mRNA_M-pyrifera_M_contig121479.4423.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121479.4423.1
Unique NamemRNA_M-pyrifera_M_contig121479.4423.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Match: A0A517PVN3_9PLAN (Aerobic cobaltochelatase subunit CobN n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PVN3_9PLAN)

HSP 1 Score: 311 bits (798), Expect = 4.960e-96
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 1
Query:    4 MRNNQELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIDLHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLVTPLGRPRIDVVMTVTGMYRDSFPEKILLLD 456
            MRNNQELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTI LHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLVTPLGRPRIDVVMTVTGMYRDSFPEKILLLD
Sbjct:  817 MRNNQELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIALHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLVTPLGRPRIDVVMTVTGMYRDSFPEKILLLD 967          
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Match: F0SHE5_RUBBR (Magnesium chelatase n=1 Tax=Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / IAM 15109 / NBRC 103401 / IFAM 1448) TaxID=756272 RepID=F0SHE5_RUBBR)

HSP 1 Score: 280 bits (716), Expect = 9.660e-85
Identity = 126/152 (82.89%), Postives = 145/152 (95.39%), Query Frame = 1
Query:    1 LMRNNQELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIDLHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLVTPLGRPRIDVVMTVTGMYRDSFPEKILLLD 456
            +MR+N+EL+YL RALNGEFIEVGPPGDPLSNP IFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTI+LHR+++  +PRKLS+TLWANTM+RTDG LE+EVLHLLG+EP+WN RGDL D+++V+PLGRPR+DVVMTVTGMYRDSFPEKILLLD
Sbjct:  802 MMRHNEELDYLARALNGEFIEVGPPGDPLSNPNIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIELHRQRHGEFPRKLSVTLWANTMVRTDGVLESEVLHLLGVEPIWNSRGDLEDIQIVSPLGRPRVDVVMTVTGMYRDSFPEKILLLD 953          
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Match: A0A7C7V2U9_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V2U9_9PLAN)

HSP 1 Score: 260 bits (664), Expect = 7.790e-82
Identity = 116/151 (76.82%), Postives = 137/151 (90.73%), Query Frame = 1
Query:    4 MRNNQELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIDLHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLVTPLGRPRIDVVMTVTGMYRDSFPEKILLLD 456
            MR+NQEL +L RAL+G F+ VGPPGDPLSNPAIFPTGRNQYQYNP KLPT+EAW VGKRMA+QT+D+HR+++  YP KLS+TLWANT+IRT G LE+E+L+  GLEPVWNRRGD+ DVKL+TPLGRPR+DVVMTVTGMYRDSFP+K+LLLD
Sbjct:  377 MRHNQELEFLARALDGGFVPVGPPGDPLSNPAIFPTGRNQYQYNPKKLPTREAWAVGKRMAQQTLDIHRRRHGDYPSKLSVTLWANTLIRTHGVLESEILYFSGLEPVWNRRGDVVDVKLITPLGRPRVDVVMTVTGMYRDSFPDKMLLLD 527          
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Match: UPI0005694321 (cobaltochelatase subunit CobN n=1 Tax=Bryobacter aggregatus TaxID=360054 RepID=UPI0005694321)

HSP 1 Score: 162 bits (411), Expect = 1.620e-43
Identity = 77/150 (51.33%), Postives = 104/150 (69.33%), Query Frame = 1
Query:   13 NQELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIDLHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLV--TPLGRPRIDVVMTVTGMYRDSFPEKILLLD 456
            ++EL  L  ALN  F+   P GDP++ PA  PTGRN +Q +P  LPTK AWEVGKRMA Q ++ H++ +  YP +LS+ LW     R  GA+EA+ L+L+G+EP WN+RG    +KL+    LGRPR++VV TV+G+YRD  P+KILLLD
Sbjct:  739 SRELEVLIEALNAGFVSSAPVGDPIAVPAGLPTGRNLHQGDPSLLPTKAAWEVGKRMANQLLEQHKRSHGRYPERLSMVLWQGETGRHQGAMEAQALYLMGVEPEWNQRGVPDRLKLIPDAELGRPRVNVVFTVSGLYRDGLPDKILLLD 888          
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Match: A0A7C3DZ64_9BACT (Cobaltochelatase subunit CobN (Fragment) n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7C3DZ64_9BACT)

