mRNA_M-pyrifera_M_contig121428.4408.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121428.4408.1
Unique NamemRNA_M-pyrifera_M_contig121428.4408.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Match: A0A3D5DG24_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DG24_9GAMM)

HSP 1 Score: 164 bits (414), Expect = 7.960e-48
Identity = 80/132 (60.61%), Postives = 97/132 (73.48%), Query Frame = 1
Query:   16 RVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAFVYAYEGNGTLADKELPTHALATLSDGGALAVHATDALRFILVAGRPLREPVVQYGPFVMNSRAEIEQAFADYRDGKLVLKRAAWVSD 411
            RVISG+   +KGPI+DP+T+V Y DVAL P A F++EL + M AF+Y Y+GNG +A+  +PTH LA LS      V ATD LRFILVAGRP+ EP+VQYGPFVM+SR EIEQA  DY DG  V  +A WVSD
Sbjct:  139 RVISGSYGNYKGPIEDPNTNVHYLDVALLPRANFSYELPETMTAFIYPYQGNGKIANTTVPTHTLACLSSDERFEVSATDELRFILVAGRPIGEPIVQYGPFVMSSREEIEQAVNDYHDGTFVRTKARWVSD 270          
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Match: A0A1F6V218_9PROT (Uncharacterized protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_60_9 TaxID=1817755 RepID=A0A1F6V218_9PROT)

HSP 1 Score: 149 bits (376), Expect = 6.170e-42
Identity = 73/136 (53.68%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    4 GCRTRVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAFVYAYEGNGTLADKELPTHALATLSDGGALAVHA-TDALRFILVAGRPLREPVVQYGPFVMNSRAEIEQAFADYRDGKLVLKRAAWVS 408
            GCR +VI+G     +GPI DP+T++ YFDVAL+ G+ F+  +  D+ AFVY +EG+ T+ D ELP  +LA L DG ++ + +     RFILVAGRPL+EP+VQYGPFVM SR EIE+AF DY + +LV KRA  VS
Sbjct:  149 GCRVKVIAGQHQDTRGPIIDPNTEILYFDVALQAGSKFSQPIAPDVTAFVYLFEGDATIGDTELPWDSLAVLDDGDSVDIRSGASGARFILVAGRPLKEPIVQYGPFVMTSREEIERAFHDYSNNRLVQKRAQIVS 284          
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Match: A0A1Q4GTB8_9PROT (Uncharacterized protein n=1 Tax=Thiobacillus sp. 65-29 TaxID=1895862 RepID=A0A1Q4GTB8_9PROT)

HSP 1 Score: 147 bits (372), Expect = 2.460e-41
Identity = 79/133 (59.40%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    4 GCRTRVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAFVYAYEGNGTLADKELPTHALATLSDGGALAVHAT-DALRFILVAGRPLREPVVQYGPFVMNSRAEIEQAFADYRDGKLVLKRAA 399
            G R RV++G      G I+DP TDV Y DV LE G  F   L  D  AFVY +EG+ TLA + LP H LA L  G   A+ A  +  RFILVAGRP+ EPVVQYGPFVMN R EIEQAFADYRDGKLV  RAA
Sbjct:  149 GARVRVLAGEYDDVHGVIEDPETDVLYLDVRLEAGRRFESPLAGDRNAFVYVFEGDATLAGEALPRHTLAVLGKGEGFAIDAGGEGARFILVAGRPIGEPVVQYGPFVMNRREEIEQAFADYRDGKLVRTRAA 281          
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Match: A0A257SVX5_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium 21-64-14 TaxID=1970504 RepID=A0A257SVX5_9GAMM)

HSP 1 Score: 147 bits (371), Expect = 3.470e-41
Identity = 72/135 (53.33%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    1 PGCRTRVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAFVYAYEGNGTLADKELPTHALATLSDGGALAVHATDA-LRFILVAGRPLREPVVQYGPFVMNSRAEIEQAFADYRDGKLVLKRAAW 402
            PG R R++SGT    +GP+DDPHTDV Y  V LEP A F   L  D  AFVY +EG   +A   +P H LA L  G  + V +      F+LVAGRPL EP+VQYGPFVMN+RAEIE+A AD+  G+LV ++AAW
Sbjct:  148 PGARIRLLSGTHDDQRGPVDDPHTDVCYLHVTLEPNATFAAPLAADRNAFVYGFEGEAVVAGTPIPRHTLAVLGPGDRVEVRSGGGGAGFLLVAGRPLGEPIVQYGPFVMNTRAEIEEAMADFHAGRLVRRKAAW 282          
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Match: A0A259EG09_9PROT (Uncharacterized protein n=1 Tax=Hydrogenophilales bacterium 17-61-9 TaxID=1970524 RepID=A0A259EG09_9PROT)

