mRNA_M-pyrifera_M_contig121627.4444.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121627.4444.1
Unique NamemRNA_M-pyrifera_M_contig121627.4444.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Match: A0A2E7K729_9PLAN (Cadherin domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K729_9PLAN)

HSP 1 Score: 229 bits (584), Expect = 6.450e-70
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 1 
Query:    1 TGELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLSLGENFR 351
            TGELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAW+RNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWML LGENFR
Sbjct:  504 TGELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAWVRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLYLGENFR 620
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BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Match: A0A518ADI6_9PLAN (Ig domain protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ADI6_9PLAN)

HSP 1 Score: 209 bits (533), Expect = 2.000e-62
Identity = 101/117 (86.32%), Postives = 114/117 (97.44%), Query Frame = 1 
Query:    1 TGELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLSLGENFR 351
            TGELTWTPSV+ E+KEYPVTVKVTDSGIP+ASS+QK++V V LDDAFFTFLTGSIELDG+RIAWIRNRATN+KREVKEGD+IDVADLHAVVKTITD++++LEIDGKPWMLSLGENFR
Sbjct:  504 TGELTWTPSVSAELKEYPVTVKVTDSGIPAASSSQKISVAVALDDAFFTFLTGSIELDGKRIAWIRNRATNQKREVKEGDAIDVADLHAVVKTITDKYVVLEIDGKPWMLSLGENFR 620
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BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Match: A0A3D3R8F5_9PLAN (Cadherin domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3R8F5_9PLAN)

HSP 1 Score: 195 bits (495), Expect = 1.590e-58
Identity = 89/117 (76.07%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 TGELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLSLGENFR 351
            TGELTWTPS +TE+KEYP+TV V+DSG P  +S+Q++ V V+LDDAFFTFLTGSIE+DG++IAWIRNRATN+KRE++EGD++DVAD+H VVK+ITDQH+ILEIDGKPWMLSLGENFR
Sbjct:  307 TGELTWTPSASTELKEYPITVTVSDSGTPPVTSSQQINVKVSLDDAFFTFLTGSIEIDGKKIAWIRNRATNQKREIQEGDTLDVADIHGVVKSITDQHLILEIDGKPWMLSLGENFR 423
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BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Match: A6CD17_9PLAN (Cadherin domain-containing protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6CD17_9PLAN)

HSP 1 Score: 195 bits (496), Expect = 5.020e-57
Identity = 89/117 (76.07%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 TGELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLSLGENFR 351
            TGELTWTPS +TE+KEYP+TV V+DSG P  +S+Q++ V V+LDDAFFTFLTGSIE+DG++IAWIRNRATN+KRE++EGD+IDVAD+H VVK+ITDQH+ILE+DGKPWMLSLGENFR
Sbjct:  504 TGELTWTPSASTELKEYPITVTVSDSGTPPVTSSQQINVKVSLDDAFFTFLTGSIEIDGKKIAWIRNRATNQKREIQEGDTIDVADIHGVVKSITDQHLILEVDGKPWMLSLGENFR 620
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BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Match: A0A2E2C8T6_9PLAN (Cadherin domain-containing protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C8T6_9PLAN)

HSP 1 Score: 191 bits (485), Expect = 1.990e-55
Identity = 89/116 (76.72%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    4 GELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLSLGENFR 351
            GELTWTPS +TE+KEYP+TV V+DSG P  +S+Q++ V+V+LDDAFFTFLTGSIE+DG++IAWIRNRATN+KREV+EGDS+ VAD+  VVKTITDQH+ILEIDGKPWMLSLGENFR
Sbjct:  505 GELTWTPSASTELKEYPITVTVSDSGTPPVTSSQQINVSVSLDDAFFTFLTGSIEIDGKKIAWIRNRATNQKREVQEGDSLKVADIQGVVKTITDQHLILEIDGKPWMLSLGENFR 620
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BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Match: A0A517VKI0_9PLAN (Ig domain protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VKI0_9PLAN)

HSP 1 Score: 181 bits (458), Expect = 1.610e-51
Identity = 83/116 (71.55%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:    4 GELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLSLGENFR 351
            GELTW P+  TE+KEYP+TV V+DSG P  +S+  + V V+LDDAFFTFLTGSIE+DG++IAWIRNRATN+KRE++ GD++DVAD+H VVK+ITDQ +ILEIDGKPWMLSLGENFR
Sbjct:  505 GELTWIPATTTELKEYPITVTVSDSGTPPVTSSHLINVKVSLDDAFFTFLTGSIEIDGKKIAWIRNRATNQKREIQVGDTLDVADIHGVVKSITDQQLILEIDGKPWMLSLGENFR 620
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BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Match: A0A517RMB5_9PLAN (Ig domain protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RMB5_9PLAN)

