mRNA_M-pyrifera_M_contig12163.4445.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12163.4445.1
Unique NamemRNA_M-pyrifera_M_contig12163.4445.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Match: D7FTE3_ECTSI (Methylthioribose-1-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE3_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 5.400e-97
Identity = 161/197 (81.73%), Postives = 178/197 (90.36%), Query Frame = 1 
Query:    1 QVRGAPLIAIVAALGLAVEVSTEAGKKTTAEEASTMLHGKLDYLQTSRPTAVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRRQGGFAVEALLAEPSCKGKAHLSVLTHCNTGSLATAGFGTALGVIRALSEKGMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLMAQG 591
             VRGAPLIAIVAALGLAVE S+ A +  TA+EAS+MLH KLDYL+TSR TAVNLANAC ALKT IS EA+R+GST +ST+E FV  AE MLEED+AANRRQGG+AVEALL+EPSCKGKA LSVLTHCNTGSLATAGFGTALGVIRAL EKG+L +C+CTETRPYNQGARLTAYEFVA+GLPGTLIPDSAA+FLMAQG
Sbjct:   46 MVRGAPLIAIVAALGLAVEASSGATQNGTAQEASSMLHEKLDYLKTSRETAVNLANACDALKTTISGEAAREGSTWSSTVEAFVGAAEAMLEEDIAANRRQGGYAVEALLSEPSCKGKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLASCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQG 242
[Close]
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Match: A0A6H5JD08_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD08_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 3.950e-95
Identity = 161/200 (80.50%), Postives = 177/200 (88.50%), Query Frame = 1 
Query:    1 QVRGAPLIAIVAALGLAVEVSTEAGKKTTAEEASTMLHGKLDYLQTSRPTAVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRRQGGFAVEALLAEPSCKGKAHLSVLTHCNTGSLATAGFGTALGVIRALSEKGMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLMAQGIPT 600
             VRGAPLIAIVAALGLAVE  + A +  TA+EAS+MLH KLDYL+TSR TAVNLANAC ALKT IS EA+R+GST +ST+E FV  AE MLEEDVAANRRQGG+AVEAL  EPSCKGKA LSVLTHCNTGSLATAGFGTALGVIRAL EKG+L +C+CTETRPYNQGARLTAYEFVA+GLPGTLIPDSAA+FLMAQG+ T
Sbjct:   46 MVRGAPLIAIVAALGLAVEACSGATQNGTAQEASSMLHEKLDYLKTSRETAVNLANACDALKTTISGEAAREGSTWSSTVEAFVGAAEAMLEEDVAANRRQGGYAVEALQLEPSCKGKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLASCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGVAT 245
[Close]
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Match: A0A3N4M111_9PEZI (Methylthioribose-1-phosphate isomerase n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4M111_9PEZI)

HSP 1 Score: 190 bits (483), Expect = 7.730e-56
Identity = 113/195 (57.95%), Postives = 134/195 (68.72%), Query Frame = 1 
Query:    4 VRGAPLIAIVAALGLAVEVSTEAGKKT--TAEEASTMLHGKLDYLQTSRPTAVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRRQGGFAVEALLAEPSCKGKAHLSVLTHCNTGSLATAGFGTALGVIRALSEKGMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLM 582
