mRNA_M-pyrifera_M_contig121369.4391.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121369.4391.1
Unique NamemRNA_M-pyrifera_M_contig121369.4391.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Match: A0A3F3I2J4_9BACT (Serine hydrolase n=7 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3F3I2J4_9BACT)

HSP 1 Score: 190 bits (483), Expect = 7.420e-57
Identity = 88/130 (67.69%), Postives = 106/130 (81.54%), Query Frame = 1
Query:    1 KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINNRRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENKIGICILFNSPSSYALQVIPEFFKEFTPKNI 390
            KYYNAIS+GGINAS + MG WLL+LTG  PE+IS ETLN+I+EP ATINN+RFSRYWD VNES Y +GWR L+N+ QKI+YHGGYVNG+RSEIAF  E+ +GIC+L N+ SSY LQVIP  F+ F   +I
Sbjct:  267 KYYNAISSGGINASASDMGKWLLLLTGYYPEIISKETLNEIYEPLATINNKRFSRYWDSVNESHYGMGWRVLDNEGQKIVYHGGYVNGYRSEIAFSPEDGVGICVLINANSSYPLQVIPGLFEYFRTDSI 396          
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Match: A0A1B6Y6Z2_9BACT (Beta-lactamase domain-containing protein n=1 Tax=Balneola sp. EhC07 TaxID=1849360 RepID=A0A1B6Y6Z2_9BACT)

HSP 1 Score: 189 bits (479), Expect = 2.800e-56
Identity = 88/125 (70.40%), Postives = 103/125 (82.40%), Query Frame = 1
Query:    1 KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINNRRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENKIGICILFNSPSSYALQVIPEFFKEF 375
            KYYNAIS+GGINAS + MG WL +LTG  PE+IS+ETLN IFEP ATINN+RFSRYWD VN+S Y +GWR L+N+ QKI+YHGGYVNG+RSEIAFD  N IGIC+L N+ SSY LQVIP  F+ F
Sbjct:  267 KYYNAISSGGINASASDMGQWLRLLTGYYPEIISEETLNVIFEPVATINNKRFSRYWDGVNKSHYGMGWRVLDNEGQKIVYHGGYVNGYRSEIAFDPANGIGICVLINANSSYPLQVIPGLFEHF 391          
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Match: A0A6I7QGD5_9BACT (Class A beta-lactamase-related serine hydrolase (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7QGD5_9BACT)

HSP 1 Score: 186 bits (472), Expect = 4.890e-55
Identity = 84/127 (66.14%), Postives = 104/127 (81.89%), Query Frame = 1
Query:    1 KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINNRRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENKIGICILFNSPSSYALQVIPEFFKEFTP 381
            KYYNA+S+GGINAS + MG WLL+LTGNNPE+IS+ETL+ I++P A + NRRFSR+W  VNES Y +GWR L+N  QKI+YHGGYVNG+RSEIAF  E+ +GICIL N+ SSY L+VIP+FF  F P
Sbjct:  290 KYYNAVSSGGINASASDMGKWLLLLTGNNPEVISEETLDYIYDPLAYLQNRRFSRHWVGVNESHYGMGWRVLDNHGQKIVYHGGYVNGYRSEIAFSPEDGVGICILINANSSYPLEVIPDFFNHFKP 416          
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Match: A0A521DBA0_9BACT (Beta-lactamase class C n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521DBA0_9BACT)

HSP 1 Score: 183 bits (465), Expect = 1.400e-54
Identity = 81/125 (64.80%), Postives = 102/125 (81.60%), Query Frame = 1
Query:    1 KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINNRRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENKIGICILFNSPSSYALQVIPEFFKEF 375
            KYYNA+S+GGINAS + MG WLLMLTG  PE++S+ TL Q+FEP AT+NNRRFSRYW+ VN S+Y +GWR L+N  Q+++YHGGYVNG+RSEIAF  E+ +GICIL N+ S Y L+VIP+FF  F
Sbjct:  228 KYYNAVSSGGINASASDMGKWLLMLTGYRPEVLSEGTLGQMFEPIATLNNRRFSRYWEGVNRSYYGMGWRVLDNHGQRVVYHGGYVNGYRSEIAFAPEDDLGICILINTNSGYPLEVIPDFFNHF 352          
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Match: UPI001F239CAB (beta-lactamase family protein n=1 Tax=Rhodohalobacter sp. 614A TaxID=2908649 RepID=UPI001F239CAB)