HSP 1 Score: 160 bits (404), Expect = 1.420e-42
Identity = 77/150 (51.33%), Postives = 100/150 (66.67%), Query Frame = 1
Query:   13 NQELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIDLHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLVTP--LGRPRIDVVMTVTGMYRDSFPEKILLLD 456
            +QELN L  ALNG ++  G  GDPL  PA  PTGRN +  +P   PT  AW++GKRMAE  I+  R++   YP K+S+ LW     R  G  EA+ L LLG+EPVWN RG+  DV+L++   L RPR+DVV+T++G+YRD  PEKI LLD
Sbjct:  759 SQELNSLISALNGHYLPTGVSGDPLRTPAALPTGRNLHDTDPRTFPTPTAWQLGKRMAESLIEEQRQRLGRYPEKISMVLWYGEATRHQGVAEAQALALLGVEPVWNGRGEADDVRLLSAEELKRPRVDVVLTMSGLYRDGMPEKIELLD 908          
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Match: A0A249SY83_9BACT (Cobalt chelatase n=4 Tax=unclassified Chitinophaga TaxID=2619133 RepID=A0A249SY83_9BACT)

HSP 1 Score: 156 bits (395), Expect = 2.330e-41
Identity = 72/156 (46.15%), Postives = 106/156 (67.95%), Query Frame = 1
Query:    1 LMRNNQELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIDLHRKKYN--AYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLVTPLG--RPRIDVVMTVTGMYRDSFPEKILLLD 456
            L + + E+  + RALNG +I  GP  DP+ NP   P+GRN Y  N   +P+KEAWE+G+RMA+Q +  + +K+   AYP+K++  LW++ +  T G  EAE+L+L+G+EPVWN +G + DV+L+      RPRIDV++T +G YRD F +KI LLD
Sbjct:  774 LQQTDNEVTQIIRALNGRYISTGPSDDPVRNPLSLPSGRNPYPVNVKAVPSKEAWELGQRMADQLLLQYEEKHGKGAYPKKIAFVLWSSEITHTQGVTEAEILYLMGVEPVWNSKGQVMDVRLIPSANWKRPRIDVLITTSGTYRDHFGDKIKLLD 929          
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Match: A0A328P854_9EURY (Cobaltochelatase subunit CobN (Fragment) n=1 Tax=Methanothermobacter tenebrarum TaxID=680118 RepID=A0A328P854_9EURY)

HSP 1 Score: 155 bits (391), Expect = 7.990e-41
Identity = 67/152 (44.08%), Postives = 103/152 (67.76%), Query Frame = 1
Query:    1 LMRNNQELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIDLHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLVTPLGRPRIDVVMTVTGMYRDSFPEKILLLD 456
            ++ +  E+  +  AL G +I  GP GDP+ NP   PTGRN Y ++P  +PTK AWE GK++ ++ ++ + +KY  YP K++  LWA   +R  G +E+E+L+LLG++PVW+ +G + DV+L+T LGRPRIDV +  +G+YRD   + I LLD
Sbjct:  780 IIESKNEITSILNALEGAYITPGPRGDPIKNPEALPTGRNPYPFDPRTIPTKVAWETGKKLVDKFLEEYLEKYGEYPVKIAYVLWACETMRHQGVMESEILYLLGVKPVWDTKGRVKDVELITDLGRPRIDVTIITSGLYRDLHIDLISLLD 931          
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Match: A0A7C6A2C0_9BACT (Cobaltochelatase subunit CobN n=1 Tax=Candidatus Solibacter sp. TaxID=2068625 RepID=A0A7C6A2C0_9BACT)

HSP 1 Score: 155 bits (391), Expect = 8.010e-41
Identity = 70/148 (47.30%), Postives = 102/148 (68.92%), Query Frame = 1
Query:   19 ELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIDLHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLV--TPLGRPRIDVVMTVTGMYRDSFPEKILLLD 456
            EL    R L GE+   GP GDPL +PA  P+GRN + ++P  +PT  A E+G+++A++ I+ HR++    P K+S+ LW    IR  GA+E + L+L+GLEP WN RG + +++L+    LGRPR+DVV+TV G+YRD FP+K+LLLD
Sbjct:  770 ELENFMRVLRGEYQPSGPSGDPLRSPAALPSGRNLHDFDPSLIPTPAACELGRKLADELIEQHRRRTGRIPEKVSLVLWYGETIRHQGAMECQALYLMGLEPRWNSRGVVDELRLIPEAELGRPRVDVVLTVAGIYRDGFPDKMLLLD 917          
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Match: A0A662QP47_9ARCH (Cobaltochelatase subunit CobN n=1 Tax=Candidatus Pacearchaeota archaeon TaxID=2026773 RepID=A0A662QP47_9ARCH)