            VRGAP IAIVAAL LA E+ T  GK +  TA      +   LDYL TSRPTAVNL+ A   LK A++ EA+R+GST  S ++++   AE ML+ DVA NR  G F  E LL   +  GK  +SVLTHCNTGSLATAG+GTALG+IR+L     L   FCTETRPYNQG+RLTAYE V EG+P TLI DS AA +M
Sbjct:   45 VRGAPAIAIVAALSLATELETLRGKLSEYTARGIQDYIEKALDYLNTSRPTAVNLSGAVTKLKAAVAKEAAREGSTAQSVVDVYQGGAEDMLDADVADNRNIGNFGAEWLLK--TIAGKEKISVLTHCNTGSLATAGYGTALGIIRSLWSSRSLVHAFCTETRPYNQGSRLTAYELVHEGIPATLITDSMAAAIM 237
[Close]
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Match: A0A0D1YRE4_9PEZI (Methylthioribose-1-phosphate isomerase n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D1YRE4_9PEZI)

HSP 1 Score: 189 bits (480), Expect = 2.120e-55
Identity = 107/194 (55.15%), Postives = 133/194 (68.56%), Query Frame = 1 
Query:    1 QVRGAPLIAIVAALGLAVEVSTEAGKKTTAEEASTMLHGKLDYLQTSRPTAVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRRQGGFAVEALLAEPSCKGKAHLSVLTHCNTGSLATAGFGTALGVIRALSEKGMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLM 582
            + RGAP IAIVAAL LAVE++ E    T  EE +  +  KL+YL TSRPTAVNLA+A + L+  +    S +G+TG S  + +V  AE MLE+DV  NR  G +  + +L          +S+LTHCNTGSLATAG+GTALGVIR+L EKG LK  FCTETRPYNQG+RLTAYE V + +P TL+ DS AA LM
Sbjct:   44 RTRGAPAIAIVAALSLAVELTHET-LSTIPEEVAAFIIEKLEYLVTSRPTAVNLADAARKLEAIVEEAKSAEGATGESVRDAYVAAAERMLEDDVKDNRGIGDYGAKWILEHTEAAQSGPVSILTHCNTGSLATAGYGTALGVIRSLHEKGALKQAFCTETRPYNQGSRLTAYELVHDAIPATLVTDSMAAALM 236
[Close]
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Match: A0A1S3TXD9_VIGRR (Methylthioribose-1-phosphate isomerase n=13 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=A0A1S3TXD9_VIGRR)

HSP 1 Score: 189 bits (479), Expect = 2.320e-55
Identity = 112/196 (57.14%), Postives = 135/196 (68.88%), Query Frame = 1 
Query:    4 VRGAPLIAIVAALGLAVEVSTEAGKKTTAEEASTMLHGKLDYLQTSRPTAVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRRQGGFAVEALLAEPSCKGKAHLSVLTHCNTGSLATAGFGTALGVIRALSEKGMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLMAQG 591
            VRGAP IAI AAL LAVEV    G   +A EA ++L  KL+YL +SRPTAVNL++A   LK  +S  A+   S G S  + F+  AE MLE+DVA+NR  G +    +  +    GK  LSVLTHCNTGSLATAG+GTALGVIRAL   G+L+  +CTETRP+NQG+RLTAYE V E +P TLI DSAAA LM  G
Sbjct:   54 VRGAPAIAIAAALSLAVEVFNLDGFNGSAGEAVSILQNKLEYLVSSRPTAVNLSDAAGKLKEVVS-NAAATTSEGRSVFQAFIEAAEVMLEDDVASNRAIGSYGASCIQQQT---GKQKLSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAAAALMKAG 245
[Close]
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Match: A0A1L9S793_9EURO (Methylthioribose-1-phosphate isomerase n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9S793_9EURO)

HSP 1 Score: 188 bits (477), Expect = 6.400e-55
