKLMIKRNLELELEAIKAL 130          
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Match: A0A2D4BMY6_PYTIN (Cilia- and flagella-associated protein 36 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMY6_PYTIN)

HSP 1 Score: 78.2 bits (191), Expect = 1.790e-14
Identity = 40/86 (46.51%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  100 QLAYTEVHNAFTEFVEGQLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTFKAMMLRRNVELEAEAREAL 357
            +  YT++H  F + VEG L D+L++IG+T  +FAEIC     RG  ++ ++ +V  Q+LA+DDFLTFK +M++RN+ELE EA +A+
Sbjct:   49 KFVYTDLHXQFRDVVEGVLCDNLAEIGLTAADFAEIC----ERGRYSTDISLEVVNQILAMDDFLTFKKLMVKRNLELELEAIKAM 130          
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Match: K3XC66_GLOUD (Cilia- and flagella-associated protein 36 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC66_GLOUD)

HSP 1 Score: 78.2 bits (191), Expect = 1.880e-14
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  100 QLAYTEVHNAFTEFVEGQLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTFKAMMLRRNVELEAEAREAL 357
            +  YT++H  F + VEG L   L++IG+T  +FAEIC     R    S ++ +V  Q+LA+DDFLTFK +M++RN+ELE EA +AL
Sbjct:   49 KFVYTDLHQQFRDVVEGVLGSSLAEIGITSSDFAEIC----ERSRSVSDISMEVVNQILAMDDFLTFKKLMVKRNLELELEAIKAL 130          
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Match: A0A2R5GFG4_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFG4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.340e-13
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  100 QLAYTEVHNAFTEFVEGQLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTFKAMMLRRNVELEAEA 345
            +L++T+ H+ F E VE  L  HL+ +G++ ++F E C  A  +G +A+ VA+++  QL+A DDFLTFKA+M +RN ELE EA
Sbjct:   42 KLSHTQAHSDFKELVERLLTQHLTDVGISAEDFYEACEIAY-KGEDATDVAQRIVSQLVACDDFLTFKAIMFKRNKELEMEA 122          
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Match: A0A7S2R9U0_9STRA (Cilia- and flagella-associated protein 36 (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R9U0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.640e-13
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  100 QLAYTEVHNAFTEFVEGQLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTFKAMMLRRNVELEAEA 345
            +L + + H  F   VE  L  HL+++G++PD+F E C  +  +  + S  A QV EQL+A DDF+TFK++M+RRN ELE EA
Sbjct:   61 KLTHMDAHQEFKALVERLLVQHLTEVGISPDDFYEACEQSYQKS-DNSDFATQVIEQLIACDDFMTFKSIMIRRNKELEMEA 141          
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Match: A0A8K1CJL2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJL2_PYTOL)

HSP 1 Score: 75.5 bits (184), Expect = 1.650e-13
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  109 YTEVHNAFTEFVEGQLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTFKAMMLRRNVELEAEAREAL 357
            YT++H  F E VE  L  +L++IG+T  +FAEIC  A T    AS ++ +V  Q+LA+DDF+TFK +M++RN+ELE EA +AL
Sbjct:   49 YTDLHAQFREVVETVLCSNLAEIGLTASDFAEICERART----ASDISMEVVNQILAMDDFVTFKKLMVKRNLELELEAIKAL 127          
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Match: A0A061RB83_9CHLO (Cilia- and flagella-associated protein 36 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RB83_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 2.990e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  100 QLAYTEVHNAFTEFVEGQLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTFKAMMLRRNVELEAEAREALEKAHVRK 378
            +L YT++H  F E V+G + + L +IGVTP++F E     V++  + S +   V   +L V+DFL FKAMM++RN+EL  +  E +E  H++K
Sbjct:   44 KLEYTKIHEDFKEIVDGLISEFLEEIGVTPEQFVE----TVSKNLDNSKINNFVINSILTVEDFLQFKAMMVKRNIELTNQVLEMIESEHLKK 132          
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Match: A0A7S4HFG3_9EUKA (Cilia- and flagella-associated protein 36 (Fragment) n=2 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HFG3_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 4.600e-13
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  100 QLAYTEVHNAFTEFVEGQLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTFKAMMLRRNVELEAEAREALE 360
            +LAY +++ AF E VE  +E HL+ +GV+ + FA  C          S V ++V EQ+LAVDDF++FK MM++RN+ELE E+ +AL+
Sbjct:   73 KLAYMDIYAAFKEMVESLMELHLNDMGVSAEHFAAACEKFSN-----SDVGREVLEQILAVDDFVSFKKMMVKRNMELELESLKALQ 154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121641.4449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4HZU2_9ALVE3.620e-1749.43Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A7S1G6Y0_9STRA4.390e-1751.16Cilia- and flagella-associated protein 36 (Fragmen... [more]
A0A5D6XY03_9STRA7.580e-1546.51Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A2D4BMY6_PYTIN1.790e-1446.51Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
K3XC66_GLOUD1.880e-1446.51Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A2R5GFG4_9STRA1.340e-1346.34Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A7S2R9U0_9STRA1.640e-1345.12Cilia- and flagella-associated protein 36 (Fragmen... [more]
A0A8K1CJL2_PYTOL1.650e-1349.40Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A061RB83_9CHLO2.990e-1339.78Cilia- and flagella-associated protein 36 (Fragmen... [more]
A0A7S4HFG3_9EUKA4.600e-1344.83Cilia- and flagella-associated protein 36 (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121641contigM-pyrifera_M_contig121641:106..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue8.1e-13
Seed eggNOG ortholog65071.PYU1_T014815
Preferred nameCFAP36
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035869,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0047485,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0097546,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.The ARF-like 2 binding protein BART
EggNOG OGs1MITE@121069,KOG4511@1,KOG4511@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.7265851-CDS-M-pyrifera_M_contig121641:105..4831622815735.7265851-CDS-M-pyrifera_M_contig121641:105..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121641 106..483 +
1692277544.9988406-CDS-M-pyrifera_M_contig121641:105..4831692277544.9988406-CDS-M-pyrifera_M_contig121641:105..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121641 106..483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121641.4449.1prot_M-pyrifera_M_contig121641.4449.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121641 106..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121641.4449.1