HSP 1 Score: 144 bits (362), Expect = 7.760e-40
Identity = 76/131 (58.02%), Postives = 89/131 (67.94%), Query Frame = 1
Query:   10 RTRVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAFVYAYEGNGTLADKELPTHALATLSDGGALAVHA-TDALRFILVAGRPLREPVVQYGPFVMNSRAEIEQAFADYRDGKLVLKRAA 399
            R RV++G   G  G I+DP TDV Y DVAL   A F+  L +   AFVY +EG+  LA  +L TH LA L  G  + + A  +  RFILVAGRP+ EPVVQYGPFVMN+RAEIEQA ADYRDGKLV  RAA
Sbjct:  151 RVRVLAGEFKGTHGVIEDPSTDVLYLDVALPAHAAFSLPLDESRHAFVYVFEGSARLAGDDLATHTLAVLGSGDTMDIAAGANGARFILVAGRPIGEPVVQYGPFVMNTRAEIEQAMADYRDGKLVQTRAA 281          
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Match: A0A5C7RLV3_9PROT (Pirin family protein n=1 Tax=Thiobacillus sp. TaxID=924 RepID=A0A5C7RLV3_9PROT)

HSP 1 Score: 142 bits (359), Expect = 2.180e-39
Identity = 76/132 (57.58%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    4 GCRTRVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAFVYAYEGNGTLADKELPTHALATLSDGGALAVHATDA-LRFILVAGRPLREPVVQYGPFVMNSRAEIEQAFADYRDGKLVLKRA 396
            G R RV++G L G +G IDDP TDV Y DV L   A FT  L D   AFVY +EG+  LA ++L TH LA L  G  + + A  A  RF+LVAGRP+ EPVVQYGPFVMN+R EIEQAFADY+ G+LV  RA
Sbjct:  149 GARVRVLAGELNGTRGVIDDPSTDVRYLDVTLVADARFTLPLDDTHNAFVYVFEGSAQLAGEDLATHTLAVLGAGDTVDIQAGAAGARFVLVAGRPIGEPVVQYGPFVMNTRTEIEQAFADYQAGRLVQARA 280          
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Match: A0A7Y8SWD6_9PROT (Pirin family protein n=1 Tax=Hydrogenophilaceae bacterium TaxID=2723029 RepID=A0A7Y8SWD6_9PROT)

HSP 1 Score: 142 bits (358), Expect = 3.080e-39
Identity = 73/132 (55.30%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    4 GCRTRVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAFVYAYEGNGTLADKELPTHALATLSDGGALAVHATDA-LRFILVAGRPLREPVVQYGPFVMNSRAEIEQAFADYRDGKLVLKRA 396
            G R R+++G   G  GPI DP+T V Y DV+LE G  F+ EL     AFVY +EG+ +L   ELP H LA L  G ++ + A +A  RFILVAG PL EP+VQYGPFVMNSR EIEQA  DYRD +LV K+A
Sbjct:  149 GVRVRLLAGEYGGKSGPIADPNTKVQYLDVSLEAGVAFSRELDPAATAFVYVFEGSASLDGSELPQHRLAVLGAGDSVELTAGEAGARFILVAGLPLNEPIVQYGPFVMNSREEIEQAMQDYRDDRLVQKKA 280          
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Match: A0A426QLZ0_9GAMM (Pirin family protein n=1 Tax=Thiohalobacter thiocyanaticus TaxID=585455 RepID=A0A426QLZ0_9GAMM)

HSP 1 Score: 141 bits (356), Expect = 6.150e-39
Identity = 70/132 (53.03%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    4 GCRTRVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAFVYAYEGNGTLADKELPTHALATLSDGGALAVHA-TDALRFILVAGRPLREPVVQYGPFVMNSRAEIEQAFADYRDGKLVLKRA 396
            G + +V+SG  AG +GP++DPHT V Y DV L  G  F HEL   + AFVY +EG    A   LP H LA    G  L + A +D  RFILVAGRP+ EP+ QYGPFVMN++ EI QA  DYRDG+LV +RA
Sbjct:  149 GMQVKVLSGEYAGLRGPVEDPHTQVQYLDVTLAAGRRFEHELTGTLNAFVYVFEGTAEQAGTHLPRHTLAVPGKGETLTLEAGSDGARFILVAGRPIGEPIAQYGPFVMNTQEEIHQAMRDYRDGRLVQQRA 280          
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Match: A0A258TQ35_9PROT (Uncharacterized protein n=1 Tax=Hydrogenophilales bacterium 28-61-23 TaxID=1970530 RepID=A0A258TQ35_9PROT)