HSP 1 Score: 182 bits (461), Expect = 1.480e-53
Identity = 81/130 (62.31%), Postives = 106/130 (81.54%), Query Frame = 1
Query:    1 KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINNRRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENKIGICILFNSPSSYALQVIPEFFKEFTPKNI 390
            KYYNAIS+GGINAS + MG WLL+LTG++PE+IS + L +IF+P ATI+NRR+SRYW+ VNES+Y +GWR L+N  Q+I+YHGGYVNG+RSEIAF  E+ +GICIL N+ SSY L V+P+FF  F   ++
Sbjct:  268 KYYNAISSGGINASASDMGKWLLLLTGHHPEIISGKRLEEIFDPLATIHNRRYSRYWEGVNESYYGMGWRVLDNHGQRIVYHGGYVNGYRSEIAFAPEDGVGICILINTHSSYPLTVMPDFFDHFKSNSV 397          
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Match: A0A3M8G787_9BACT (Class A beta-lactamase-related serine hydrolase n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G787_9BACT)

HSP 1 Score: 180 bits (456), Expect = 3.380e-53
Identity = 80/124 (64.52%), Postives = 100/124 (80.65%), Query Frame = 1
Query:    1 KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINNRRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENKIGICILFNSPSSYALQVIPEFFKE 372
            KYYNA+SAGGINASI+ MG WL +L G +P +I    L++I+ P ATINN+RFSRYWD VNES Y +GWR L N +QKI+YHGGYVNG+RSEIAFDKE + GICIL N+PS + L++IP +F+E
Sbjct:  237 KYYNAVSAGGINASISDMGKWLQLLVGKHPNIIHPNVLDEIYTPIATINNKRFSRYWDGVNESHYGMGWRVLYNGSQKIVYHGGYVNGYRSEIAFDKETQTGICILINAPSRFPLEIIPAYFEE 360          
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Match: A0A316U0Q6_9BACT (Serine hydrolase n=2 Tax=Rhodohalobacter mucosus TaxID=2079485 RepID=A0A316U0Q6_9BACT)

HSP 1 Score: 181 bits (460), Expect = 3.440e-53
Identity = 81/130 (62.31%), Postives = 105/130 (80.77%), Query Frame = 1
Query:    1 KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINNRRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENKIGICILFNSPSSYALQVIPEFFKEFTPKNI 390
            KYYNA+S+GGINAS + MG W+L+LTGN P++IS+ETL++IF P A INNRRFSR+W+ VN S Y +GWR L+N  QK++YHGGYVNG+RSEIAF   + +GICIL N+ SSY L+VIP+FF  F  ++I
Sbjct:  286 KYYNAVSSGGINASASDMGKWMLLLTGNAPDVISNETLDEIFNPLADINNRRFSRHWNGVNRSHYAMGWRVLDNHGQKVVYHGGYVNGYRSEIAFAPADGVGICILINTSSSYPLEVIPDFFNYFRNEDI 415          
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Match: A0A6M1SRU1_9BACT (Beta-lactamase family protein n=2 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1SRU1_9BACT)

HSP 1 Score: 180 bits (456), Expect = 8.040e-53
Identity = 80/125 (64.00%), Postives = 103/125 (82.40%), Query Frame = 1
Query:    1 KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINNRRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENKIGICILFNSPSSYALQVIPEFFKEF 375
            KYYNA+S+GG+NAS + MG WLL+LTG++PE+IS++TL +I+EP  TI+NRRFSR+W  V ES Y +GWR L+N  QK++YHGGYVNG+RSEIAF  E++IGICIL N+ SSY L VIP+FF  F
Sbjct:  267 KYYNAVSSGGVNASASDMGKWLLLLTGHHPEVISEQTLEEIYEPLVTIHNRRFSRHWKGVPESHYGMGWRVLDNHGQKVVYHGGYVNGYRSEIAFAPEDEIGICILINTSSSYPLTVIPDFFNHF 391          
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Match: A0A371QHD0_9BACT (Class A beta-lactamase-related serine hydrolase n=2 Tax=Rhodohalobacter sp. SW132 TaxID=2293433 RepID=A0A371QHD0_9BACT)

