mRNA_M-pyrifera_M_contig121446.4414.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121446.4414.1
Unique NamemRNA_M-pyrifera_M_contig121446.4414.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121446.4414.1 vs. uniprot
Match: A0A2D9C5Y4_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9C5Y4_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 3.410e-12
Identity = 65/183 (35.52%), Postives = 89/183 (48.63%), Query Frame = 1 
Query:    1 AGIGKFADTTTVTGDDAARLSNMGVHLVSANPD-ISEPQLPLNELPEPDAA---PAVDPDASTSADTDEEPLLDDSADEQRLQEILDEAKRRAEEAKENATEQLDDLTETVIPESPAPAGATDPADDGTLGLLE-LSYTMLSVQQTTTKATASDFPDPMRVRNVYRVALMLDRCADPGLTAES 534
            AG GK   T  V+GDDAARL+NMGV L    P  +++P                P +  +  T  D  E+ + D   D   LQE  +E  ++ EEA           TET  P S     +T+ A   ++G    L   ++ VQ TT    ASDFPDPM  + +Y +ALM+ + ADPGLT +S
Sbjct:   27 AGTGKLMGTMQVSGDDAARLANMGVVLNPVTPPALADPXXXXXXXXXXXXXXXLPDLTDEPETPLDAVEDGVEDTMTD---LQEQANEVIKKIEEA-----------TETPTPPSTGGDESTNEAGVESIGFNPMLDARIVRVQNTTGDRAASDFPDPMECQRLYSIALMISKAADPGLTEDS 195
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BLAST of mRNA_M-pyrifera_M_contig121446.4414.1 vs. uniprot
Match: A0A2A4RPG6_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RPG6_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 6.740e-9
Identity = 63/195 (32.31%), Postives = 81/195 (41.54%), Query Frame = 1 
Query:    1 AGIGKFADTTTVTGDDAARLSNMGVHLVSANPDISEPQLPLNEL---------PEPDAAPAVDPDASTSADTDEEPLLDDSADEQRLQEILDEAKRRAEEAKENATEQLDDLTETVIPESPAPAGATDPADDGTLGLLELS--------YTMLSVQQTTTKATASDFPDPMRVRNVYRVALMLDRCADPGLTAES 534
            AG GK   T  VTG+DAARL+N+GV      PD+  PQ P  +          PEP A P       T+A   +EP+ D                       E A EQ DD TET+                      EL           + S+Q   T   A+DFPD M V+ VY +ALM+ + +DPGLT +S
Sbjct:   66 AGTGKLVGTYAVTGNDAARLANIGVMPTEPVPDL--PQAPDTDXXXXXXXXXXPEPTAPPP------TNA---QEPITD---------------------LVEPAAEQFDDATETIEQMIXXXXXXXXXXXXXXXXASELQNXXXXXXXXDLHSIQYAGTTYAATDFPDDMEVKQVYSIALMILKASDPGLTEDS 228
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BLAST of mRNA_M-pyrifera_M_contig121446.4414.1 vs. uniprot
Match: A0A812Y8A8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Y8A8_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 2.130e-6
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 1 
Query:  202 LLDDSADEQRLQEILDEAKRRAEEAKENATEQLDDLTETVIPESPAPAGATDPADDGTLGLLELSY------TMLSVQQTTTKATASDFPDPMRVRNVYRVALMLDRCADPGLTAES 534
            L D  AD+    ++ DE      E+  +  EQ+DDL E+  P++P  A      +   +   EL          + V Q+T  A  SD+PDP+R++NVY++ L+LD    PGLT +S
Sbjct:   54 LPDSPADQDTESDLPDEPVNPLPESDSDVQEQIDDL-ESQPPQTPTEADPEATQESTEVDAPELRAFNTQQPQFVHVVQSTAPAVGSDYPDPVRIKNVYKITLLLDHATSPGLTEDS 169
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121446.4414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2D9C5Y4_9BACT3.410e-1235.52Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A2A4RPG6_9BACT6.740e-932.31Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A812Y8A8_9DINO2.130e-633.33Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121446contigM-pyrifera_M_contig121446:1..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.723466-CDS-M-pyrifera_M_contig121446:0..5341622815733.723466-CDS-M-pyrifera_M_contig121446:0..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121446 1..534 +