HSP 1 Score: 155 bits (391), Expect = 8.010e-41
Identity = 69/149 (46.31%), Postives = 106/149 (71.14%), Query Frame = 1
Query:   16 QELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIDLHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLVT--PLGRPRIDVVMTVTGMYRDSFPEKILLLD 456
            +E+  L +AL+G++I  G   DPL NP   PTG+N Y ++P K+P+   +E+GK++A++ I+ ++KKY  YP KL+  LWA   IR +G +E+E+L++LG++P WN+RG +  ++L+    LGRPRIDVV+T +G+YRD FP  I LLD
Sbjct:  764 EEIKSLIKALSGKYIRPGQGNDPLRNPNSLPTGKNFYAFDPTKIPSPSVYELGKKLAQELIEKYKKKYGKYPDKLAFVLWACETIRHEGVMESEILYILGVKPKWNKRGKIIGLELIPREKLGRPRIDVVITASGLYRDVFPNLIQLLD 912          
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Match: UPI001571E2D5 (cobaltochelatase subunit CobN n=1 Tax=Marinifaba aquimaris TaxID=2741323 RepID=UPI001571E2D5)

HSP 1 Score: 155 bits (391), Expect = 8.010e-41
Identity = 73/147 (49.66%), Postives = 105/147 (71.43%), Query Frame = 1
Query:   19 ELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPTKEAWEVGKRMAEQTIDLHRKKYNAYPRKLSITLWANTMIRTDGALEAEVLHLLGLEPVWNRRGDLTDVKLVT--PLGRPRIDVVMTVTGMYRDSFPEKILLL 453
            E+  L +AL+G++I V   GDP+ NP   PTGRN   +NP K+P+KEA+E G ++ EQTID +  K+  YP KL+ +LW+   +R  GALEA++LH LGL+P WNR+G++T  +++    LGRPRIDVV++ TG+YRD+FP  +L L
Sbjct:  814 EIENLLKALDGKYIPVSHGGDPIRNPNAAPTGRNLIGFNPAKVPSKEAYEAGVQLMEQTIDTYVAKHGRYPDKLAFSLWSLETMRHQGALEAQILHALGLKPKWNRQGNVTGTEVIEYKDLGRPRIDVVISATGLYRDAFPNVMLWL 960          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121479.4423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PVN3_9PLAN4.960e-9699.34Aerobic cobaltochelatase subunit CobN n=1 Tax=Gime... [more]
F0SHE5_RUBBR9.660e-8582.89Magnesium chelatase n=1 Tax=Rubinisphaera brasilie... [more]
A0A7C7V2U9_9PLAN7.790e-8276.82Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
UPI00056943211.620e-4351.33cobaltochelatase subunit CobN n=1 Tax=Bryobacter a... [more]
A0A7C3DZ64_9BACT1.420e-4251.33Cobaltochelatase subunit CobN (Fragment) n=1 Tax=B... [more]
A0A249SY83_9BACT2.330e-4146.15Cobalt chelatase n=4 Tax=unclassified Chitinophaga... [more]
A0A328P854_9EURY7.990e-4144.08Cobaltochelatase subunit CobN (Fragment) n=1 Tax=M... [more]
A0A7C6A2C0_9BACT8.010e-4147.30Cobaltochelatase subunit CobN n=1 Tax=Candidatus S... [more]
A0A662QP47_9ARCH8.010e-4146.31Cobaltochelatase subunit CobN n=1 Tax=Candidatus P... [more]
UPI001571E2D58.010e-4149.66cobaltochelatase subunit CobN n=1 Tax=Marinifaba a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121479contigM-pyrifera_M_contig121479:78..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score279.6
Seed ortholog evalue8.4e-73
Seed eggNOG ortholog756272.Plabr_4124
KEGG rclassRC02000
KEGG koko:K02230
KEGG ReactionR05227
KEGG Pathwayko00860,ko01100,map00860,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM CobN magnesium chelatase
EggNOG OGs2IWRD@203682,COG1429@1,COG1429@2
EC6.6.1.2
COG Functional cat.H
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size456
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.031477-UTR-M-pyrifera_M_contig121479:77..801622815734.031477-UTR-M-pyrifera_M_contig121479:77..80Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121479 78..80 +
1692277544.135883-UTR-M-pyrifera_M_contig121479:77..801692277544.135883-UTR-M-pyrifera_M_contig121479:77..80Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121479 78..80 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.041711-CDS-M-pyrifera_M_contig121479:80..5331622815734.041711-CDS-M-pyrifera_M_contig121479:80..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121479 81..533 +
1692277544.1485784-CDS-M-pyrifera_M_contig121479:80..5331692277544.1485784-CDS-M-pyrifera_M_contig121479:80..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121479 81..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121479.4423.1prot_M-pyrifera_M_contig121479.4423.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121479 81..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121479.4423.1