HSP 1 Score: 180 bits (456), Expect = 8.620e-53
Identity = 82/125 (65.60%), Postives = 102/125 (81.60%), Query Frame = 1
Query:    1 KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINNRRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENKIGICILFNSPSSYALQVIPEFFKEF 375
            KYYNA+S+GGINAS + MG WLL+LTG++PE+IS ETL +I+ P ATI+NRR+SRYW  VN+S Y +GWR L+N  QKI+YHGGYVNG+RSEIAFD E  +GI IL N+ SSY L+VIP+FF  F
Sbjct:  270 KYYNAVSSGGINASASDMGKWLLLLTGHHPEVISAETLEEIYSPFATIHNRRYSRYWQGVNKSHYGMGWRVLDNHGQKIVYHGGYVNGYRSEIAFDPETGVGISILVNTNSSYPLEVIPDFFNHF 394          
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Match: A0A1M5CKG2_9BACT (Beta-lactamase class C n=2 Tax=Aliifodinibius roseus TaxID=1194090 RepID=A0A1M5CKG2_9BACT)

HSP 1 Score: 180 bits (456), Expect = 1.580e-52
Identity = 81/125 (64.80%), Postives = 102/125 (81.60%), Query Frame = 1
Query:    1 KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINNRRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENKIGICILFNSPSSYALQVIPEFFKEF 375
            KYYNA+S+GGINAS + MG WLL+LTG++PE+IS+ TL +I++P  TI+NRR+SRYW  VNES Y +GWR L+N  QKI+YHGGYVNG+RSEIAF  E+ +GICIL N+ SSY L VIP+FF  F
Sbjct:  297 KYYNAVSSGGINASASDMGKWLLLLTGHHPEVISENTLQEIYDPFVTIHNRRYSRYWSGVNESHYGMGWRVLDNHGQKIVYHGGYVNGYRSEIAFAPEDGLGICILINTSSSYPLTVIPDFFNYF 421          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121369.4391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3F3I2J4_9BACT7.420e-5767.69Serine hydrolase n=7 Tax=Bacteroidetes/Chlorobi gr... [more]
A0A1B6Y6Z2_9BACT2.800e-5670.40Beta-lactamase domain-containing protein n=1 Tax=B... [more]
A0A6I7QGD5_9BACT4.890e-5566.14Class A beta-lactamase-related serine hydrolase (F... [more]
A0A521DBA0_9BACT1.400e-5464.80Beta-lactamase class C n=1 Tax=Gracilimonas mengye... [more]
UPI001F239CAB1.480e-5362.31beta-lactamase family protein n=1 Tax=Rhodohalobac... [more]
A0A3M8G787_9BACT3.380e-5364.52Class A beta-lactamase-related serine hydrolase n=... [more]
A0A316U0Q6_9BACT3.440e-5362.31Serine hydrolase n=2 Tax=Rhodohalobacter mucosus T... [more]
A0A6M1SRU1_9BACT8.040e-5364.00Beta-lactamase family protein n=2 Tax=Balneolaceae... [more]
A0A371QHD0_9BACT8.620e-5365.60Class A beta-lactamase-related serine hydrolase n=... [more]
A0A1M5CKG2_9BACT1.580e-5264.80Beta-lactamase class C n=2 Tax=Aliifodinibius rose... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121369contigM-pyrifera_M_contig121369:3..392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score143.3
Seed ortholog evalue8.1e-32
Seed eggNOG ortholog760192.Halhy_0905
Preferred nameampC
KEGG rclassRC01499
KEGG koko:K01467
KEGG ReactionR06363
KEGG Pathwayko01501,ko02020,map01501,map02020
KEGG ModuleM00628
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COGs COG1680 Beta-lactamase class C and other penicillin binding protein
EggNOG OGs1INWP@117747,4NFUI@976,COG1680@1,COG1680@2
EC3.5.2.6
COG Functional cat.V
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.6281984-CDS-M-pyrifera_M_contig121369:2..3921622815732.6281984-CDS-M-pyrifera_M_contig121369:2..392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121369 3..392 +
1692277543.4649782-CDS-M-pyrifera_M_contig121369:2..3921692277543.4649782-CDS-M-pyrifera_M_contig121369:2..392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121369 3..392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121369.4391.1prot_M-pyrifera_M_contig121369.4391.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121369 3..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121369.4391.1