HSP 1 Score: 140 bits (354), Expect = 1.200e-38
Identity = 71/132 (53.79%), Postives = 89/132 (67.42%), Query Frame = 1
Query:   10 RTRVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAFVYAYEGNGTLADKELPTHALATLSDGGALAVHA-TDALRFILVAGRPLREPVVQYGPFVMNSRAEIEQAFADYRDGKLVLKRAAW 402
            R RV++G  AG +G IDDPH+D+ Y DV L+P  VF   L     AFVY YEG   +    LP H+L+ L  G ++ + A  +  RFILVAGRP+ E VVQYGPFVMN+RAEIEQA  DYRDG+LV  +AA+
Sbjct:  151 RVRVLAGEYAGQRGVIDDPHSDLLYLDVTLQPDRVFDAPLASARRAFVYVYEGGALIEAAHLPQHSLSVLGQGDSVRMTAGPEGARFILVAGRPIGEAVVQYGPFVMNTRAEIEQAMRDYRDGRLVRVKAAF 282          
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Match: A0A1Q4ELH2_9PROT (Uncharacterized protein n=3 Tax=unclassified Thiobacillus TaxID=2646513 RepID=A0A1Q4ELH2_9PROT)

HSP 1 Score: 140 bits (354), Expect = 1.230e-38
Identity = 74/132 (56.06%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    4 GCRTRVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAFVYAYEGNGTLADKELPTHALATLSDGGALAVHA-TDALRFILVAGRPLREPVVQYGPFVMNSRAEIEQAFADYRDGKLVLKRA 396
            G R RV++G L   +G I+DP TDV Y DV+L+ GA F+  L D   AFVY +EG   LAD+ L TH LA L  G  + + A +   RFILVAGRP+ EPVVQYGPFVMN+R EI+QAFADY  G+LV  RA
Sbjct:  149 GARVRVLAGELGDTRGVIEDPATDVRYLDVSLQAGARFSVPLSDTHNAFVYVFEGGARLADEVLATHNLAVLGPGDTMDIEAGSSGARFILVAGRPIGEPVVQYGPFVMNTRDEIKQAFADYEAGQLVQARA 280          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121428.4408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DG24_9GAMM7.960e-4860.61Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1F6V218_9PROT6.170e-4253.68Uncharacterized protein n=1 Tax=Candidatus Muprote... [more]
A0A1Q4GTB8_9PROT2.460e-4159.40Uncharacterized protein n=1 Tax=Thiobacillus sp. 6... [more]
A0A257SVX5_9GAMM3.470e-4153.33Uncharacterized protein n=1 Tax=Chromatiales bacte... [more]
A0A259EG09_9PROT7.760e-4058.02Uncharacterized protein n=1 Tax=Hydrogenophilales ... [more]
A0A5C7RLV3_9PROT2.180e-3957.58Pirin family protein n=1 Tax=Thiobacillus sp. TaxI... [more]
A0A7Y8SWD6_9PROT3.080e-3955.30Pirin family protein n=1 Tax=Hydrogenophilaceae ba... [more]
A0A426QLZ0_9GAMM6.150e-3953.03Pirin family protein n=1 Tax=Thiohalobacter thiocy... [more]
A0A258TQ35_9PROT1.200e-3853.79Uncharacterized protein n=1 Tax=Hydrogenophilales ... [more]
A0A1Q4ELH2_9PROT1.230e-3856.06Uncharacterized protein n=3 Tax=unclassified Thiob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121428contigM-pyrifera_M_contig121428:3..416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score147.1
Seed ortholog evalue5.9e-33
Seed eggNOG ortholog1123393.KB891327_gene348
Preferred nameyhhW
KEGG koko:K06911
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pirin C-terminal cupin domain
EggNOG OGs1KSY4@119069,1MWIP@1224,2VHGK@28216,COG1741@1,COG1741@2
COG Functional cat.S
Best tax levelHydrogenophilales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.4980235-CDS-M-pyrifera_M_contig121428:2..4161622815733.4980235-CDS-M-pyrifera_M_contig121428:2..416Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121428 3..416 +
1692277543.905591-CDS-M-pyrifera_M_contig121428:2..4161692277543.905591-CDS-M-pyrifera_M_contig121428:2..416Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121428 3..416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121428.4408.1prot_M-pyrifera_M_contig121428.4408.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121428 3..416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121428.4408.1

