mRNA_M-pyrifera_M_contig121460.4419.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121460.4419.1
Unique NamemRNA_M-pyrifera_M_contig121460.4419.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Match: A0A8B7ZC01_ACAPL (protein ZGRF1-like isoform X4 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZC01_ACAPL)

HSP 1 Score: 125 bits (313), Expect = 5.760e-30
Identity = 66/143 (46.15%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    1 RVVGVTFAATSFPCLADQKFDVIIVDEASQVLEPPSLYPLLEFHARAAVLVGDPLQLPPATARAPPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPLILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPILPIPPL 429
            +VVGVT AA++FPC+ + KF V+++DE SQ+ EP SL P+  F     VLVGDP QL P         + Q S    +T  C    TLF RL+  G +P++L  QYRCHP +SA+A +LFY   L+DGV+  DR P+ P+P L
Sbjct:  618 KVVGVTCAASTFPCMNNLKFPVVLLDECSQMTEPSSLLPITRFQCENLVLVGDPKQLDP---------TIQGSE---ATHGCGLEQTLFDRLILLGCKPILLRTQYRCHPTISAIANSLFYEQQLIDGVTTRDRLPLAPLPTL 748          
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Match: A0A8B7Z4U5_ACAPL (protein ZGRF1-like isoform X3 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z4U5_ACAPL)

HSP 1 Score: 125 bits (313), Expect = 6.000e-30
Identity = 66/143 (46.15%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    1 RVVGVTFAATSFPCLADQKFDVIIVDEASQVLEPPSLYPLLEFHARAAVLVGDPLQLPPATARAPPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPLILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPILPIPPL 429
            +VVGVT AA++FPC+ + KF V+++DE SQ+ EP SL P+  F     VLVGDP QL P         + Q S    +T  C    TLF RL+  G +P++L  QYRCHP +SA+A +LFY   L+DGV+  DR P+ P+P L
Sbjct: 1068 KVVGVTCAASTFPCMNNLKFPVVLLDECSQMTEPSSLLPITRFQCENLVLVGDPKQLDP---------TIQGSE---ATHGCGLEQTLFDRLILLGCKPILLRTQYRCHPTISAIANSLFYEQQLIDGVTTRDRLPLAPLPTL 1198          
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Match: UPI0018D760FD (uncharacterized protein LOC119731816 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D760FD)

HSP 1 Score: 122 bits (306), Expect = 5.460e-29
Identity = 68/143 (47.55%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 RVVGVTFAATSFPCLADQKFDVIIVDEASQVLEPPSLYPLLEFHARAAVLVGDPLQLPPATARAPPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPLILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPILPIPPL 429
            RVVGVT AA +FPC++  KF VI++DE SQ+ EP SL P+  F     VLVGDP QL P         + Q S    +        TLF+RL+  G  P++L  QYRCHP +SA+A  LFY   L+DGVS+ DR P+ PIP L
Sbjct: 2586 RVVGVTCAACTFPCMSSLKFPVILLDECSQMTEPSSLLPIARFQCEKLVLVGDPKQLDP---------TIQGSE---AAHRHGLEQTLFNRLILLGCEPILLRTQYRCHPTISAIANCLFYDQQLIDGVSSKDRPPLAPIPTL 2716          
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Match: A0A091VKN7_NIPNI (Uncharacterized protein C4orf21 (Fragment) n=2 Tax=Nipponia nippon TaxID=128390 RepID=A0A091VKN7_NIPNI)

