mRNA_M-pyrifera_M_contig121245.4377.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121245.4377.1
Unique NamemRNA_M-pyrifera_M_contig121245.4377.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121245.4377.1 vs. uniprot
Match: A0A7X5WPS2_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WPS2_9ACTN)

HSP 1 Score: 167 bits (424), Expect = 1.650e-49
Identity = 81/117 (69.23%), Postives = 90/117 (76.92%), Query Frame = 1 
Query:    1 VWEVVDAIWPDDLRDALAQLSVVREESRGMVGVVHPSSTGGWILSLDVADLPDRALLEETIVHELSHVVTLDPDVFTFTQTDGCTGAAIELGCAAPGSVLAAFADEFWPGDVGSDAD 351
            +W VVD +WP  LRD LAQLSVVR E RG+VGVVHPS+ GGWI+SLD+ADL D AL+EETIVHELSHVVTL PDVFTF   D C G  I LGCAAPG+VLA FAD FW      +AD
Sbjct:   87 MWAVVDDVWPHHLRDRLAQLSVVRGEPRGLVGVVHPSAVGGWIISLDLADLDDLALVEETIVHELSHVVTLGPDVFTFGDVDECGGVQISLGCAAPGTVLAGFADRFWSPGSDEEAD 203
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BLAST of mRNA_M-pyrifera_M_contig121245.4377.1 vs. uniprot
Match: A0A6I2Y941_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I2Y941_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 7.910e-17
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = 1 
Query:    1 VWEVVDAIWPDDLRDALAQLSVVREESRGMVGVVHPSSTG--GWILSLDVADLPDRALLEETIVHELSHVVTLDPDVFTFTQTDG--CTGAAIELGCAAPGSVLAAFADEFWPG 330
            +W++V++  PDD   ++ Q++V+ +     +G+VH SS     W+LS+D A+  +  +L++T+VHE +H++TL  D  T        C G  IE+GCA  GS L A+ DEFW G
Sbjct:   95 LWDLVESTLPDDAVLSIRQMNVISDGRNATLGMVHRSSVAPDSWVLSIDPAETDE--VLQDTMVHEYAHMLTLRTDDLTSNAASRTRCDGLRIEIGCAKFGSALVAWHDEFWAG 206
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BLAST of mRNA_M-pyrifera_M_contig121245.4377.1 vs. uniprot
Match: A0A6G0A8B6_9ACTN (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A8B6_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 1.010e-7
Identity = 32/115 (27.83%), Postives = 54/115 (46.96%), Query Frame = 1 
Query:    1 VWEVVDAIWPDDLRDALAQLSVVREESRGMVGVVHPSST--GGWILSLDVADLPDRALLEETIVHELSHVVTLDPDVFTFTQTDGCTGAAIELG----CAAPGSVLAAFADEFWP 327
            +W     + P+   +A+    +  +  + ++G V P+S+    W L LD+ D   R     T+VHE+SH+++L+P        +G      +L     CA   S L A+ D FWP
Sbjct:   20 MWHFARELMPEATVEAMDTFVIFTDGRQNILGAVSPTSSDHSTWSLELDIVDSRYRQEFLHTVVHEISHLLSLEPGQIEDVSPNGQAECGEQLNLVDSCARADSYLQAWGDAFWP 134
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121245.4377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7X5WPS2_9ACTN1.650e-4969.23Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A6I2Y941_9ACTN7.910e-1737.72Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6G0A8B6_9ACTN1.010e-727.83Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121245contigM-pyrifera_M_contig121245:166..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.0366995-CDS-M-pyrifera_M_contig121245:165..5191622815732.0366995-CDS-M-pyrifera_M_contig121245:165..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121245 166..519 +
1692277543.2238772-CDS-M-pyrifera_M_contig121245:165..5191692277543.2238772-CDS-M-pyrifera_M_contig121245:165..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121245 166..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121245.4377.1prot_M-pyrifera_M_contig121245.4377.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121245 166..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121245.4377.1

>prot_M-pyrifera_M_contig121245.4377.1 ID=prot_M-pyrifera_M_contig121245.4377.1|Name=mRNA_M-pyrifera_M_contig121245.4377.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
VWEVVDAIWPDDLRDALAQLSVVREESRGMVGVVHPSSTGGWILSLDVAD
LPDRALLEETIVHELSHVVTLDPDVFTFTQTDGCTGAAIELGCAAPGSVL
AAFADEFWPGDVGSDADN
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mRNA from alignment at M-pyrifera_M_contig121245:166..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121245.4377.1 ID=mRNA_M-pyrifera_M_contig121245.4377.1|Name=mRNA_M-pyrifera_M_contig121245.4377.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig121245:166..519+ (Macrocystis pyrifera P11B4 male)
GTGTGGGAAGTTGTCGACGCGATCTGGCCCGACGATCTACGCGACGCGCT
CGCCCAGCTCTCGGTCGTGCGGGAGGAGTCACGCGGCATGGTCGGTGTCG
TGCACCCGTCGTCGACCGGTGGCTGGATCCTCAGCCTCGACGTCGCCGAC
CTTCCTGATCGCGCCCTGCTCGAGGAGACGATCGTCCACGAGCTCTCCCA
TGTGGTCACGCTCGACCCCGACGTCTTCACGTTCACCCAGACCGATGGCT
GCACGGGCGCCGCGATCGAGCTCGGCTGTGCCGCTCCCGGTTCGGTGCTC
GCCGCATTCGCCGACGAGTTCTGGCCGGGCGATGTCGGCAGCGACGCCGA
CAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121245:166..519+

>mRNA_M-pyrifera_M_contig121245.4377.1 ID=mRNA_M-pyrifera_M_contig121245.4377.1|Name=mRNA_M-pyrifera_M_contig121245.4377.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig121245:166..519+ (Macrocystis pyrifera P11B4 male)
GTGTGGGAAGTTGTCGACGCGATCTGGCCCGACGATCTACGCGACGCGCT
CGCCCAGCTCTCGGTCGTGCGGGAGGAGTCACGCGGCATGGTCGGTGTCG
TGCACCCGTCGTCGACCGGTGGCTGGATCCTCAGCCTCGACGTCGCCGAC
CTTCCTGATCGCGCCCTGCTCGAGGAGACGATCGTCCACGAGCTCTCCCA
TGTGGTCACGCTCGACCCCGACGTCTTCACGTTCACCCAGACCGATGGCT
GCACGGGCGCCGCGATCGAGCTCGGCTGTGCCGCTCCCGGTTCGGTGCTC
GCCGCATTCGCCGACGAGTTCTGGCCGGGCGATGTCGGCAGCGACGCCGA
CAATGTGTGGGAAGTTGTCGACGCGATCTGGCCCGACGATCTACGCGACG
CGCTCGCCCAGCTCTCGGTCGTGCGGGAGGAGTCACGCGGCATGGTCGGT
GTCGTGCACCCGTCGTCGACCGGTGGCTGGATCCTCAGCCTCGACGTCGC
CGACCTTCCTGATCGCGCCCTGCTCGAGGAGACGATCGTCCACGAGCTCT
CCCATGTGGTCACGCTCGACCCCGACGTCTTCACGTTCACCCAGACCGAT
GGCTGCACGGGCGCCGCGATCGAGCTCGGCTGTGCCGCTCCCGGTTCGGT
GCTCGCCGCATTCGCCGACGAGTTCTGGCCGGGCGATGTCGGCAGCGACG
CCGACAAT
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