mRNA_M-pyrifera_M_contig12164.4448.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12164.4448.1
Unique NamemRNA_M-pyrifera_M_contig12164.4448.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Match: A0A6H5L4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H1_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.110e-18
Identity = 41/58 (70.69%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   99 QEGEAVKENTGRWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRTHARKHFQKL 272
            +EG  VKENTGRWT +E  LFLRGL+LHG+ WKKIASL++TRTV+Q RTHA+K+FQK+
Sbjct:  565 EEGGPVKENTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKI 622
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BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Match: A0A835Z7M4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.610e-17
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 3 
Query:  120 ENTGRWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRTHARKHFQKL 272
            +NTGRWT  E  LFL+GLD HG+ WKKIASL++TRTV+Q RTHA+K+FQKL
Sbjct:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKL 51
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BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Match: W7TWM0_9STRA (SANT/Myb domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWM0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.140e-16
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:   99 QEGEAVKENTGRWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRTHARKHFQKL 272
            Q GE  +ENTGRWT EE  LFL+GL++HG+ WKKIA L++TRTV+Q RTHA+K+FQKL
Sbjct:   91 QLGETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKL 148
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BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Match: A0A7S2WSS8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSS8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.350e-16
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:  114 VKENTGRWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRTHARKHFQKL 272
            VKENTGRWT EE N+FL GL LHG+ WK+IA +++TRTV+Q RTHA+K+FQKL
Sbjct:  129 VKENTGRWTMEEHNMFLEGLKLHGKGWKQIAQMIKTRTVVQIRTHAQKYFQKL 181
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BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Match: A0A448YYM3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYM3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.880e-16
Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = 3 
Query:  120 ENTGRWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRTHARKHFQKL 272
            ENTGRWT EE NLFL+GL+LHG+ WKKIA L+++RTV+Q RTHA+K+FQKL
Sbjct:  104 ENTGRWTAEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKL 154
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BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Match: A0A7S3LKU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LKU2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.270e-16
Identity = 39/81 (48.15%), Postives = 59/81 (72.84%), Query Frame = 3 
Query:   30 GGRGSRQGFPNNSAGGFHVGVEMQEGEAVKENTGRWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRTHARKHFQKL 272
            GG+  ++G   NS G     +E  E    +ENTGRWTK E + F++GLD++G++WKKIA+++ TRT++Q RTHA+K+FQK+
Sbjct:   60 GGKPKQKGTFRNSTG--ITMIEAAE-NGNRENTGRWTKAEHDRFVKGLDVYGKEWKKIAAMIETRTIVQIRTHAQKYFQKI 137
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BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Match: A0A1E7FR15_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR15_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.270e-16
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 3 
Query:  132 RWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRTHARKHFQKL 272
            RWT EE NLFL+GL+LHG+ WKKIA L+++RTV+Q RTHA+K+FQKL
Sbjct:    1 RWTSEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKL 47
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BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Match: A0A6U4FI15_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FI15_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.380e-16
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  117 KENTGRWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRTHARKHFQKL 272
            KENTGRW+ EE  LFL+GL++HG+ WKKIA L++TRTV+Q RTHA+K+FQKL
Sbjct:   28 KENTGRWSYEEHRLFLKGLEMHGKGWKKIAELIKTRTVVQIRTHAQKYFQKL 79
[Close]
BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Match: D7G656_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G656_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 8.160e-16
Identity = 36/51 (70.59%), Postives = 46/51 (90.20%), Query Frame = 3 
Query:  120 ENTGRWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRTHARKHFQKL 272
            +NTGRWT +E  LFLRGL+LHG+ WKKIASL++TRTV+Q RTHA+K+FQK+
Sbjct:    4 KNTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKI 54
[Close]
BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Match: UPI0007116198 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007116198)

HSP 1 Score: 80.5 bits (197), Expect = 9.610e-16
Identity = 37/61 (60.66%), Postives = 53/61 (86.89%), Query Frame = 3 
Query:   87 GVEMQEGEAVKENTGRWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRTHARKHFQK 269
            G+E+Q+GEA   N GRWT +E +LFL+GLDL+G+DW+KI+++V TRT++Q RTHA+K+FQK
Sbjct:   74 GIEVQQGEAGN-NIGRWTAQEHSLFLKGLDLYGKDWRKISTIVPTRTLIQIRTHAQKYFQK 133
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12164.4448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4H1_9PHAE1.110e-1870.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7M4_9STRA2.610e-1770.59Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
W7TWM0_9STRA1.140e-1667.24SANT/Myb domain protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2WSS8_9STRA1.350e-1669.81Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A448YYM3_9STRA2.880e-1672.55Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3LKU2_9STRA4.270e-1648.15Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A1E7FR15_9STRA6.270e-1670.21Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A6U4FI15_9STRA6.380e-1669.23Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
D7G656_ECTSI8.160e-1670.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00071161989.610e-1660.66hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12164contigM-pyrifera_M_contig12164:6635..7544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue7.7e-14
Seed eggNOG ortholog2880.D7G656
KEGG koko:K03797,ko:K09391
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ubiquitin modification-dependent histone binding
EggNOG OGsKOG0724@1,KOG0724@2759
EC3.4.21.102
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03000
Exons2
Model size272
Cds size177
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12164.4448.1prot_M-pyrifera_M_contig12164.4448.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12164 6635..7449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.662843-CDS-M-pyrifera_M_contig12164:6634..67841622815735.662843-CDS-M-pyrifera_M_contig12164:6634..6784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12164 6635..6784 -
1692277544.963795-CDS-M-pyrifera_M_contig12164:6634..67841692277544.963795-CDS-M-pyrifera_M_contig12164:6634..6784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12164 6635..6784 -
1622815735.6772316-CDS-M-pyrifera_M_contig12164:7422..74491622815735.6772316-CDS-M-pyrifera_M_contig12164:7422..7449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12164 7423..7449 -
1692277544.9754016-CDS-M-pyrifera_M_contig12164:7422..74491692277544.9754016-CDS-M-pyrifera_M_contig12164:7422..7449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12164 7423..7449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.692303-UTR-M-pyrifera_M_contig12164:7449..75441622815735.692303-UTR-M-pyrifera_M_contig12164:7449..7544Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12164 7450..7544 -
1692277544.986249-UTR-M-pyrifera_M_contig12164:7449..75441692277544.986249-UTR-M-pyrifera_M_contig12164:7449..7544Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12164 7450..7544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12164.4448.1