HSP 1 Score: 174 bits (442), Expect = 3.240e-49
Identity = 79/117 (67.52%), Postives = 104/117 (88.89%), Query Frame = 1 
Query:    1 TGELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLSLGENFR 351
            TGELTWTP V+ E+KEYP+TV V+DSG P  SS++++++ V LDDAFFTFLTGSI++DG+++AW+RNRATN+K+EV+ GD I+VA++ AVVK IT++H+ILEIDGK WMLSLGENFR
Sbjct:  504 TGELTWTPPVSMELKEYPITVTVSDSGTPPVSSSKQISIKVALDDAFFTFLTGSIDIDGKKVAWLRNRATNQKQEVQTGDKINVAEIQAVVKAITEKHLILEIDGKQWMLSLGENFR 620
[Close]
BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Match: A0A518IJ75_9PLAN (Ig domain protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IJ75_9PLAN)

HSP 1 Score: 172 bits (437), Expect = 1.690e-48
Identity = 80/117 (68.38%), Postives = 100/117 (85.47%), Query Frame = 1 
Query:    1 TGELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLSLGENFR 351
            TGEL WTP    E+KEYP+TV V+DSGIP  SS++++ + V LDDAFFTFLTGSI+LDG+++AWIRNRATN+K+EV  GD I+VA++ AVVK+IT+ H+ILEIDGK WMLSLGENFR
Sbjct:  504 TGELKWTPPATMELKEYPITVTVSDSGIPPVSSSKQINIKVALDDAFFTFLTGSIDLDGKKVAWIRNRATNQKQEVHTGDKINVAEISAVVKSITENHVILEIDGKQWMLSLGENFR 620
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BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Match: A0A517WST2_9PLAN (Cadherin domain-containing protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WST2_9PLAN)

HSP 1 Score: 172 bits (437), Expect = 1.690e-48
Identity = 78/117 (66.67%), Postives = 105/117 (89.74%), Query Frame = 1 
Query:    1 TGELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTFLTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLSLGENFR 351
            TGELTWTP+ + E+K+Y +TVKV+DSG P  SST+ +TV V LDDAFFTFLTGSI +DG++IAW+RNRATN+K+EV+ GD+I+V+++ A+VK+I+D+++ILEIDGKPW+LSLGENFR
Sbjct:  504 TGELTWTPAASAELKDYVITVKVSDSGTPPVSSTENITVKVLLDDAFFTFLTGSINVDGKKIAWLRNRATNQKQEVQAGDTINVSEIRAIVKSISDKYLILEIDGKPWVLSLGENFR 620
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BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Match: A0A3L7V735_9BACT (Cadherin repeat domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7V735_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 5.670e-9
Identity = 40/124 (32.26%), Postives = 65/124 (52.42%), Query Frame = 1 
Query:    4 GELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVT-----------LDDAFFTFLTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHIILEIDGKPWMLSLGE 342
            G L+WT   AT++ +Y V ++ TDSGIP+ SS Q +++ V             D A   F++G +       AWIR++  N+   V+EG+ + + D+   V +I    I +E +GK W + L E
Sbjct:  265 GNLSWT---ATDLGDYKVGIRATDSGIPAKSSVQWISIKVQDAPPPVKKPKDFDVASQAFVSGLLADGKGPQAWIRSKTENKTFYVREGEQLKLGDIEGKVISIGLNFIEVETEGKRWTVGLDE 385
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121627.4444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2E7K729_9PLAN6.450e-7098.29Cadherin domain-containing protein n=6 Tax=Gimesia... [more]
A0A518ADI6_9PLAN2.000e-6286.32Ig domain protein n=4 Tax=Gimesia panareensis TaxI... [more]
A0A3D3R8F5_9PLAN1.590e-5876.07Cadherin domain-containing protein n=2 Tax=Gimesia... [more]
A6CD17_9PLAN5.020e-5776.07Cadherin domain-containing protein n=6 Tax=Plancto... [more]
A0A2E2C8T6_9PLAN1.990e-5576.72Cadherin domain-containing protein n=5 Tax=Plancto... [more]
A0A517VKI0_9PLAN1.610e-5171.55Ig domain protein n=1 Tax=Gimesia algae TaxID=2527... [more]
A0A517RMB5_9PLAN3.240e-4967.52Ig domain protein n=1 Tax=Gimesia alba TaxID=25279... [more]
A0A518IJ75_9PLAN1.690e-4868.38Ig domain protein n=1 Tax=Gimesia fumaroli TaxID=2... [more]
A0A517WST2_9PLAN1.690e-4866.67Cadherin domain-containing protein n=2 Tax=Gimesia... [more]
A0A3L7V735_9BACT5.670e-932.26Cadherin repeat domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121627contigM-pyrifera_M_contig121627:181..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score198.0
Seed ortholog evalue2.5e-48
Seed eggNOG ortholog344747.PM8797T_14284
Preferred namepeaD
Hectar predicted targeting categoryother localisation
EggNOG free text desc.amine dehydrogenase activity
EggNOG OGs2J2EB@203682,COG3391@1,COG3391@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.4408915-CDS-M-pyrifera_M_contig121627:180..5311622815735.4408915-CDS-M-pyrifera_M_contig121627:180..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121627 181..531 -
1692277544.8527706-CDS-M-pyrifera_M_contig121627:180..5311692277544.8527706-CDS-M-pyrifera_M_contig121627:180..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121627 181..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121627.4444.1prot_M-pyrifera_M_contig121627.4444.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121627 181..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121627.4444.1