>prot_M-pyrifera_M_contig121428.4408.1 ID=prot_M-pyrifera_M_contig121428.4408.1|Name=mRNA_M-pyrifera_M_contig121428.4408.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
PGCRTRVISGTLAGHKGPIDDPHTDVTYFDVALEPGAVFTHELRDDMAAF
VYAYEGNGTLADKELPTHALATLSDGGALAVHATDALRFILVAGRPLREP
VVQYGPFVMNSRAEIEQAFADYRDGKLVLKRAAWVSD*
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mRNA from alignment at M-pyrifera_M_contig121428:3..416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121428.4408.1 ID=mRNA_M-pyrifera_M_contig121428.4408.1|Name=mRNA_M-pyrifera_M_contig121428.4408.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig121428:3..416+ (Macrocystis pyrifera P11B4 male)
CCGGGTTGCCGGACGCGTGTGATCAGCGGCACGCTTGCAGGCCACAAAGG CCCGATCGATGACCCGCATACCGATGTTACGTATTTCGATGTGGCGCTCG AACCCGGCGCGGTGTTCACGCACGAGCTCCGGGACGACATGGCAGCGTTT GTTTACGCTTACGAAGGAAACGGTACGCTCGCCGACAAAGAGCTACCCAC GCACGCGCTCGCAACACTATCCGATGGCGGTGCGTTGGCGGTGCATGCAA CCGACGCATTACGTTTCATACTCGTCGCCGGTCGCCCATTGCGGGAACCG GTAGTGCAATACGGCCCGTTCGTGATGAACTCGCGCGCAGAAATCGAACA GGCCTTCGCGGACTACCGCGACGGCAAGCTCGTCCTCAAGCGCGCGGCGT GGGTGAGCGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121428:3..416+

>mRNA_M-pyrifera_M_contig121428.4408.1 ID=mRNA_M-pyrifera_M_contig121428.4408.1|Name=mRNA_M-pyrifera_M_contig121428.4408.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig121428:3..416+ (Macrocystis pyrifera P11B4 male)
CCGGGTTGCCGGACGCGTGTGATCAGCGGCACGCTTGCAGGCCACAAAGG
CCCGATCGATGACCCGCATACCGATGTTACGTATTTCGATGTGGCGCTCG
AACCCGGCGCGGTGTTCACGCACGAGCTCCGGGACGACATGGCAGCGTTT
GTTTACGCTTACGAAGGAAACGGTACGCTCGCCGACAAAGAGCTACCCAC
GCACGCGCTCGCAACACTATCCGATGGCGGTGCGTTGGCGGTGCATGCAA
CCGACGCATTACGTTTCATACTCGTCGCCGGTCGCCCATTGCGGGAACCG
GTAGTGCAATACGGCCCGTTCGTGATGAACTCGCGCGCAGAAATCGAACA
GGCCTTCGCGGACTACCGCGACGGCAAGCTCGTCCTCAAGCGCGCGGCGT
GGGTGAGCGACTGACCGGGTTGCCGGACGCGTGTGATCAGCGGCACGCTT
GCAGGCCACAAAGGCCCGATCGATGACCCGCATACCGATGTTACGTATTT
CGATGTGGCGCTCGAACCCGGCGCGGTGTTCACGCACGAGCTCCGGGACG
ACATGGCAGCGTTTGTTTACGCTTACGAAGGAAACGGTACGCTCGCCGAC
AAAGAGCTACCCACGCACGCGCTCGCAACACTATCCGATGGCGGTGCGTT
GGCGGTGCATGCAACCGACGCATTACGTTTCATACTCGTCGCCGGTCGCC
CATTGCGGGAACCGGTAGTGCAATACGGCCCGTTCGTGATGAACTCGCGC
GCAGAAATCGAACAGGCCTTCGCGGACTACCGCGACGGCAAGCTCGTCCT
CAAGCGCGCGGCGTGGGTGAGCGACTGA
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