>prot_M-pyrifera_M_contig121369.4391.1 ID=prot_M-pyrifera_M_contig121369.4391.1|Name=mRNA_M-pyrifera_M_contig121369.4391.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
KYYNAISAGGINASIAYMGSWLLMLTGNNPELISDETLNQIFEPRATINN
RRFSRYWDDVNESFYVLGWRDLNNDNQKIIYHGGYVNGFRSEIAFDKENK
IGICILFNSPSSYALQVIPEFFKEFTPKNI
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mRNA from alignment at M-pyrifera_M_contig121369:3..392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121369.4391.1 ID=mRNA_M-pyrifera_M_contig121369.4391.1|Name=mRNA_M-pyrifera_M_contig121369.4391.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig121369:3..392+ (Macrocystis pyrifera P11B4 male)
AAATATTACAATGCAATTTCTGCTGGAGGAATAAATGCTTCTATCGCCTA TATGGGGAGTTGGCTGTTGATGTTAACAGGCAATAATCCAGAATTGATTT CTGATGAAACTCTAAATCAAATATTTGAGCCAAGAGCTACGATTAATAAC CGTCGATTTAGTAGATATTGGGATGATGTAAACGAATCTTTCTATGTATT GGGCTGGCGAGACCTTAATAATGACAACCAAAAAATCATCTATCATGGTG GGTATGTAAATGGATTCAGAAGTGAAATCGCCTTTGATAAAGAAAACAAA ATTGGAATTTGTATTCTATTCAACTCTCCTTCAAGTTATGCCTTACAAGT AATTCCTGAGTTCTTCAAAGAATTCACACCAAAGAATATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121369:3..392+

>mRNA_M-pyrifera_M_contig121369.4391.1 ID=mRNA_M-pyrifera_M_contig121369.4391.1|Name=mRNA_M-pyrifera_M_contig121369.4391.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig121369:3..392+ (Macrocystis pyrifera P11B4 male)
AAATATTACAATGCAATTTCTGCTGGAGGAATAAATGCTTCTATCGCCTA
TATGGGGAGTTGGCTGTTGATGTTAACAGGCAATAATCCAGAATTGATTT
CTGATGAAACTCTAAATCAAATATTTGAGCCAAGAGCTACGATTAATAAC
CGTCGATTTAGTAGATATTGGGATGATGTAAACGAATCTTTCTATGTATT
GGGCTGGCGAGACCTTAATAATGACAACCAAAAAATCATCTATCATGGTG
GGTATGTAAATGGATTCAGAAGTGAAATCGCCTTTGATAAAGAAAACAAA
ATTGGAATTTGTATTCTATTCAACTCTCCTTCAAGTTATGCCTTACAAGT
AATTCCTGAGTTCTTCAAAGAATTCACACCAAAGAATATAAAATATTACA
ATGCAATTTCTGCTGGAGGAATAAATGCTTCTATCGCCTATATGGGGAGT
TGGCTGTTGATGTTAACAGGCAATAATCCAGAATTGATTTCTGATGAAAC
TCTAAATCAAATATTTGAGCCAAGAGCTACGATTAATAACCGTCGATTTA
GTAGATATTGGGATGATGTAAACGAATCTTTCTATGTATTGGGCTGGCGA
GACCTTAATAATGACAACCAAAAAATCATCTATCATGGTGGGTATGTAAA
TGGATTCAGAAGTGAAATCGCCTTTGATAAAGAAAACAAAATTGGAATTT
GTATTCTATTCAACTCTCCTTCAAGTTATGCCTTACAAGTAATTCCTGAG
TTCTTCAAAGAATTCACACCAAAGAATATA
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