mRNA_M-pyrifera_M_contig12145.4416.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12145.4416.1
Unique NamemRNA_M-pyrifera_M_contig12145.4416.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12145.4416.1 vs. uniprot
Match: A0A6H5JSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.790e-21
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 ELVTNCYNFPAETFSYTNNVKNTYGSSPHLPLDLGSSAVNFTLHDTTGLPWNLDDALKAGKGKPVALIWG 210
            EL+TNCYNFP E F   N++++ YG+SPHL  DLGS AV+FTLHD  G  WNL + L AG GKPV +I+G
Sbjct:   32 ELITNCYNFPEENFHKGNSIRDIYGTSPHLVRDLGSPAVDFTLHDLDGNRWNLGEVLAAGAGKPVVMIFG 101
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BLAST of mRNA_M-pyrifera_M_contig12145.4416.1 vs. uniprot
Match: A0A835Z1L4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.000e-15
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 ELVTNCYNFPAETFSYTNNVKNTYGSSPHLPLDLGSSAVNFTLHDTTGLPWNLDDALKAGKGKPVALIWG 210
            EL  +CY FP + F+ TN +K TYG+SPH+ LD G++A++FTL+D  G  W L + L +   +PV LIWG
Sbjct:   10 ELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLAS---QPVCLIWG 76
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BLAST of mRNA_M-pyrifera_M_contig12145.4416.1 vs. uniprot
Match: D8LC80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC80_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.290e-13
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   40 FSYTNNVKNTYGSSPHLPLDLGSSAVNFTLHDTTGLPWNLDDALKAGKGKPVALIWG 210
            F   N+V++ YG+SPHL  DLGS AV+FTLHD  G  WNL + L AG+GKPV LI+G
Sbjct:   20 FHKGNSVRDIYGTSPHLVRDLGSPAVDFTLHDLDGNRWNLGEVLAAGEGKPVVLIFG 76
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12145.4416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JSG9_9PHAE1.790e-2160.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1L4_9STRA8.000e-1548.57Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LC80_ECTSI1.290e-1359.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12145contigM-pyrifera_M_contig12145:1084..1293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.797096-CDS-M-pyrifera_M_contig12145:1083..12931622815733.797096-CDS-M-pyrifera_M_contig12145:1083..1293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12145 1084..1293 -
1692277544.0239587-CDS-M-pyrifera_M_contig12145:1083..12931692277544.0239587-CDS-M-pyrifera_M_contig12145:1083..1293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12145 1084..1293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12145.4416.1prot_M-pyrifera_M_contig12145.4416.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12145 1084..1293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12145.4416.1

>prot_M-pyrifera_M_contig12145.4416.1 ID=prot_M-pyrifera_M_contig12145.4416.1|Name=mRNA_M-pyrifera_M_contig12145.4416.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
ELVTNCYNFPAETFSYTNNVKNTYGSSPHLPLDLGSSAVNFTLHDTTGLP
WNLDDALKAGKGKPVALIWG
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mRNA from alignment at M-pyrifera_M_contig12145:1084..1293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12145.4416.1 ID=mRNA_M-pyrifera_M_contig12145.4416.1|Name=mRNA_M-pyrifera_M_contig12145.4416.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig12145:1084..1293- (Macrocystis pyrifera P11B4 male)
GAGCTGGTCACTAATTGCTACAACTTTCCGGCTGAAACTTTCAGCTACAC
CAACAACGTCAAGAACACGTACGGGAGCAGTCCGCACCTCCCTCTGGACC
TGGGGTCCTCCGCCGTCAACTTTACGTTGCACGATACCACCGGGCTCCCG
TGGAACCTCGACGATGCGTTGAAAGCGGGCAAGGGGAAGCCTGTGGCGTT
GATTTGGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12145:1084..1293-

>mRNA_M-pyrifera_M_contig12145.4416.1 ID=mRNA_M-pyrifera_M_contig12145.4416.1|Name=mRNA_M-pyrifera_M_contig12145.4416.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig12145:1084..1293- (Macrocystis pyrifera P11B4 male)
GAGCTGGTCACTAATTGCTACAACTTTCCGGCTGAAACTTTCAGCTACAC
CAACAACGTCAAGAACACGTACGGGAGCAGTCCGCACCTCCCTCTGGACC
TGGGGTCCTCCGCCGTCAACTTTACGTTGCACGATACCACCGGGCTCCCG
TGGAACCTCGACGATGCGTTGAAAGCGGGCAAGGGGAAGCCTGTGGCGTT
GATTTGGGGAGAGCTGGTCACTAATTGCTACAACTTTCCGGCTGAAACTT
TCAGCTACACCAACAACGTCAAGAACACGTACGGGAGCAGTCCGCACCTC
CCTCTGGACCTGGGGTCCTCCGCCGTCAACTTTACGTTGCACGATACCAC
CGGGCTCCCGTGGAACCTCGACGATGCGTTGAAAGCGGGCAAGGGGAAGC
CTGTGGCGTTGATTTGGGGA
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