>prot_M-pyrifera_M_contig121479.4423.1 ID=prot_M-pyrifera_M_contig121479.4423.1|Name=mRNA_M-pyrifera_M_contig121479.4423.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MRNNQELNYLTRALNGEFIEVGPPGDPLSNPAIFPTGRNQYQYNPDKLPT
KEAWEVGKRMAEQTIDLHRKKYNAYPRKLSITLWANTMIRTDGALEAEVL
HLLGLEPVWNRRGDLTDVKLVTPLGRPRIDVVMTVTGMYRDSFPEKILLL
D
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mRNA from alignment at M-pyrifera_M_contig121479:78..533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121479.4423.1 ID=mRNA_M-pyrifera_M_contig121479.4423.1|Name=mRNA_M-pyrifera_M_contig121479.4423.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig121479:78..533+ (Macrocystis pyrifera P11B4 male)
CTGATGCGCAACAATCAGGAGCTCAATTATCTGACACGGGCCCTGAACGG CGAATTTATCGAAGTGGGCCCCCCGGGAGATCCCCTCTCGAACCCCGCGA TCTTTCCCACGGGCCGGAATCAGTATCAGTACAATCCGGATAAGCTTCCT ACGAAAGAAGCCTGGGAAGTCGGCAAACGGATGGCCGAACAGACGATCGA TCTGCACCGTAAGAAGTACAACGCATATCCCCGCAAGTTGAGTATCACGC TCTGGGCCAACACGATGATCCGTACTGACGGTGCCCTTGAAGCAGAGGTC CTGCACCTGTTGGGACTCGAACCGGTCTGGAACCGCAGAGGCGATCTGAC CGACGTCAAACTTGTGACCCCGCTGGGACGTCCGCGGATCGATGTCGTGA TGACCGTGACCGGAATGTATCGCGATTCCTTCCCGGAAAAAATCCTGCTC CTGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121479:78..533+

>mRNA_M-pyrifera_M_contig121479.4423.1 ID=mRNA_M-pyrifera_M_contig121479.4423.1|Name=mRNA_M-pyrifera_M_contig121479.4423.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig121479:78..533+ (Macrocystis pyrifera P11B4 male)
ATGCGCAACAATCAGGAGCTCAATTATCTGACACGGGCCCTGAACGGCGA
ATTTATCGAAGTGGGCCCCCCGGGAGATCCCCTCTCGAACCCCGCGATCT
TTCCCACGGGCCGGAATCAGTATCAGTACAATCCGGATAAGCTTCCTACG
AAAGAAGCCTGGGAAGTCGGCAAACGGATGGCCGAACAGACGATCGATCT
GCACCGTAAGAAGTACAACGCATATCCCCGCAAGTTGAGTATCACGCTCT
GGGCCAACACGATGATCCGTACTGACGGTGCCCTTGAAGCAGAGGTCCTG
CACCTGTTGGGACTCGAACCGGTCTGGAACCGCAGAGGCGATCTGACCGA
CGTCAAACTTGTGACCCCGCTGGGACGTCCGCGGATCGATGTCGTGATGA
CCGTGACCGGAATGTATCGCGATTCCTTCCCGGAAAAAATCCTGCTCCTG
GACATGCGCAACAATCAGGAGCTCAATTATCTGACACGGGCCCTGAACGG
CGAATTTATCGAAGTGGGCCCCCCGGGAGATCCCCTCTCGAACCCCGCGA
TCTTTCCCACGGGCCGGAATCAGTATCAGTACAATCCGGATAAGCTTCCT
ACGAAAGAAGCCTGGGAAGTCGGCAAACGGATGGCCGAACAGACGATCGA
TCTGCACCGTAAGAAGTACAACGCATATCCCCGCAAGTTGAGTATCACGC
TCTGGGCCAACACGATGATCCGTACTGACGGTGCCCTTGAAGCAGAGGTC
CTGCACCTGTTGGGACTCGAACCGGTCTGGAACCGCAGAGGCGATCTGAC
CGACGTCAAACTTGTGACCCCGCTGGGACGTCCGCGGATCGATGTCGTGA
TGACCGTGACCGGAATGTATCGCGATTCCTTCCCGGAAAAAATCCTGCTC
CTGGAC
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