>prot_M-pyrifera_M_contig12164.4448.1 ID=prot_M-pyrifera_M_contig12164.4448.1|Name=mRNA_M-pyrifera_M_contig12164.4448.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MQEGEAVKENTGRWTKEERNLFLRGLDLHGRDWKKIASLVRTRTVLQTRT
HARKHFQKL
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mRNA from alignment at M-pyrifera_M_contig12164:6635..7544-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12164.4448.1 ID=mRNA_M-pyrifera_M_contig12164.4448.1|Name=mRNA_M-pyrifera_M_contig12164.4448.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=910bp|location=Sequence derived from alignment at M-pyrifera_M_contig12164:6635..7544- (Macrocystis pyrifera P11B4 male)
TTTTACGCCTATTAATAGGACTCTGACGTGGAGGTCGAGGCTCGAGGCAG
GGCTTCCCGAACAACTCCGCCGGGGGTTTCCACGTCGGTGTGGAAATGCA
GGAGGGGGAGGCGGTGAAAGAGGTGAGTGCTTTCGAAAGGAGGGGAGCGC
CCGTGACACACTTTCGCGCACTTGAAATATATGTTTTTCGTGTCGGTTCC
CGTTGGAAGTGGTGTTGCGTGTTGCTGTCGTTTTTGCGTTGTTAGTGTTG
GTGGTGGTGTTGTTGGTAGCGATGTTGGGGGCGGTGTAGAGGGCAGTGTT
GTTGGTACTGTTGCTGGTGTTGGTTATGGCGGGAAGAGTTCTAAGACAGA
GGTTCACCCTGATTGTTCTGAGGCTCCTTACCTGAGGAGCTCCATAGCTC
GCCCGACAACTGACTTCAGCAAAAATCAAATTGCATCCCGACGAATAATC
CCCATGGCCCAAGTATGCAATGCAAGCACGTTATCTGTCGAAGCAATATT
GGCATTGCGACGATTTCGGTTTAAGGAGCCCCGTCATTCTGAAACCATGT
TAGCCGAAATGTGCTACCTCTAACGTAGAACGCGTCGCGGTGCTTTTAGT
TGTGTTGATGTCGCTGATGGCGTTGTAGGCGATTATATTTGGTGGTTTAG
GTATTACTCCCCCGTCCGCCCTCCCCCACCCAGCCCCTTCCACGTTGCCG
CGCACATGACATGACATGACATCATATGCATCTTTCTAAAAATAATTATT
ACCGGTACAGAACACGGGCCGGTGGACGAAGGAAGAGCGCAACCTGTTTC
TGCGGGGGCTGGACCTACACGGGAGGGACTGGAAAAAGATCGCGTCCCTC
GTCAGGACGCGCACGGTGTTGCAAACCCGGACCCACGCTCGGAAGCACTT
CCAGAAGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12164:6635..7544-

>mRNA_M-pyrifera_M_contig12164.4448.1 ID=mRNA_M-pyrifera_M_contig12164.4448.1|Name=mRNA_M-pyrifera_M_contig12164.4448.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig12164:6635..7544- (Macrocystis pyrifera P11B4 male)
ATGCAGGAGGGGGAGGCGGTGAAAGAGATGCAGGAGGGGGAGGCGGTGAA
AGAGAACACGGGCCGGTGGACGAAGGAAGAGCGCAACCTGTTTCTGCGGG
GGCTGGACCTACACGGGAGGGACTGGAAAAAGATCGCGTCCCTCGTCAGG
ACGCGCACGGTGTTGCAAACCCGGACCCACGCTCGGAAGCACTTCCAGAA
GCTCAACACGGGCCGGTGGACGAAGGAAGAGCGCAACCTGTTTCTGCGGG
GGCTGGACCTACACGGGAGGGACTGGAAAAAGATCGCGTCCCTCGTCAGG
ACGCGCACGGTGTTGCAAACCCGGACCCACGCTCGGAAGCACTTCCAGAA
GCTC
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