Identity = 106/199 (53.27%), Postives = 139/199 (69.85%), Query Frame = 1 
Query:    1 QVRGAPLIAIVAALGLAVEVS---TEAGKKTTAEEASTMLHGKLDYLQTSRPTAVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRRQGGFAVEALLAEPSCKGKAHLSVLTHCNTGSLATAGFGTALGVIRALSEKGMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLMAQ 588
            QVRGAP IAIVAAL LA E+S   T+    T A E    + GKL YL TSRPTAVNL++AC+ L+ ++S EA+R  +TG S   +F+  AE+ML +D+  N+  G    E ++      G++  +VLTHCNTGSLAT+G+GTALGVIR+L+E   L+  FCTETRPYNQG+RLTA+E V + +P TLI DS AA L+A+
Sbjct:   44 QVRGAPAIAIVAALSLASELSKLLTDDAITTNAVEVQNFIVGKLHYLITSRPTAVNLSDACRKLEISVSGEANRHNATGQSVALVFIRTAESMLAQDLEDNKSIGNHGAEWIIKHALWSGESQATVLTHCNTGSLATSGYGTALGVIRSLAESDTLRHVFCTETRPYNQGSRLTAFELVHDHIPATLITDSMAAALLAK 242
[Close]
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Match: A0A6A6JX94_9PLEO (Methylthioribose-1-phosphate isomerase n=1 Tax=Westerdykella ornata TaxID=318751 RepID=A0A6A6JX94_9PLEO)

HSP 1 Score: 187 bits (476), Expect = 1.070e-54
Identity = 108/196 (55.10%), Postives = 136/196 (69.39%), Query Frame = 1 
Query:    1 QVRGAPLIAIVAALGLAVEVSTEAGKKTTAEEASTMLHGKLDYLQTSRPTAVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRRQGGFAVEALLAEPSCKGKAHLSVLTHCNTGSLATAGFGTALGVIRALSEKGMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLMAQ 588
            + RGAP IAIVAALGLAVE+ T       AEE +  +  KLDYL TSRPTAVNLA+A + L   +  E +R+G+TG S  +++VT AE ML +DV  N   G    + ++ +     +  +SVLTHCNTGSLATAG+GTALGVIR+L +KG LK  FC+ETRPYNQG+RLTAYE V + +P TLI DS AA L+ Q
Sbjct:   44 RTRGAPAIAIVAALGLAVEL-TNMKISPIAEEVAIFILEKLDYLVTSRPTAVNLADAARKLTRRVVDEKAREGATGESVRDVYVTAAEKMLVDDVRDNEAIGDHGAKWIVEKTEAGARGQVSVLTHCNTGSLATAGYGTALGVIRSLHKKGALKHAFCSETRPYNQGSRLTAYELVHDEIPATLITDSMAAALLRQ 238
[Close]
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Match: A0A250XGC9_9CHLO (Methylthioribose-1-phosphate isomerase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XGC9_9CHLO)

HSP 1 Score: 195 bits (496), Expect = 1.210e-54
Identity = 113/203 (55.67%), Postives = 136/203 (67.00%), Query Frame = 1 
Query:    4 VRGAPLIAIVAALGLAVEVSTEAGKKTT---AEEASTMLHGKLDYLQTSRPTAVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRRQGGFAVEALLAEPSCKGKA----HLSVLTHCNTGSLATAGFGTALGVIRALSEKGMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLMAQG 591
            VRGAP I +  AL LAV+++    + ++    +EA + +   LDYL TSRPTAVNLA++   LK   +  AS+ GST  S +E  V  AET LE D+AANR  G +  +ALL      GK      L VLTHCNTGSLATAGFGTALGVIRAL E+G L+  FCTETRPYNQGARLTA+E + +GLP TLI DSAAA LM  G
Sbjct:   45 VRGAPAIGVTGALALAVDLTNNKSRGSSFSSVQEAVSYIFETLDYLVTSRPTAVNLADSALKLKAVTNEAASKQGSTAVSVVEAVVAAAETFLEADIAANRAMGAYGAKALLEASQAAGKGLGSGRLRVLTHCNTGSLATAGFGTALGVIRALHEQGKLEHAFCTETRPYNQGARLTAFELLHDGLPSTLICDSAAASLMGSG 247