HSP 1 Score: 119 bits (299), Expect = 4.260e-28
Identity = 68/138 (49.28%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 RVVGVTFAATSFPCLADQKFDVIIVDEASQVLEPPSLYPLLEFHARAAVLVGDPLQLPPATARAPPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPLILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPIL 414
            +VVGVT AA  FPCL   KF V+++DE SQ+ EP SL P+  F     VLVGDP QLPP         + Q S    S        TLF RL   G +P++L  QYRCHP +SA+A  LFY   L+DGVSATDR+P+L
Sbjct:  518 KVVGVTCAACPFPCLNSLKFPVVMLDECSQMTEPASLLPIARFQCEKLVLVGDPKQLPP---------TIQGSE---SVHEKGLEQTLFDRLCLMGHKPILLRTQYRCHPAISAIANELFYEGNLIDGVSATDRSPLL 643          
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Match: A0A6H5KMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 5.850e-28
Identity = 77/156 (49.36%), Postives = 98/156 (62.82%), Query Frame = 1
Query:   58 FDVIIVDEASQVLEPPSLYPLLEFHARAAVLVGDPLQLPPATARA--PPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPLILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPILP-IPPLTLVRCPGR-AHSEA--GSCSNPPEAVAVA 507
            +D++++DE SQ++EP SL P+     R  VLVGDP+QLPP  ARA  P  A  +  +  P     T   TLF RL   G++PL+LGRQYRCHP +SA+A  LFY   L DGV+A DR P++P + PLTL+   GR A S A  GS  N  EA AVA
Sbjct:  492 YDIVVLDECSQIVEPMSLLPVAVAQPRRLVLVGDPMQLPPPVARARMPKEAWLEKVNARPGNGD-TLEKTLFVRLAKLGVQPLLLGRQYRCHPQMSALASRLFYQGRLTDGVAARDRGPLVPGLAPLTLLDAAGRGAESTAPGGSIKNAFEARAVA 646          
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Match: A0A6P9E4D8_PANGU (protein ZGRF1 isoform X1 n=4 Tax=Colubroidea TaxID=34989 RepID=A0A6P9E4D8_PANGU)

HSP 1 Score: 119 bits (298), Expect = 6.250e-28
Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 1
Query:    1 RVVGVTFAATSFPCLADQKFDVIIVDEASQVLEPPSLYPLLEFHARAAVLVGDPLQLPPATARAPPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPLILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPIL 414
            RVVG T AA SFPC+   KF ++I+DE SQ+ EP SL P+  F     +LVGDP QLPP         + Q S    S        TLF RL   G  P++L  QYRCHP+++A+   LFY  M+L+G+S TDRNP+L
Sbjct: 1243 RVVGSTCAACSFPCMRSLKFPIVILDECSQMTEPSSLLPIASFQCEKLILVGDPKQLPP---------TIQGSE---SAHDSGLEQTLFDRLCLMGYAPILLRTQYRCHPVIAAITNELFYEGMMLNGISETDRNPLL 1368          
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Match: A0A6J0D154_PERMB (protein ZGRF1 isoform X1 n=13 Tax=Neotominae TaxID=337963 RepID=A0A6J0D154_PERMB)

HSP 1 Score: 119 bits (298), Expect = 6.360e-28
Identity = 63/138 (45.65%), Postives = 85/138 (61.59%), Query Frame = 1
Query:    1 RVVGVTFAATSFPCLADQKFDVIIVDEASQVLEPPSLYPLLEFHARAAVLVGDPLQLPPATARAPPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPLILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPIL 414
            RVVG+T AA  FPC+ D KF V+++DE SQ+ EP SL P+  F +   +LVGDP QLPP         + Q S    +        TLF RL   G +P++L  QYRCHP++SA+A  LFY   L+DG+S T+R+P+L
Sbjct: 1724 RVVGITCAACPFPCMNDLKFPVVVLDECSQMTEPASLLPIARFESEKLILVGDPKQLPP---------TIQGSD---AAHENGLEQTLFDRLCLMGYKPILLRTQYRCHPVISAIANDLFYEGNLMDGISETERSPVL 1849          
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Match: UPI0010FADD26 (protein ZGRF1 n=5 Tax=Crotalinae TaxID=8710 RepID=UPI0010FADD26)

HSP 1 Score: 118 bits (296), Expect = 1.170e-27
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 1
Query:    1 RVVGVTFAATSFPCLADQKFDVIIVDEASQVLEPPSLYPLLEFHARAAVLVGDPLQLPPATARAPPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPLILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPILP-IPPLTLVRCPGRAHSEA 468
            RVVG T AA SFPC+   KF ++I+DE SQ+ EP SL+P+  F     +LVGDP QLPP         + Q S    S        TLF RL   G  P++L  QYRCHP+++A+   LFY  ++L+G+S TDR+P+L  +P L   +  G    EA
Sbjct: 1488 RVVGSTCAACSFPCMKSLKFPIVILDECSQMTEPSSLFPIASFECEKLILVGDPKQLPP---------TIQGSE---SAHDSGLEQTLFDRLCLMGYAPILLRTQYRCHPVIAAITNELFYEGIMLNGISETDRSPLLDWLPTLCFYKVNGSEQIEA 1632          
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Match: G1SSA0_RABIT (Zinc finger GRF-type containing 1 n=4 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1SSA0_RABIT)

