mRNA_M-pyrifera_M_contig121249.4379.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121249.4379.1
Unique NamemRNA_M-pyrifera_M_contig121249.4379.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121249.4379.1 vs. uniprot
Match: A0A5A8ED32_CAFRO (zf-Tim10_DDP domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ED32_CAFRO)

HSP 1 Score: 63.9 bits (154), Expect = 6.870e-12
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   25 RILDTCYVKCMEKNHVASMGELHIGELACLDRCVPKYLEAHTLAQAEFQKLTGAP 189
            R++  CY KC+ +      GEL +GE+ C+DRCVPKY E H + Q EFQ++   P
Sbjct:   27 RVMKACYAKCIARP--VRNGELELGEMTCIDRCVPKYFETHEMVQKEFQRMVQVP 79
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BLAST of mRNA_M-pyrifera_M_contig121249.4379.1 vs. uniprot
Match: F0VL53_NEOCL (Putative Tim10/DDP family zinc finger containing protein n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VL53_NEOCL)

HSP 1 Score: 48.9 bits (115), Expect = 4.850e-6
Identity = 28/66 (42.42%), Postives = 34/66 (51.52%), Query Frame = 1 
Query:    4 GFGILCCRILDTCYVKCMEKNHVASMGELHIGELACLDRCVPKYLEAHTLAQAEFQKLTGAPPEEK 201
            G   L  RI DTC+ KC+          L  GE +CLDRCV KY + HT+   E Q  T AP  +K
Sbjct:   13 GMADLYRRIQDTCWTKCVPN---VKEPTLDAGESSCLDRCVNKYTDVHTIVGKELQ--TNAPEAQK 73
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BLAST of mRNA_M-pyrifera_M_contig121249.4379.1 vs. uniprot
Match: S8GDE0_TOXGM (TIM10 family protein, putative n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S8GDE0_TOXGM)

HSP 1 Score: 47.8 bits (112), Expect = 1.510e-5
Identity = 27/58 (46.55%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:    4 GFGILCCRILDTCYVKCMEKNHVASMGE--LHIGELACLDRCVPKYLEAHTLAQAEFQ 171
            G   L  RI DTC+ KC     VA + E  L  GE +CLDRCV KY + HT+   E Q
Sbjct:   17 GMADLYRRIQDTCWTKC-----VADVKESTLDAGESSCLDRCVNKYTDVHTIVGKELQ 69
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BLAST of mRNA_M-pyrifera_M_contig121249.4379.1 vs. uniprot
Match: A0A6U0JD31_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JD31_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 1.870e-5
Identity = 24/58 (41.38%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:    1 EGFGILCCRILDTCYVKCMEKNHVASMGELHIGELACLDRCVPKYLEAHTLAQAEFQK 174
            E +  L  +I  TC+ KC  + H    G+L +GE+AC DRCV KY+EA        QK
Sbjct:   25 EMYADLFQKISGTCFEKCASRRH--RDGDLALGEMACTDRCVSKYMEAMEKVGVVLQK 80
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BLAST of mRNA_M-pyrifera_M_contig121249.4379.1 vs. uniprot
Match: A0A0G4FYK8_9ALVE (zf-Tim10_DDP domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FYK8_9ALVE)

HSP 1 Score: 46.2 bits (108), Expect = 9.900e-5
Identity = 20/58 (34.48%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:    1 EGFGILCCRILDTCYVKCMEKNHVASMGELHIGELACLDRCVPKYLEAHTLAQAEFQK 174
            +G   +  R+   C+ KC+     A    L+ GE++C+DRCV KY++ HTL  ++ Q+
Sbjct:   18 QGVSDMFTRMQRACFAKCIPG---AKESNLNFGEVSCVDRCVNKYVDVHTLVGSKLQE 72
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121249.4379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5A8ED32_CAFRO6.870e-1245.45zf-Tim10_DDP domain-containing protein n=1 Tax=Caf... [more]
F0VL53_NEOCL4.850e-642.42Putative Tim10/DDP family zinc finger containing p... [more]
S8GDE0_TOXGM1.510e-546.55TIM10 family protein, putative n=15 Tax=Toxoplasma... [more]
A0A6U0JD31_9STRA1.870e-541.38Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A0G4FYK8_9ALVE9.900e-534.48zf-Tim10_DDP domain-containing protein n=1 Tax=Chr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121249contigM-pyrifera_M_contig121249:265..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.1405127-CDS-M-pyrifera_M_contig121249:264..4711622815732.1405127-CDS-M-pyrifera_M_contig121249:264..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121249 265..471 -
1692277543.250967-CDS-M-pyrifera_M_contig121249:264..4711692277543.250967-CDS-M-pyrifera_M_contig121249:264..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121249 265..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121249.4379.1prot_M-pyrifera_M_contig121249.4379.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121249 265..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121249.4379.1

>prot_M-pyrifera_M_contig121249.4379.1 ID=prot_M-pyrifera_M_contig121249.4379.1|Name=mRNA_M-pyrifera_M_contig121249.4379.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
EGFGILCCRILDTCYVKCMEKNHVASMGELHIGELACLDRCVPKYLEAHT
LAQAEFQKLTGAPPEEKK*
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mRNA from alignment at M-pyrifera_M_contig121249:265..471-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121249.4379.1 ID=mRNA_M-pyrifera_M_contig121249.4379.1|Name=mRNA_M-pyrifera_M_contig121249.4379.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig121249:265..471- (Macrocystis pyrifera P11B4 male)
GAAGGGTTTGGAATTCTTTGTTGCAGAATTCTCGATACCTGCTACGTAAA
ATGCATGGAAAAGAACCATGTTGCATCAATGGGAGAGTTACATATTGGAG
AGTTGGCTTGTCTTGACAGATGTGTACCAAAATACCTCGAAGCGCACACA
TTGGCACAAGCTGAATTCCAAAAGCTCACAGGAGCGCCACCCGAAGAAAA
GAAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121249:265..471-

>mRNA_M-pyrifera_M_contig121249.4379.1 ID=mRNA_M-pyrifera_M_contig121249.4379.1|Name=mRNA_M-pyrifera_M_contig121249.4379.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig121249:265..471- (Macrocystis pyrifera P11B4 male)
GAAGGGTTTGGAATTCTTTGTTGCAGAATTCTCGATACCTGCTACGTAAA
ATGCATGGAAAAGAACCATGTTGCATCAATGGGAGAGTTACATATTGGAG
AGTTGGCTTGTCTTGACAGATGTGTACCAAAATACCTCGAAGCGCACACA
TTGGCACAAGCTGAATTCCAAAAGCTCACAGGAGCGCCACCCGAAGAAAA
GAAATGAGAAGGGTTTGGAATTCTTTGTTGCAGAATTCTCGATACCTGCT
ACGTAAAATGCATGGAAAAGAACCATGTTGCATCAATGGGAGAGTTACAT
ATTGGAGAGTTGGCTTGTCTTGACAGATGTGTACCAAAATACCTCGAAGC
GCACACATTGGCACAAGCTGAATTCCAAAAGCTCACAGGAGCGCCACCCG
AAGAAAAGAAATGA
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