[Close]
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Match: A0A835YPH9_9STRA (Methylthioribose-1-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH9_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.340e-54
Identity = 113/203 (55.67%), Postives = 140/203 (68.97%), Query Frame = 1 
Query:    1 QVRGAPLIAIVAALGLAVEVST----EAGKKTTAEEASTMLHGKLDYLQTSRPTAVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRRQGGFAVEALLAEPSCKGKAH--LSVLTHCNTGSLATAGFGTALGVIRALSEKGMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLMAQG 591
            QVRGAPLIAIVA LGLA E++           +A  A  ++  +LD+L+TSRPTAVNL NAC A+   ++          AS     +  A  M+ +D+AAN+RQG F V+A+  + + K  A   +SVLTHCNTGSLA AGFGTALGVIRAL E+G+LKAC+ TETRPYNQGARLTA+E V + LPGTLI DS A+FLMAQG
Sbjct:   46 QVRGAPLIAIVAMLGLAAELTNCPPDNGADSESAAAAQELVLQRLDFLRTSRPTAVNLFNACDAMTALVAEAXXXXXXXXASVRSAVINAATAMVADDIAANKRQGRFGVQAIRQDCAEKLAAAGAVSVLTHCNTGSLACAGFGTALGVIRALHEEGLLKACYATETRPYNQGARLTAFEMVEDNLPGTLITDSMASFLMAQG 248
[Close]
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Match: D8TSQ7_VOLCA (Methylthioribose-1-phosphate isomerase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TSQ7_VOLCA)

HSP 1 Score: 184 bits (466), Expect = 4.120e-53
Identity = 109/202 (53.96%), Postives = 132/202 (65.35%), Query Frame = 1 
Query:    4 VRGAPLIAIVAALGLAVEVSTEAGKKT---TAEEASTMLHGKLDYLQTSRPTAVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRRQGGFAVEALLAEPSCKGKA---HLSVLTHCNTGSLATAGFGTALGVIRALSEKGMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLMAQG 591
            VRGAP I    AL +AVE+ T  G  T   + +EA+  ++  LDYL TSRPTAVNLA+A   LK A +  A+ D +T +S     +  AE    ED+A+N+  G     ALLA    +G+     L VLTHCNTGSLATAG+GTALGVIRAL E+G L+  FCTETRPYNQGARLTA+E   + LP TLI DSAAA LMA G
Sbjct:   52 VRGAPAIGCTGALAMAVELQTHKGAGTEFSSVKEATDYINSTLDYLVTSRPTAVNLADAANKLKAAAALAAAADAATPSSVCSAVMDAAEAYFVEDIASNKAMGATGAAALLAAAHARGRGVGGKLRVLTHCNTGSLATAGYGTALGVIRALHEQGTLEHAFCTETRPYNQGARLTAFELAHDQLPATLICDSAAAALMASG 253
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12163.4445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTE3_ECTSI5.400e-9781.73Methylthioribose-1-phosphate isomerase n=1 Tax=Ect... [more]
A0A6H5JD08_9PHAE3.950e-9580.50Reverse transcriptase domain-containing protein n=... [more]
A0A3N4M111_9PEZI7.730e-5657.95Methylthioribose-1-phosphate isomerase n=1 Tax=Ter... [more]
A0A0D1YRE4_9PEZI2.120e-5555.15Methylthioribose-1-phosphate isomerase n=1 Tax=Ver... [more]
A0A1S3TXD9_VIGRR2.320e-5557.14Methylthioribose-1-phosphate isomerase n=13 Tax=in... [more]
