mRNA_M-pyrifera_M_contig121381.4394.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121381.4394.1
Unique NamemRNA_M-pyrifera_M_contig121381.4394.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Match: A0A7S4I5M7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I5M7_9EUKA)

HSP 1 Score: 142 bits (357), Expect = 3.600e-38
Identity = 63/121 (52.07%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   43 DVDVVVSGGGMKGYYVVGAWSVLRHLIKKGVIRVRRWAGASVGACSAMYMCCDVEPLRWAATYFECRAYLIGTGGSVTQSFNEVSHRILPDNAAELCSGKVFVSITHMTLTGPKNVVVSDF 405
            ++DVV+SGGG KG+++VG WSVLR +I +  + V+RWAG SVGA  A+YMCC V+P+ W+ TY+  R  + G G S+ ++F  +S+ +LPDNA ELC+ KVF+SIT +T  GPKN+++S F
Sbjct:   45 EIDVVLSGGGFKGFFLVGVWSVLRGMIAQKKLEVKRWAGTSVGAGCAVYMCCGVDPVVWSNTYWRSRRLIRGGGLSINEAFGVLSNDVLPDNAHELCTDKVFLSITLLTAFGPKNMIISKF 165          
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Match: A0A482SSY3_9ARCH (PNPLA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSY3_9ARCH)

HSP 1 Score: 91.7 bits (226), Expect = 9.250e-20
Identity = 44/133 (33.08%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   22 RDEEAPLDVDVVVSGGGMKGYYVVGAWSVLRHLIKKGVIRVRRWAGASVGACSAMYMCCDVEPLRWAATYFECRAYLIGTGGSVTQSFNEV-----SHRILPDNAAELCSGKVFVSITHMTLTGPKNVVVSDF 405
            ++++  +++DVV+SGGG+KGY+V G   +++H  ++  I++ R AGAS GA   ++M  +     W  TY+ C+     T   + ++++++     SH  +P+NA ++CSG++F+SIT +T  G KN ++S++
Sbjct:   60 QNQKPAVEIDVVISGGGLKGYFVTGCSHIMKHEFERQNIKIARVAGASAGAWCGLFMLTNFSTENWIETYYLCKERPEMT---MHEAYDDIWPWVSSH--MPENAYKICSGRLFISITEVTWFGFKNHMISEY 187          
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Match: A0A7S0XCA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCA7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.050e-18
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   82 YYVVGAWSVLRHLIKKGVIRVRRWAGASVGACSAMYMCCDVEPLRWAATYFECRAYLIGTGGSVTQSFNEVSHRILPDNAAELCSGKVFVSITHMTLTGPKNVVVSDF 405
            Y++ G  ++L   ++K  I++ R +GAS GA +AM+M C V    W  TY  C+         V +     +  +LP +A ++CSG++F+SIT +T+TGPKN ++SDF
Sbjct:    1 YFMAGCSAILLSELRKNKIKIARISGASAGAWAAMFMICGVSTSTWMETYHACKENQNKLIHDVYEHEYRRTGDMLPPDAYKICSGRLFISITVLTVTGPKNRIISDF 108          
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Match: A0A3M6U3A3_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U3A3_POCDA)

HSP 1 Score: 69.7 bits (169), Expect = 3.240e-11
Identity = 44/142 (30.99%), Postives = 76/142 (53.52%), Query Frame = 1
Query:    4 VAMEGVR-DEEAPLDVDVVVSGGGMKGYYVVGAWSVLRHLIKKGVIRVRRWAGASVGACSA--MYMCCDVEPLRWAATYFECRAYLIGTGG-----SVTQSFNEVSHRILPDNAAELCSGKVFVSITHMTLTGPKNVVVSDF 405
            V ++G   D E+  ++++  SG G  G Y +G  S L       + RV+ + GAS GA +A  + M  D+  +  +      RA  +  G       V ++  +   R+LPDNA E+ +G++ +S++ +TLTG KNV++S+F
Sbjct:  518 VVLDGYETDVESEFNLNLTFSGCGFLGIYHIGVMSCLEQNASSFLGRVKCFGGASAGAFAAVGLVMNLDISDIVESVLRLGKRANSLSLGPFHPSFQVVKTVRKAFDRMLPDNAHEIATGRLHISLSQVTLTGFKNVIISEF 659          
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Match: UPI000F552F4B (patatin-like phospholipase domain-containing protein 1 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F552F4B)