HSP 1 Score: 118 bits (296), Expect = 1.180e-27
Identity = 69/159 (43.40%), Postives = 91/159 (57.23%), Query Frame = 1
Query:    1 RVVGVTFAATSFPCLADQKFDVIIVDEASQVLEPPSLYPLLEFHARAAVLVGDPLQLPPATARAPPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPLILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPILP-IPPLTLVRCPGRAHSEAGS 474
            RVVGVT AA  FPC+ D KF V+++DE SQ+ EP SL P+  F     +LVGDP QLPP         + Q S    +  +     TLF RL   G +P++L  QYRCHP +SA+A  LFY   L++G+S TDR+P+L  +P L      G    E G+
Sbjct: 1724 RVVGVTCAACPFPCMNDLKFPVVMLDECSQITEPASLLPIARFECEKLILVGDPKQLPP---------TIQGSE---AAHANGLEQTLFDRLCLMGHKPIMLRTQYRCHPAISAIANDLFYEGKLMNGISETDRSPLLEWLPTLCFYNVKGLEQIERGN 1870          
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Match: UPI001CFCA48B (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFCA48B)

HSP 1 Score: 118 bits (295), Expect = 1.590e-27
Identity = 74/167 (44.31%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    1 RVVGVTFAATSFPCLADQKFDVIIVDEASQVLEPPSLYPLLEFHARAAVLVGDPLQLPPATARAPPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPLILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPILP-IPPLTLVRCP-GRAHSEAGSCSNPPEA 495
            RVVGVT AAT F  L  QKF ++I+DE+SQ LEP +L PL  F     V VGDPLQLPP       +   ++ +P  S E      T+F RL   G  PL+L  QYRCHP +S +   LFY   L+DG++ +DR P++P +PP+ ++ C  G   SE  S  N  EA
Sbjct: 1121 RVVGVTCAATGFEVLKGQKFSILILDESSQCLEPSALLPLARFGCLKFVAVGDPLQLPPT------LTGTRTENPEHSLEK-----TIFIRLSNIGHEPLLLRTQYRCHPQISKITNELFYQNKLIDGITESDREPLIPGMPPVMVLDCEEGVEVSENTSIKNDLEA 1276          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121460.4419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B7ZC01_ACAPL5.760e-3046.15protein ZGRF1-like isoform X4 n=1 Tax=Acanthaster ... [more]
A0A8B7Z4U5_ACAPL6.000e-3046.15protein ZGRF1-like isoform X3 n=1 Tax=Acanthaster ... [more]
UPI0018D760FD5.460e-2947.55uncharacterized protein LOC119731816 n=1 Tax=Patir... [more]
A0A091VKN7_NIPNI4.260e-2849.28Uncharacterized protein C4orf21 (Fragment) n=2 Tax... [more]
A0A6H5KMF0_9PHAE5.850e-2849.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P9E4D8_PANGU6.250e-2846.38protein ZGRF1 isoform X1 n=4 Tax=Colubroidea TaxID... [more]
A0A6J0D154_PERMB6.360e-2845.65protein ZGRF1 isoform X1 n=13 Tax=Neotominae TaxID... [more]
UPI0010FADD261.170e-2742.68protein ZGRF1 n=5 Tax=Crotalinae TaxID=8710 RepID=... [more]
G1SSA0_RABIT1.180e-2743.40Zinc finger GRF-type containing 1 n=4 Tax=Oryctola... [more]
UPI001CFCA48B1.590e-2744.31uncharacterized protein n=1 Tax=Naegleria lovanien... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121460contigM-pyrifera_M_contig121460:5..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score129.4
Seed ortholog evalue1.6e-27
Seed eggNOG ortholog246437.XP_006162315.1
Preferred nameZGRF1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc ion binding
EggNOG OGs35EBV@314146,38HI4@33154,3BI4K@33208,3CYUG@33213,3J401@40674,489JZ@7711,498VN@7742,COG1112@1,KOG1802@2759
COG Functional cat.A
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
Exons1
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.8989677-CDS-M-pyrifera_M_contig121460:4..5321622815733.8989677-CDS-M-pyrifera_M_contig121460:4..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121460 5..532 +
1692277544.0770216-CDS-M-pyrifera_M_contig121460:4..5321692277544.0770216-CDS-M-pyrifera_M_contig121460:4..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121460 5..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121460.4419.1prot_M-pyrifera_M_contig121460.4419.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121460 5..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121460.4419.1