A0A1L9S793_9EURO6.400e-5553.27Methylthioribose-1-phosphate isomerase n=1 Tax=Pen... [more]
A0A6A6JX94_9PLEO1.070e-5455.10Methylthioribose-1-phosphate isomerase n=1 Tax=Wes... [more]
A0A250XGC9_9CHLO1.210e-5455.67Methylthioribose-1-phosphate isomerase n=1 Tax=Chl... [more]
A0A835YPH9_9STRA3.340e-5455.67Methylthioribose-1-phosphate isomerase n=1 Tax=Tri... [more]
D8TSQ7_VOLCA4.120e-5353.96Methylthioribose-1-phosphate isomerase n=1 Tax=Vol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12163contigM-pyrifera_M_contig12163:554..4412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue1.6e-82
Seed eggNOG ortholog2880.D7FTE3
Preferred nameMRI1
KEGG rclassRC00002,RC00078,RC01151
KEGG koko:K00899,ko:K03239,ko:K08963,ko:K20047
KEGG ReactionR04143,R04420
KEGG Pathwayko00270,ko01100,ko03013,map00270,map01100,map03013
KEGG ModuleM00034
Hectar predicted targeting categorysignal peptide
GOsGO:0000096,GO:0000097,GO:0000166,GO:0000302,GO:0001650,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005851,GO:0005911,GO:0006082,GO:0006412,GO:0006413,GO:0006518,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008135,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009066,GO:0009067,GO:0009086,GO:0009506,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010467,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017076,GO:0017144,GO:0019001,GO:0019509,GO:0019538,GO:0019752,GO:0030054,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042802,GO:0043043,GO:0043094,GO:0043102,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046394,GO:0046523,GO:0050896,GO:0051716,GO:0055044,GO:0070013,GO:0070887,GO:0071241,GO:0071248,GO:0071265,GO:0071267,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071704,GO:0071731,GO:0071732,GO:0097159,GO:0097366,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170
EggNOG free text desc.S-methyl-5-thioribose-1-phosphate isomerase activity
EggNOG OGsCOG0182@1,KOG1468@2759
EC2.7.1.100,5.3.1.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04131
Exons5
Model size609
Cds size609
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12163.4445.1prot_M-pyrifera_M_contig12163.4445.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12163 554..4412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.473236-CDS-M-pyrifera_M_contig12163:553..6641622815735.473236-CDS-M-pyrifera_M_contig12163:553..664Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12163 554..664 -
1692277544.8688276-CDS-M-pyrifera_M_contig12163:553..6641692277544.8688276-CDS-M-pyrifera_M_contig12163:553..664Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12163 554..664 -
