mRNA_M-pyrifera_M_contig121276.4382.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121276.4382.1
Unique NamemRNA_M-pyrifera_M_contig121276.4382.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121276.4382.1 vs. uniprot
Match: A0A2D9C5S6_9BACT (Non-specific serine/threonine protein kinase n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9C5S6_9BACT)

HSP 1 Score: 145 bits (366), Expect = 1.840e-37
Identity = 72/161 (44.72%), Postives = 101/161 (62.73%), Query Frame = 1 
Query:    1 HNQLVVAAQNSDGNWVERGADEIWFGKYPVVIFAINPKIGENNRVIRHPGLPNGMDPLWYRCLMPGSAYSTLRVDRGVVGVNVNRPGLLKYRLKNLVEIQLGGKN--DGIGEHATMVIDHQGELVEVWAADTWKTQQNGLDPSVFTLEDLPRRTTEREFKP 477
            H+ + VAA+NSDG   +RG  E+   KYP VIFAI PKIGE  +VIRHPGL  GM+P+WY+CLMP  AY+T+  +   +G+++  P  +  R     EIQLG  +  D +G+   +++  +GE++  W  D+W     G    +FTL DLP RTT REF+P
Sbjct:  569 HSIMYVAAENSDGMLTDRGEKELDVAKYPYVIFAIRPKIGEMQQVIRHPGLGLGMEPIWYKCLMPIDAYTTVLKNALEIGIDLRAPHHIDDRNAGYFEIQLGAGSTQDTLGQ-VNLIVSPEGEILRSWHNDSWTGTNYGWTSEIFTLSDLPPRTTAREFEP 728
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BLAST of mRNA_M-pyrifera_M_contig121276.4382.1 vs. uniprot
Match: A0A7Y3XGE4_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y3XGE4_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 7.900e-6
Identity = 36/153 (23.53%), Postives = 64/153 (41.83%), Query Frame = 1 
Query:   10 LVVAAQNSDGNWVERGADEIWFGKY-PVVIFAINPKIGENNRVIRHPGLPNGMDPLWYRCLMPGSAYSTLRVDRGVVGVNVNRPGLLKYRLKNLVEIQLGGKNDGIGEHATMVIDHQGELVEVWAADTWKTQQNGLDPSVFTLEDLPRRTTER 465
            +V+A +NSDG W++RG D    GK  P V+  ++P++G   +V+   G    ++P WY  L+P      + + +               R+ ++    + G       H    +   G  +       W  + +  D S+  +  LP R TER
Sbjct:  543 IVLAGENSDGRWIDRGVDTA--GKSCPNVLVGVSPQLGVVGKVLSWSGFEGDLEPAWYHTLLPAELSICVSIGQAAFSATTLHSAATTVRI-DIPPSNMRGPGLYFDVHGDGTVSQPGTGLG------WDERLDLPDRSLLGVGPLPPRLTER 686
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121276.4382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D9C5S6_9BACT1.840e-3744.72Non-specific serine/threonine protein kinase n=2 T... [more]
A0A7Y3XGE4_9BACT7.900e-623.53Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121276contigM-pyrifera_M_contig121276:41..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.249694-CDS-M-pyrifera_M_contig121276:40..5201622815732.249694-CDS-M-pyrifera_M_contig121276:40..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121276 41..520 -
1692277543.2881398-CDS-M-pyrifera_M_contig121276:40..5201692277543.2881398-CDS-M-pyrifera_M_contig121276:40..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121276 41..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121276.4382.1prot_M-pyrifera_M_contig121276.4382.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121276 41..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121276.4382.1