HSP 1 Score: 66.6 bits (161), Expect = 3.560e-10
Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = 1
Query:   43 DVDVVVSGGGMKGYYVVGAWSVLRHLIKKGVIRVRRWAGASVGACSA--MYMCCDVEPLRWAATYFECRAYLIGTGG-----SVTQSFNEVSHRILPDNAAELCSGKVFVSITHMTLTGPKNVVVSDF 405
            D+++  SG G  G Y +G  S L       + RV+ + GAS GA +A  + M  D+  +  +      RA  +  G       V ++  +   R+LPDNA E+ +G++ +S++ +TLTG KNV++S+F
Sbjct:    6 DLNLTFSGCGFLGIYHIGVMSCLEQNASSFLGRVKCFGGASAGAFAAVGLVMNLDISDIVESVLRLGKRANSLSLGPFHPSFQVVKTVRKAFDRMLPDNAHEIATGRLHISLSQVTLTGFKNVIISEF 133          
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Match: A0A2B4SGW9_STYPI (Patatin-like phospholipase domain-containing protein 2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SGW9_STYPI)

HSP 1 Score: 65.1 bits (157), Expect = 1.210e-9
Identity = 40/128 (31.25%), Postives = 70/128 (54.69%), Query Frame = 1
Query:   43 DVDVVVSGGGMKGYYVVGAWSVLRHLIKKGVIRVRRWAGASVGACSA--MYMCCDVEPLRWAATYFECRAYLIGTGG-----SVTQSFNEVSHRILPDNAAELCSGKVFVSITHMTLTGPKNVVVSDF 405
            D+++  SG G  G Y +G  S L+      + RV+ + GAS GA +A  + M  DV  +  +      RA  +  G       + ++  +   ++LPDNA E+ +G++ +S++ +TLTG KNV++S+F
Sbjct:    6 DLNLTFSGCGFLGIYHIGVMSCLKQNATSLLGRVKCFGGASAGAFAAVGLVMNLDVSDIVESVLRLGKRANSLSLGPFHPSFQIVKTVRKAFDQMLPDNAHEIATGRLHISLSQVTLTGFKNVIISEF 133          
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Match: UPI00077FA690 (patatin-like phospholipase domain-containing protein 2 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FA690)

HSP 1 Score: 57.4 bits (137), Expect = 6.240e-7
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   46 VDVVVSGGGMKGYYVVGAWSVLRHLIKKGVIRVRRWAGASVGACSAMYMCCDVEPLRWAATYF----ECRAYLIGTGG---SVTQSFNEVSHRILPDNAAELCSGKVFVSITHMTLTGPKNVVVSDF 405
            +++  +G G  G Y VG  S  R      V  V R AGASVG+ +A  + CDV   +            R+  +G      ++ Q+  E   + LP+NA ++CSG++F+S+T  +    KNV++S F
Sbjct:    4 INLSFAGCGFLGIYHVGVASCFREYAPHAV--VSRIAGASVGSVAAAALICDVSLGQTTTDILGIAGRARSLTLGALSPRFNLNQTLREKLEKALPENAHQICSGRLFISVTRWS--DKKNVLLSQF 126          
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Match: UPI0009E3B4D2 (patatin-like phospholipase domain-containing protein 2 isoform X2 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E3B4D2)

HSP 1 Score: 57.0 bits (136), Expect = 7.770e-7
Identity = 38/132 (28.79%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   31 EAPLDVDVVVSGGGMKGYYVVGAWSVLRHLIKKGVIRVRRWAGASVGACSAMYMCCDVEPLRWAATYFEC--RAYLIGTGG-----SVTQSFNEVSHRILPDNAAELCSGKVFVSITHMTLTGPKNVVVSDF 405
            E   D+++  SG G  G Y +G  S L+      + RV+ + GAS GA +A+ +  D++    A +      RA  +  G       + ++      ++LP+NA EL SG++ +S+TH+     +NV++S+F
Sbjct:    2 EDTQDLNLTFSGCGFLGMYHIGVMSCLKQNAAGFLRRVKCFGGASAGAFAAVGLIVDLDISEVAESVIRLGKRAKSLSLGPLHPSFEIVRTIRRAFEKMLPENAHELASGRLHISLTHVP--DCQNVIISEF 131          
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Match: UPI0009E5E310 (uncharacterized protein LOC110058485 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5E310)