1622815735.4889715-CDS-M-pyrifera_M_contig12163:1159..12691622815735.4889715-CDS-M-pyrifera_M_contig12163:1159..1269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12163 1160..1269 -
1692277544.8858643-CDS-M-pyrifera_M_contig12163:1159..12691692277544.8858643-CDS-M-pyrifera_M_contig12163:1159..1269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12163 1160..1269 -
1622815735.5089753-CDS-M-pyrifera_M_contig12163:2263..23471622815735.5089753-CDS-M-pyrifera_M_contig12163:2263..2347Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12163 2264..2347 -
1692277544.8952813-CDS-M-pyrifera_M_contig12163:2263..23471692277544.8952813-CDS-M-pyrifera_M_contig12163:2263..2347Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12163 2264..2347 -
1622815735.5215034-CDS-M-pyrifera_M_contig12163:3348..35331622815735.5215034-CDS-M-pyrifera_M_contig12163:3348..3533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12163 3349..3533 -
1692277544.9053185-CDS-M-pyrifera_M_contig12163:3348..35331692277544.9053185-CDS-M-pyrifera_M_contig12163:3348..3533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12163 3349..3533 -
1622815735.5350416-CDS-M-pyrifera_M_contig12163:4293..44121622815735.5350416-CDS-M-pyrifera_M_contig12163:4293..4412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12163 4294..4412 -
1692277544.9154015-CDS-M-pyrifera_M_contig12163:4293..44121692277544.9154015-CDS-M-pyrifera_M_contig12163:4293..4412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12163 4294..4412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12163.4445.1

>prot_M-pyrifera_M_contig12163.4445.1 ID=prot_M-pyrifera_M_contig12163.4445.1|Name=mRNA_M-pyrifera_M_contig12163.4445.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
QVRGAPLIAIVAALGLAVEVSTEAGKKTTAEEASTMLHGKLDYLQTSRPT
AVNLANACQALKTAISAEASRDGSTGASTIELFVTLAETMLEEDVAANRR
QGGFAVEALLAEPSCKGKAHLSVLTHCNTGSLATAGFGTALGVIRALSEK
GMLKACFCTETRPYNQGARLTAYEFVAEGLPGTLIPDSAAAFLMAQGIPT
AH*
back to top

mRNA from alignment at M-pyrifera_M_contig12163:554..4412-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12163.4445.1 ID=mRNA_M-pyrifera_M_contig12163.4445.1|Name=mRNA_M-pyrifera_M_contig12163.4445.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3859bp|location=Sequence derived from alignment at M-pyrifera_M_contig12163:554..4412- (Macrocystis pyrifera P11B4 male)
CAGGTACGGGGCGCCCCCCTGATCGCCATCGTTGCGGCTCTCGGCCTGGC
TGTCGAGGTGTCGACGGAGGCAGGGAAAAAAACGACGGCGGAGGAGGCCT
CAACGATGCTGCACGGGAAGTGAGAGACGGGCCGAGCCGAGACTCACCGA
GGGTAGACACCTTCTCTGGCGCTAGCTGGAAGCATGCGCGCTTGTGGCAC
GACCTCCTCATTCAGCATAGCATTCAGCATGGCCCGGCTCCCGCATGCCG