>prot_M-pyrifera_M_contig121641.4449.1 ID=prot_M-pyrifera_M_contig121641.4449.1|Name=mRNA_M-pyrifera_M_contig121641.4449.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
LEYGCCLCAIPIKPVPIVFLPHCFRCFFLFFALQLAYTEVHNAFTEFVEG
QLEDHLSQIGVTPDEFAEICGNAVTRGGEASVVAKQVFEQLLAVDDFLTF
KAMMLRRNVELEAEAREALEKAHVRK
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mRNA from alignment at M-pyrifera_M_contig121641:106..483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121641.4449.1 ID=mRNA_M-pyrifera_M_contig121641.4449.1|Name=mRNA_M-pyrifera_M_contig121641.4449.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig121641:106..483+ (Macrocystis pyrifera P11B4 male)
TTGGAGTATGGGTGTTGTTTGTGTGCAATACCGATCAAACCTGTCCCAAT CGTTTTTTTGCCTCATTGTTTCCGGTGTTTCTTTCTTTTTTTCGCGCTGC AGTTGGCGTACACTGAGGTGCACAACGCGTTCACGGAGTTTGTGGAGGGT CAGTTGGAGGACCACCTGAGCCAGATTGGGGTGACGCCAGATGAGTTTGC CGAGATTTGCGGGAATGCCGTGACGCGTGGCGGAGAGGCGAGCGTGGTGG CCAAGCAGGTGTTCGAGCAGCTGCTTGCGGTGGACGACTTCCTGACCTTC AAGGCCATGATGCTGCGCCGCAACGTGGAACTGGAGGCAGAGGCCCGCGA AGCATTGGAGAAGGCGCACGTGCGAAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121641:106..483+

>mRNA_M-pyrifera_M_contig121641.4449.1 ID=mRNA_M-pyrifera_M_contig121641.4449.1|Name=mRNA_M-pyrifera_M_contig121641.4449.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig121641:106..483+ (Macrocystis pyrifera P11B4 male)
TTGGAGTATGGGTGTTGTTTGTGTGCAATACCGATCAAACCTGTCCCAAT
CGTTTTTTTGCCTCATTGTTTCCGGTGTTTCTTTCTTTTTTTCGCGCTGC
AGTTGGCGTACACTGAGGTGCACAACGCGTTCACGGAGTTTGTGGAGGGT
CAGTTGGAGGACCACCTGAGCCAGATTGGGGTGACGCCAGATGAGTTTGC
CGAGATTTGCGGGAATGCCGTGACGCGTGGCGGAGAGGCGAGCGTGGTGG
CCAAGCAGGTGTTCGAGCAGCTGCTTGCGGTGGACGACTTCCTGACCTTC
AAGGCCATGATGCTGCGCCGCAACGTGGAACTGGAGGCAGAGGCCCGCGA
AGCATTGGAGAAGGCGCACGTGCGAAAGTTGGAGTATGGGTGTTGTTTGT
GTGCAATACCGATCAAACCTGTCCCAATCGTTTTTTTGCCTCATTGTTTC
CGGTGTTTCTTTCTTTTTTTCGCGCTGCAGTTGGCGTACACTGAGGTGCA
CAACGCGTTCACGGAGTTTGTGGAGGGTCAGTTGGAGGACCACCTGAGCC
AGATTGGGGTGACGCCAGATGAGTTTGCCGAGATTTGCGGGAATGCCGTG
ACGCGTGGCGGAGAGGCGAGCGTGGTGGCCAAGCAGGTGTTCGAGCAGCT
GCTTGCGGTGGACGACTTCCTGACCTTCAAGGCCATGATGCTGCGCCGCA
ACGTGGAACTGGAGGCAGAGGCCCGCGAAGCATTGGAGAAGGCGCACGTG
CGAAAG
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