HSP 1 Score: 57.0 bits (136), Expect = 7.790e-7
Identity = 38/132 (28.79%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   31 EAPLDVDVVVSGGGMKGYYVVGAWSVLRHLIKKGVIRVRRWAGASVGACSAMYMCCDVEPLRWAATYFEC--RAYLIGTGG-----SVTQSFNEVSHRILPDNAAELCSGKVFVSITHMTLTGPKNVVVSDF 405
            E   D+++  SG G  G Y +G  S L+      + RV+ + GAS GA +A+ +  D++    A +      RA  +  G       + ++      ++LP+NA EL SG++ +S+TH+     +NV++S+F
Sbjct:    2 EDTQDLNLTFSGCGFLGMYHIGVMSCLKQNAAGFLRRVKCFGGASAGAFAAVGLIVDLDISEVAESVIRLGKRAKSLSLGPLHPSFEIVRTIRRAFEKMLPENAHELASGRLHISLTHVP--DCQNVIISEF 131          
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Match: UPI0009E5D872 (uncharacterized protein LOC110058360 isoform X1 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5D872)

HSP 1 Score: 57.0 bits (136), Expect = 8.200e-7
Identity = 38/132 (28.79%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   31 EAPLDVDVVVSGGGMKGYYVVGAWSVLRHLIKKGVIRVRRWAGASVGACSAMYMCCDVEPLRWAATYFEC--RAYLIGTGG-----SVTQSFNEVSHRILPDNAAELCSGKVFVSITHMTLTGPKNVVVSDF 405
            E   D+++  SG G  G Y +G  S L+      + RV+ + GAS GA +A+ +  D++    A +      RA  +  G       + ++      ++LP+NA EL SG++ +S+TH+     +NV++S+F
Sbjct:    2 EDTQDLNLTFSGCGFLGMYHIGVMSCLKQNAAGFLRRVKCFGGASAGAFAAVGLIVDLDISEVAESVIRLGKRAKSLSLGPLHPSFEIVRTIRRAFEKMLPENAHELASGRLHISLTHVP--DCQNVIISEF 131          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121381.4394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A7S4I5M7_9EUKA3.600e-3852.07Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A482SSY3_9ARCH9.250e-2033.08PNPLA domain-containing protein n=1 Tax=archaeon T... [more]
A0A7S0XCA7_9STRA6.050e-1837.04Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A3M6U3A3_POCDA3.240e-1130.99Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
UPI000F552F4B3.560e-1032.03patatin-like phospholipase domain-containing prote... [more]
A0A2B4SGW9_STYPI1.210e-931.25Patatin-like phospholipase domain-containing prote... [more]
UPI00077FA6906.240e-731.50patatin-like phospholipase domain-containing prote... [more]
UPI0009E3B4D27.770e-728.79patatin-like phospholipase domain-containing prote... [more]
UPI0009E5E3107.790e-728.79uncharacterized protein LOC110058485 n=1 Tax=Orbic... [more]
UPI0009E5D8728.200e-728.79uncharacterized protein LOC110058360 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121381contigM-pyrifera_M_contig121381:90..494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.7480764-UTR-M-pyrifera_M_contig121381:89..981622815732.7480764-UTR-M-pyrifera_M_contig121381:89..98Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121381 90..98 +
1692277543.52676-UTR-M-pyrifera_M_contig121381:89..981692277543.52676-UTR-M-pyrifera_M_contig121381:89..98Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121381 90..98 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.7599967-CDS-M-pyrifera_M_contig121381:98..4941622815732.7599967-CDS-M-pyrifera_M_contig121381:98..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121381 99..494 +
1692277543.5374796-CDS-M-pyrifera_M_contig121381:98..4941692277543.5374796-CDS-M-pyrifera_M_contig121381:98..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121381 99..494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121381.4394.1prot_M-pyrifera_M_contig121381.4394.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121381 99..494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121381.4394.1