GACGAGGAGACCAGTAAATTAGCGAGAACAGCAGTATGTACGATGTGCTG
GCAGCCCACCGCTGAAACAGTCACGCATCTCGGACGGATCATCTACAGAT
GATCGATTTTCACTTCACGATCTAAACCTTTTGAGGCAGATTGATCATCT
ATAGCCGGCCTTGTATGAACTGGCTCATGTTGCCGGGTGGAACTCGTAAA
ATCTGCATGATTTACAGTAGCACGTATTCGCTGGGTTGCATCTGCCATAT
AAGGCATTTAAGGCATATATATCCTGCACAACCTTACACAACGGCAGGCG
GTGAGGAACTAGATCATCTACAGATAGATTATGATCTAGCTGTAGATGAT
TTGTCTAACGTTTGGAAGTATATCTTGGCGAAATGATTTAAAATGGGTGA
AATTCAGTGTCTCTCCCATCCTGCCACCCGGAAGGTTTACCGCGCAGGCA
TTTAGCGCTCTTTTTGGCAACCTCTGCCATACATGAAAAGAAAGCAAGCA
CGTAAAACACAGTACCGCGAACCCCTGCCGCCCTCTGCCCTCCCGCCTTC
TCCCTCGTCGCCCCCTCCTCCCCCCTCCGCCTTCCTCTTTTCCCCGTTTT
GGATTAAAACATTAAAATATCACCACAAGGCTGGACTATCTGCAGACATC
CCGACCGACGGCGGTGAACCTTGCCAACGCCTGCCAGGCGTTGAAAACCG
CGATTTCTGCTGAGGCGTCAAGGGACGGGAGCACGGGGGCTTCAACGATA
GAGCTTTTCGTCACCTTGGCCGAGACCATGCTTGAGGAGGACGTTGCTGC
TAACCGTCGGCAAGGTGATTGTGCTTTTTGTTAGGCAAGAATGAGTGTGC
ATGCATGCCCACGAGAGCGTGAGTTAGCAACCTTCAATGAAAATCGAAGA
GCAGCGGAAATGCTGGAGACTCTGCGCGAAAATAATGGAGCACGTACCGG
GGGGGAGAAGGGACGACACCTGTGAACACGGCATGTCCAGAAGATCACTG
AGGGGGGAAGAAAAATTGGATGATAAGAATGGGGGTTTCGGGCTACGAGT
TCAGTAGTTACAAACGCGCTTTATCACCGCGTAGCAACCGTTTCGGGCAG
AGGGCAAGTGCGTGCGCTCCAAGAAGTGACGCGGGGCGTGTGTTGTGCCT
GGGAAGCCTTTAAAAACGAAATTTGGCCGTGTTATCGGTACCTGTTGGTG
TGTGGTTGGTCGCAGTTGCCCAAATTTGACCGCCTTTCGACATGCACAGT
CGAAGGCAGCCACGGCACACGCAGTGCAGTGCCGGATGAAAAGTCGCTGT
GTGACATGAACTACAGTGCCTCGGGGCAGGGTTTCTACCAGACAAACATG
TTTTTTTGGCTGGCCTGGCGGGAGGCGTTATGTGTGGCAGCGGGGCTCCG
CTTGACAGTCGGTCTTCCCCTAGTGTTCCCTGACCTTCGGTTGTGAGGAC
GGTTACATGCATACCTCGGGCGGATCATGGTCTAGATCATCTAGATCTTT
TTAACTTGCCGTTATGATATCTTGTACAGGATCTGTGCATTATAGATTTG
ACCCAGAAAGCGTGTCCTAGGTCATGCAGGTTTAGGATACGGCTCCCGCC
CGGCAGCATGGGTTAGATCATACATATCATACAGATCAATAAGTTATCTT
ATCTGCGGTGAAATATCTAGATCATGAACTGGGAATCATCTGTAGATGAT
CTGTCCATGATCTGTCTGGGGTGTGGAAGAATAGAGCTTCGCCTCACATT
TCCCCTGGGCTTTTGCCTCCCGCGCCTTCTGTTTACGCACGATACGATCC
TTCAATGGTGTCAAGGGGGGTTCGCTGTCGAGGCTCTTCTGGCGGAGCCA
TCGTGCAAAGGGAAGGCGCACCTTTCAGTCCTCACGCACTGCAACACCGG
TGAGAAGCAAAGAAATAGGAGGCGGGGCCGGGGTGTGTACTCATGCCATG
CATGTCCGTAGTCGTATCAGCACGTGTAGACCCTCGCGTCCCTATCGTAG
AATGCCGGGACGGACCACGTCGGGTTTTACCGACCAGGAAGACATTGCTT
GCATCAGGCGCAAAGCGAAACGTGAGGTGTTGAGCAAGTCGAATAAAGGG
TGCTGCATCCTACTTAGAACCGCTTTTGAAGGCGGACGGGCCGGGGGGAT
GTACTGATTATCATGCATGGCCGTAGGTGTACAGCCATAGACCCTTGCGT
CCCTACTATGCCGGGACGGAGCACGTCGGGTTTTCACCGACCAGGCAGAA
ATCGCTAACACCAAGCGCGAAGCGCCGTGAGGCATTCGGCGAGTCGCATG
AAGGGTGAAAGGGTGACCTGCCTCTTACTACTGTAAGAACCGCTTGAAAG
ACGGTCTGGGGGGGGGGGGGGATAGAGCGGTAGACTCGCGAGGCGTCAAC
TCAAAAGGCGAAAGTGCAGTTTAGGGGTGGACCTAGATTCTCACGGCGGG
GGTGGGGGCAAAAGCTTGGAAACAGGAGGGGGGCGGCACGGTACGGGAGA
GAGAGGGAGAGCTACTGCAGGTTTGCTGCGTCCACTTCACCTTTGTCCGG