>prot_M-pyrifera_M_contig121460.4419.1 ID=prot_M-pyrifera_M_contig121460.4419.1|Name=mRNA_M-pyrifera_M_contig121460.4419.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
RVVGVTFAATSFPCLADQKFDVIIVDEASQVLEPPSLYPLLEFHARAAVL
VGDPLQLPPATARAPPIASFQSSSPTPSTESCTFATTLFSRLVAAGIRPL
ILGRQYRCHPMLSAVARALFYGPMLLDGVSATDRNPILPIPPLTLVRCPG
RAHSEAGSCSNPPEAVAVAACVREVV
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mRNA from alignment at M-pyrifera_M_contig121460:5..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121460.4419.1 ID=mRNA_M-pyrifera_M_contig121460.4419.1|Name=mRNA_M-pyrifera_M_contig121460.4419.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig121460:5..532+ (Macrocystis pyrifera P11B4 male)
AGAGTTGTTGGAGTGACATTTGCTGCAACATCATTTCCTTGTCTAGCAGA TCAAAAGTTTGATGTCATTATTGTGGATGAGGCATCGCAAGTTCTCGAAC CACCATCATTGTATCCATTACTGGAGTTCCATGCAAGGGCGGCAGTATTA GTTGGTGATCCACTACAACTTCCACCCGCAACAGCTCGCGCACCACCCAT TGCTTCTTTCCAATCCTCATCACCCACTCCTTCCACAGAATCATGTACTT TCGCAACAACATTGTTCTCACGACTAGTAGCTGCAGGAATTCGACCATTG ATTCTTGGAAGGCAATATAGATGTCATCCAATGTTGAGTGCAGTTGCACG AGCTTTGTTCTATGGACCAATGTTGTTGGATGGAGTATCTGCAACAGATC GCAACCCAATTCTCCCAATCCCACCACTGACACTTGTCCGTTGTCCTGGA CGAGCACACAGCGAAGCTGGAAGTTGTAGTAATCCACCAGAAGCTGTAGC TGTTGCAGCATGTGTACGCGAAGTGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121460:5..532+

>mRNA_M-pyrifera_M_contig121460.4419.1 ID=mRNA_M-pyrifera_M_contig121460.4419.1|Name=mRNA_M-pyrifera_M_contig121460.4419.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig121460:5..532+ (Macrocystis pyrifera P11B4 male)
AGAGTTGTTGGAGTGACATTTGCTGCAACATCATTTCCTTGTCTAGCAGA
TCAAAAGTTTGATGTCATTATTGTGGATGAGGCATCGCAAGTTCTCGAAC
CACCATCATTGTATCCATTACTGGAGTTCCATGCAAGGGCGGCAGTATTA
GTTGGTGATCCACTACAACTTCCACCCGCAACAGCTCGCGCACCACCCAT
TGCTTCTTTCCAATCCTCATCACCCACTCCTTCCACAGAATCATGTACTT
TCGCAACAACATTGTTCTCACGACTAGTAGCTGCAGGAATTCGACCATTG
ATTCTTGGAAGGCAATATAGATGTCATCCAATGTTGAGTGCAGTTGCACG
AGCTTTGTTCTATGGACCAATGTTGTTGGATGGAGTATCTGCAACAGATC
GCAACCCAATTCTCCCAATCCCACCACTGACACTTGTCCGTTGTCCTGGA
CGAGCACACAGCGAAGCTGGAAGTTGTAGTAATCCACCAGAAGCTGTAGC
TGTTGCAGCATGTGTACGCGAAGTGGTGAGAGTTGTTGGAGTGACATTTG
CTGCAACATCATTTCCTTGTCTAGCAGATCAAAAGTTTGATGTCATTATT
GTGGATGAGGCATCGCAAGTTCTCGAACCACCATCATTGTATCCATTACT
GGAGTTCCATGCAAGGGCGGCAGTATTAGTTGGTGATCCACTACAACTTC
CACCCGCAACAGCTCGCGCACCACCCATTGCTTCTTTCCAATCCTCATCA
CCCACTCCTTCCACAGAATCATGTACTTTCGCAACAACATTGTTCTCACG
ACTAGTAGCTGCAGGAATTCGACCATTGATTCTTGGAAGGCAATATAGAT
GTCATCCAATGTTGAGTGCAGTTGCACGAGCTTTGTTCTATGGACCAATG
TTGTTGGATGGAGTATCTGCAACAGATCGCAACCCAATTCTCCCAATCCC
ACCACTGACACTTGTCCGTTGTCCTGGACGAGCACACAGCGAAGCTGGAA
GTTGTAGTAATCCACCAGAAGCTGTAGCTGTTGCAGCATGTGTACGCGAA
GTGGTG
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