>prot_M-pyrifera_M_contig121627.4444.1 ID=prot_M-pyrifera_M_contig121627.4444.1|Name=mRNA_M-pyrifera_M_contig121627.4444.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
TGELTWTPSVATEMKEYPVTVKVTDSGIPSASSTQKLTVNVTLDDAFFTF
LTGSIELDGRRIAWIRNRATNEKREVKEGDSIDVADLHAVVKTITDQHII
LEIDGKPWMLSLGENFR
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mRNA from alignment at M-pyrifera_M_contig121627:181..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121627.4444.1 ID=mRNA_M-pyrifera_M_contig121627.4444.1|Name=mRNA_M-pyrifera_M_contig121627.4444.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig121627:181..531- (Macrocystis pyrifera P11B4 male)
ACCGGTGAGTTGACCTGGACGCCGTCCGTAGCGACAGAAATGAAAGAATA
CCCTGTGACAGTCAAAGTCACCGATTCCGGGATACCCTCTGCGTCCAGCA
CTCAGAAGCTGACAGTTAATGTCACATTAGATGATGCATTTTTTACATTT
TTAACAGGCAGTATCGAACTGGATGGCCGTCGAATCGCCTGGATCCGCAA
TCGCGCTACCAATGAAAAACGGGAAGTCAAAGAGGGGGATTCAATCGATG
TCGCAGATTTGCATGCGGTTGTGAAAACGATCACCGATCAACACATCATT
CTGGAAATAGACGGAAAGCCCTGGATGCTCTCTTTGGGAGAAAATTTCAG
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121627:181..531-

>mRNA_M-pyrifera_M_contig121627.4444.1 ID=mRNA_M-pyrifera_M_contig121627.4444.1|Name=mRNA_M-pyrifera_M_contig121627.4444.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig121627:181..531- (Macrocystis pyrifera P11B4 male)
ACCGGTGAGTTGACCTGGACGCCGTCCGTAGCGACAGAAATGAAAGAATA
CCCTGTGACAGTCAAAGTCACCGATTCCGGGATACCCTCTGCGTCCAGCA
CTCAGAAGCTGACAGTTAATGTCACATTAGATGATGCATTTTTTACATTT
TTAACAGGCAGTATCGAACTGGATGGCCGTCGAATCGCCTGGATCCGCAA
TCGCGCTACCAATGAAAAACGGGAAGTCAAAGAGGGGGATTCAATCGATG
TCGCAGATTTGCATGCGGTTGTGAAAACGATCACCGATCAACACATCATT
CTGGAAATAGACGGAAAGCCCTGGATGCTCTCTTTGGGAGAAAATTTCAG
AACCGGTGAGTTGACCTGGACGCCGTCCGTAGCGACAGAAATGAAAGAAT
ACCCTGTGACAGTCAAAGTCACCGATTCCGGGATACCCTCTGCGTCCAGC
ACTCAGAAGCTGACAGTTAATGTCACATTAGATGATGCATTTTTTACATT
TTTAACAGGCAGTATCGAACTGGATGGCCGTCGAATCGCCTGGATCCGCA
ATCGCGCTACCAATGAAAAACGGGAAGTCAAAGAGGGGGATTCAATCGAT
GTCGCAGATTTGCATGCGGTTGTGAAAACGATCACCGATCAACACATCAT
TCTGGAAATAGACGGAAAGCCCTGGATGCTCTCTTTGGGAGAAAATTTCA
GA
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