AGCGTACTTCTTTTGCCCTCCGGGGACCTTTTTGCTTTCAGGACGTTCCT
CGGGGTCTGTAAGAAGGGTTGCGGTGAACTTGAAAACCTATCGGGCAGTT
CGGGTGTTCGTCTAGAATATCCTTCGCCAAGGCCCTGCTTCGCTGCCATC
TTGAAGAAAACCCGCTCGGACACGTCGCTTCCTCGACATCGAATGCGCGG
TCGTTGCGAGAGTGAACCTGGCCTTCTAGCCAACCCACCGCACTGGAAAC
TGTAGTTTGGCCCTCTCACGATTCCTATCCCGATGTCTTCGTTGTGGTGC
CGTTTCTCTAATCCCGGCGTTGGGATTTTGTTTGCGTTCGCAGGGTCGTT
GGCGACGGCCGGCTTCGGGACGGCGTTGGGCGTGATCCGTGCTCTCTCGG
AGAAGGGGATGTTGAAGGCTTGTTTTTGCACGGAAACTAGGCCGTACAAC
CAGGTTCGGCGTGTGCGGTCGATCCCGTGTTTGTGCACGGTAAACACAGC
GATGATTTTGTGCGGCGGATGCCGTACGGCCAATGCCTTTTCTTGTACGG
CGAACGCCGTACGTATACGGTGAACGTTGTGCATGTACGGCGGAAAATGC
CGCGCGTGTACGGTGAACGTTGTGCATGTACGGGGGAAAGTGCCGTGCGG
CTACGGTGAACGCTGTACGCTTTCGGTGAATGCTGCGCGTATACGGTGGA
GGTCGGGGTTCCAGCTCGTCTTGTTTTTTGGTTTGAGCGATTTGCTGGAA
TCGTGTTTGGTGTCTTGAGAACGCGAGATGCGGTTGTGGCGAGAACCGAA
CTGAAAAGACGTCTCGTCTGATGGGGCACGCATGCCTTTTTTTGCGCTTT
GGGGCGAATGTTGAACGGCATTCGAAGAGCGTGATTGTGTTTACCTTCAG
TCCTGCGATACCCTTTTCTTGTTTGTATTGCTGTCTTTCTCTCACTAGGG
CGCTCGCCTTACAGCGTACGAGTTTGTCGCGGAGGGTCTGCCGGGCACCC
TCATCCCCGACTCGGCCGCCGCCTTCCTCATGGCGCAAGGTATACCAACA
GCACATTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12163:554..4412-

>mRNA_M-pyrifera_M_contig12163.4445.1 ID=mRNA_M-pyrifera_M_contig12163.4445.1|Name=mRNA_M-pyrifera_M_contig12163.4445.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig12163:554..4412- (Macrocystis pyrifera P11B4 male)
CAGGTACGGGGCGCCCCCCTGATCGCCATCGTTGCGGCTCTCGGCCTGGC
TGTCGAGGTGTCGACGGAGGCAGGGAAAAAAACGACGGCGGAGGAGGCCT
CAACGATGCTGCACGGGAACAGGTACGGGGCGCCCCCCTGATCGCCATCG
TTGCGGCTCTCGGCCTGGCTGTCGAGGTGTCGACGGAGGCAGGGAAAAAA
ACGACGGCGGAGGAGGCCTCAACGATGCTGCACGGGAAGCTGGACTATCT
GCAGACATCCCGACCGACGGCGGTGAACCTTGCCAACGCCTGCCAGGCGT
TGAAAACCGCGATTTCTGCTGAGGCGTCAAGGGACGGGAGCACGGGGGCT
TCAACGATAGAGCTTTTCGTCACCTTGGCCGAGACCATGCTTGAGGAGGA
CGTTGCTGCTAACCGTCGGCAAGGCTGGACTATCTGCAGACATCCCGACC
GACGGCGGTGAACCTTGCCAACGCCTGCCAGGCGTTGAAAACCGCGATTT
CTGCTGAGGCGTCAAGGGACGGGAGCACGGGGGCTTCAACGATAGAGCTT
TTCGTCACCTTGGCCGAGACCATGCTTGAGGAGGACGTTGCTGCTAACCG
TCGGCAAGGGGGGTTCGCTGTCGAGGCTCTTCTGGCGGAGCCATCGTGCA
AAGGGAAGGCGCACCTTTCAGTCCTCACGCACTGCAACACCGGGGGGTTC
GCTGTCGAGGCTCTTCTGGCGGAGCCATCGTGCAAAGGGAAGGCGCACCT
TTCAGTCCTCACGCACTGCAACACCGGGTCGTTGGCGACGGCCGGCTTCG
GGACGGCGTTGGGCGTGATCCGTGCTCTCTCGGAGAAGGGGATGTTGAAG
GCTTGTTTTTGCACGGAAACTAGGCCGTACAACCAGGGTCGTTGGCGACG
GCCGGCTTCGGGACGGCGTTGGGCGTGATCCGTGCTCTCTCGGAGAAGGG
GATGTTGAAGGCTTGTTTTTGCACGGAAACTAGGCCGTACAACCAGGGCG
CTCGCCTTACAGCGTACGAGTTTGTCGCGGAGGGTCTGCCGGGCACCCTC
ATCCCCGACTCGGCCGCCGCCTTCCTCATGGCGCAAGGTATACCAACAGC
ACATTAGGGCGCTCGCCTTACAGCGTACGAGTTTGTCGCGGAGGGTCTGC
CGGGCACCCTCATCCCCGACTCGGCCGCCGCCTTCCTCATGGCGCAAGGT
ATACCAACAGCACATTAG
back to top