>prot_M-pyrifera_M_contig121381.4394.1 ID=prot_M-pyrifera_M_contig121381.4394.1|Name=mRNA_M-pyrifera_M_contig121381.4394.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MEGVRDEEAPLDVDVVVSGGGMKGYYVVGAWSVLRHLIKKGVIRVRRWAG
ASVGACSAMYMCCDVEPLRWAATYFECRAYLIGTGGSVTQSFNEVSHRIL
PDNAAELCSGKVFVSITHMTLTGPKNVVVSDF
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mRNA from alignment at M-pyrifera_M_contig121381:90..494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121381.4394.1 ID=mRNA_M-pyrifera_M_contig121381.4394.1|Name=mRNA_M-pyrifera_M_contig121381.4394.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig121381:90..494+ (Macrocystis pyrifera P11B4 male)
CCGGTGGCGATGGAGGGCGTGCGCGACGAGGAGGCGCCGCTCGACGTCGA CGTGGTGGTGAGCGGCGGCGGCATGAAGGGCTACTACGTGGTGGGCGCCT GGAGCGTGCTGCGGCACCTCATCAAGAAGGGCGTGATCCGCGTGCGCCGC TGGGCCGGCGCATCGGTGGGCGCCTGCTCGGCCATGTACATGTGCTGCGA CGTGGAGCCGCTGCGCTGGGCCGCCACCTACTTCGAGTGCAGGGCATACC TCATTGGCACCGGCGGCAGTGTCACGCAGTCCTTCAACGAAGTCTCCCAC CGCATTCTGCCCGACAACGCCGCCGAGCTCTGCAGTGGCAAGGTCTTCGT CAGCATTACACACATGACCCTCACCGGCCCTAAGAACGTCGTTGTCTCCG ACTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121381:90..494+

>mRNA_M-pyrifera_M_contig121381.4394.1 ID=mRNA_M-pyrifera_M_contig121381.4394.1|Name=mRNA_M-pyrifera_M_contig121381.4394.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig121381:90..494+ (Macrocystis pyrifera P11B4 male)
ATGGAGGGCGTGCGCGACGAGGAGGCGCCGCTCGACGTCGACGTGGTGGT
GAGCGGCGGCGGCATGAAGGGCTACTACGTGGTGGGCGCCTGGAGCGTGC
TGCGGCACCTCATCAAGAAGGGCGTGATCCGCGTGCGCCGCTGGGCCGGC
GCATCGGTGGGCGCCTGCTCGGCCATGTACATGTGCTGCGACGTGGAGCC
GCTGCGCTGGGCCGCCACCTACTTCGAGTGCAGGGCATACCTCATTGGCA
CCGGCGGCAGTGTCACGCAGTCCTTCAACGAAGTCTCCCACCGCATTCTG
CCCGACAACGCCGCCGAGCTCTGCAGTGGCAAGGTCTTCGTCAGCATTAC
ACACATGACCCTCACCGGCCCTAAGAACGTCGTTGTCTCCGACTTTATGG
AGGGCGTGCGCGACGAGGAGGCGCCGCTCGACGTCGACGTGGTGGTGAGC
GGCGGCGGCATGAAGGGCTACTACGTGGTGGGCGCCTGGAGCGTGCTGCG
GCACCTCATCAAGAAGGGCGTGATCCGCGTGCGCCGCTGGGCCGGCGCAT
CGGTGGGCGCCTGCTCGGCCATGTACATGTGCTGCGACGTGGAGCCGCTG
CGCTGGGCCGCCACCTACTTCGAGTGCAGGGCATACCTCATTGGCACCGG
CGGCAGTGTCACGCAGTCCTTCAACGAAGTCTCCCACCGCATTCTGCCCG
ACAACGCCGCCGAGCTCTGCAGTGGCAAGGTCTTCGTCAGCATTACACAC
ATGACCCTCACCGGCCCTAAGAACGTCGTTGTCTCCGACTTT
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