>prot_M-pyrifera_M_contig121276.4382.1 ID=prot_M-pyrifera_M_contig121276.4382.1|Name=mRNA_M-pyrifera_M_contig121276.4382.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
HNQLVVAAQNSDGNWVERGADEIWFGKYPVVIFAINPKIGENNRVIRHPG
LPNGMDPLWYRCLMPGSAYSTLRVDRGVVGVNVNRPGLLKYRLKNLVEIQ
LGGKNDGIGEHATMVIDHQGELVEVWAADTWKTQQNGLDPSVFTLEDLPR
RTTEREFKP*
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mRNA from alignment at M-pyrifera_M_contig121276:41..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121276.4382.1 ID=mRNA_M-pyrifera_M_contig121276.4382.1|Name=mRNA_M-pyrifera_M_contig121276.4382.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig121276:41..520- (Macrocystis pyrifera P11B4 male)
CACAATCAGCTCGTCGTCGCAGCGCAGAACAGCGATGGGAACTGGGTCGA
ACGCGGAGCAGACGAAATCTGGTTCGGCAAATATCCAGTCGTCATTTTCG
CGATCAATCCAAAGATTGGCGAGAACAATCGCGTGATCCGTCATCCGGGA
CTCCCCAACGGGATGGATCCGCTGTGGTACCGCTGTCTCATGCCGGGATC
AGCATACAGCACGCTCCGAGTGGATCGAGGGGTCGTCGGGGTGAATGTGA
ATCGGCCCGGACTCCTGAAGTATCGCTTAAAGAATCTCGTTGAGATCCAA
CTCGGCGGCAAGAACGACGGGATCGGCGAGCACGCAACAATGGTCATCGA
TCATCAAGGGGAACTCGTAGAAGTCTGGGCGGCAGACACATGGAAGACCC
AACAAAATGGGCTCGATCCAAGTGTGTTCACGCTCGAAGATCTTCCGCGG
CGAACGACTGAGCGGGAATTTAAGCCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121276:41..520-

>mRNA_M-pyrifera_M_contig121276.4382.1 ID=mRNA_M-pyrifera_M_contig121276.4382.1|Name=mRNA_M-pyrifera_M_contig121276.4382.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig121276:41..520- (Macrocystis pyrifera P11B4 male)
CACAATCAGCTCGTCGTCGCAGCGCAGAACAGCGATGGGAACTGGGTCGA
ACGCGGAGCAGACGAAATCTGGTTCGGCAAATATCCAGTCGTCATTTTCG
CGATCAATCCAAAGATTGGCGAGAACAATCGCGTGATCCGTCATCCGGGA
CTCCCCAACGGGATGGATCCGCTGTGGTACCGCTGTCTCATGCCGGGATC
AGCATACAGCACGCTCCGAGTGGATCGAGGGGTCGTCGGGGTGAATGTGA
ATCGGCCCGGACTCCTGAAGTATCGCTTAAAGAATCTCGTTGAGATCCAA
CTCGGCGGCAAGAACGACGGGATCGGCGAGCACGCAACAATGGTCATCGA
TCATCAAGGGGAACTCGTAGAAGTCTGGGCGGCAGACACATGGAAGACCC
AACAAAATGGGCTCGATCCAAGTGTGTTCACGCTCGAAGATCTTCCGCGG
CGAACGACTGAGCGGGAATTTAAGCCGTAGCACAATCAGCTCGTCGTCGC
AGCGCAGAACAGCGATGGGAACTGGGTCGAACGCGGAGCAGACGAAATCT
GGTTCGGCAAATATCCAGTCGTCATTTTCGCGATCAATCCAAAGATTGGC
GAGAACAATCGCGTGATCCGTCATCCGGGACTCCCCAACGGGATGGATCC
GCTGTGGTACCGCTGTCTCATGCCGGGATCAGCATACAGCACGCTCCGAG
TGGATCGAGGGGTCGTCGGGGTGAATGTGAATCGGCCCGGACTCCTGAAG
TATCGCTTAAAGAATCTCGTTGAGATCCAACTCGGCGGCAAGAACGACGG
GATCGGCGAGCACGCAACAATGGTCATCGATCATCAAGGGGAACTCGTAG
AAGTCTGGGCGGCAGACACATGGAAGACCCAACAAAATGGGCTCGATCCA
AGTGTGTTCACGCTCGAAGATCTTCCGCGGCGAACGACTGAGCGGGAATT
TAAGCCGTAG
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