1692277544.004852-CDS-M-pyrifera_M_contig121446:0..5341692277544.004852-CDS-M-pyrifera_M_contig121446:0..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121446 1..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121446.4414.1prot_M-pyrifera_M_contig121446.4414.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121446 1..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121446.4414.1

>prot_M-pyrifera_M_contig121446.4414.1 ID=prot_M-pyrifera_M_contig121446.4414.1|Name=mRNA_M-pyrifera_M_contig121446.4414.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
AGIGKFADTTTVTGDDAARLSNMGVHLVSANPDISEPQLPLNELPEPDAA
PAVDPDASTSADTDEEPLLDDSADEQRLQEILDEAKRRAEEAKENATEQL
DDLTETVIPESPAPAGATDPADDGTLGLLELSYTMLSVQQTTTKATASDF
PDPMRVRNVYRVALMLDRCADPGLTAES
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mRNA from alignment at M-pyrifera_M_contig121446:1..534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121446.4414.1 ID=mRNA_M-pyrifera_M_contig121446.4414.1|Name=mRNA_M-pyrifera_M_contig121446.4414.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig121446:1..534+ (Macrocystis pyrifera P11B4 male)
GCAGGCATCGGCAAGTTCGCCGACACGACGACTGTCACAGGCGACGACGC
TGCTCGCTTGAGCAATATGGGTGTCCATCTCGTCTCTGCGAATCCCGATA
TCAGCGAGCCGCAGCTGCCTCTGAACGAGTTGCCTGAGCCGGATGCGGCG
CCGGCTGTCGATCCAGACGCGAGCACGAGCGCCGACACAGACGAGGAACC
CCTGCTCGACGACTCTGCTGATGAGCAGCGTCTGCAGGAGATCCTCGACG
AAGCGAAGCGACGCGCCGAGGAAGCGAAGGAGAACGCGACAGAGCAGCTC
GACGATCTCACAGAGACTGTGATCCCCGAATCCCCAGCTCCAGCTGGCGC
GACGGATCCCGCCGACGACGGCACGCTCGGACTTCTCGAGCTGTCCTATA
CGATGCTGAGTGTGCAGCAGACGACGACAAAAGCGACGGCATCAGACTTC
CCGGATCCCATGCGCGTGCGCAATGTGTATCGTGTCGCGCTGATGCTCGA
TCGCTGCGCCGATCCTGGACTCACTGCTGAATCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121446:1..534+

>mRNA_M-pyrifera_M_contig121446.4414.1 ID=mRNA_M-pyrifera_M_contig121446.4414.1|Name=mRNA_M-pyrifera_M_contig121446.4414.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig121446:1..534+ (Macrocystis pyrifera P11B4 male)
GCAGGCATCGGCAAGTTCGCCGACACGACGACTGTCACAGGCGACGACGC
TGCTCGCTTGAGCAATATGGGTGTCCATCTCGTCTCTGCGAATCCCGATA
TCAGCGAGCCGCAGCTGCCTCTGAACGAGTTGCCTGAGCCGGATGCGGCG
CCGGCTGTCGATCCAGACGCGAGCACGAGCGCCGACACAGACGAGGAACC
CCTGCTCGACGACTCTGCTGATGAGCAGCGTCTGCAGGAGATCCTCGACG
AAGCGAAGCGACGCGCCGAGGAAGCGAAGGAGAACGCGACAGAGCAGCTC
GACGATCTCACAGAGACTGTGATCCCCGAATCCCCAGCTCCAGCTGGCGC
GACGGATCCCGCCGACGACGGCACGCTCGGACTTCTCGAGCTGTCCTATA
CGATGCTGAGTGTGCAGCAGACGACGACAAAAGCGACGGCATCAGACTTC
CCGGATCCCATGCGCGTGCGCAATGTGTATCGTGTCGCGCTGATGCTCGA
TCGCTGCGCCGATCCTGGACTCACTGCTGAATCGGCAGGCATCGGCAAGT
TCGCCGACACGACGACTGTCACAGGCGACGACGCTGCTCGCTTGAGCAAT
ATGGGTGTCCATCTCGTCTCTGCGAATCCCGATATCAGCGAGCCGCAGCT
GCCTCTGAACGAGTTGCCTGAGCCGGATGCGGCGCCGGCTGTCGATCCAG
ACGCGAGCACGAGCGCCGACACAGACGAGGAACCCCTGCTCGACGACTCT
GCTGATGAGCAGCGTCTGCAGGAGATCCTCGACGAAGCGAAGCGACGCGC
CGAGGAAGCGAAGGAGAACGCGACAGAGCAGCTCGACGATCTCACAGAGA
CTGTGATCCCCGAATCCCCAGCTCCAGCTGGCGCGACGGATCCCGCCGAC
GACGGCACGCTCGGACTTCTCGAGCTGTCCTATACGATGCTGAGTGTGCA
GCAGACGACGACAAAAGCGACGGCATCAGACTTCCCGGATCCCATGCGCG
TGCGCAATGTGTATCGTGTCGCGCTGATGCTCGATCGCTGCGCCGATCCT
GGACTCACTGCTGAATCG
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