mRNA_M-pyrifera_M_contig121221.4374.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121221.4374.1
Unique NamemRNA_M-pyrifera_M_contig121221.4374.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Match: UPI00200BDF4C (PX domain-containing protein kinase-like protein n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200BDF4C)

HSP 1 Score: 57.0 bits (136), Expect = 4.670e-7
Identity = 38/96 (39.58%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:   70 SRFTLYRLRVTLDVSGGGESGGEGGGGQASWTVTRRYREFAALHAHLCNA---LPSWEVESLPRLPPKTLTLLGSLEPSFVESRRVGLNRYIRGVL 348
            ++ T YRL+V    S            +  WTV+RRYR+FAALH+ L  A   LP         LPPK L  +G+++PSF+  R+V L  YI  VL
Sbjct:   31 NKHTEYRLQVQRGPSK-----------EIKWTVSRRYRDFAALHSVLQQANIDLP---------LPPKKL--IGNMQPSFIAERQVALQEYINAVL 104
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BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Match: Q6C375_YARLI (YALI0F02035p n=4 Tax=Yarrowia TaxID=4951 RepID=Q6C375_YARLI)

HSP 1 Score: 56.2 bits (134), Expect = 9.360e-7
Identity = 34/98 (34.69%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:   58 DTSGSRFTLYRLRVTLDVSGGGESGGEGGGGQASWTVTRRYREFAALHAHLCNALPSWEVESLPRLP-PKTLTLLGSLEPSFVESRRVGLNRYIRGVL 348
            D  G+ F +Y + VT      G+   + G   A+W V RRY  F  LH HL  + P      + R+P PK   ++   + SFV+SR+V L  Y+R +L
Sbjct: 1015 DKMGNEFVVYLVEVTRH----GDDSDKEGASSATWIVARRYSHFLQLHQHLIRSFPY-----ISRIPFPKKKVVIKFNQKSFVDSRKVQLEAYLRELL 1103
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BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Match: A0A6J1P7C1_BICAN (PX domain-containing protein kinase-like protein n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1P7C1_BICAN)

HSP 1 Score: 54.3 bits (129), Expect = 2.090e-6
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  160 WTVTRRYREFAALHAHLCNA---LPSWEVESLPRLPPKTLTLLGSLEPSFVESRRVGLNRYIRGVL 348
            WTV+RRYR+FAALH  L +A   LP         +PPK L  +G+++PSFV  R+V L  YI  VL
Sbjct:   50 WTVSRRYRDFAALHVSLQHANIDLP---------IPPKKL--IGNMQPSFVAERQVALQNYINEVL 104
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BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Match: A0A7S2WIJ2_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIJ2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.300e-6
Identity = 39/115 (33.91%), Postives = 53/115 (46.09%), Query Frame = 1 
Query:   13 PVGVDVRIVGTETREDTSGSRFTLYRLRVTLDVSGGGESGGEGGGGQASWTVTRRYREFAALHAHLCNALPSW---EVESLPRLPPKTLTLLGSLEPSFVESRRVGLNRYIRGVL 348
            P  +   IV ++   D  G  +T Y L V                G  SWTV RRY EFA LH  L   L      ++  LPRLP K L  +G+L    +E R+  L++YI+ +L
Sbjct:  413 PSPISASIVRSKLATDAQGQVYTQYELVVQQ--------------GNLSWTVLRRYSEFAGLHQSLQETLSLGGVVDIAVLPRLPAKKL--VGNLNDGHIEHRKEILDQYIKSLL 511
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BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Match: UPI000E6D71A6 (PX domain-containing protein kinase-like protein n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D71A6)

HSP 1 Score: 54.7 bits (130), Expect = 3.010e-6
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   70 SRFTLYRLRVTLDVSGGGESGGEGGGGQASWTVTRRYREFAALHAHLCNALPSWEVESLPRLPPKTLTLLGSLEPSFVESRRVGLNRYIRGVL 348
            ++ T Y LRV             G   +  W V+RRYR+FAALHA L +A     +E LP LPPK L  +G+++PSF+  R++ L  YI  VL
Sbjct:   31 NKHTEYILRVQ-----------RGPNKEDKWNVSRRYRDFAALHASLQSA----NIE-LP-LPPKKL--IGNMQPSFIAERQIALQTYINQVL 104
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BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Match: A0A5D6Y1I1_9STRA (PX domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1I1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.040e-6
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  148 GQASWTVTRRYREFAALHAHLCNALPSWEVESLPRLPPKTLTLLGSLEPSFVESRRVGLNRYIRGVL 348
            G+ SW VTRR+ +FAALHA L +A PS  +  LPR        L +L+  F+  R++ LN Y++ VL
Sbjct:  243 GEMSWQVTRRFNDFAALHARLADAAPSAVLPELPRT-----KWLCALDDDFLLERQLELNDYLKSVL 304
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BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Match: A0A6J1NAA4_BICAN (PX domain-containing protein kinase-like protein n=3 Tax=Satyrini TaxID=127320 RepID=A0A6J1NAA4_BICAN)

HSP 1 Score: 54.3 bits (129), Expect = 4.100e-6
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  160 WTVTRRYREFAALHAHLCNA---LPSWEVESLPRLPPKTLTLLGSLEPSFVESRRVGLNRYIRGVL 348
            WTV+RRYR+FAALH  L +A   LP         +PPK L  +G+++PSFV  R+V L  YI  VL
Sbjct:   50 WTVSRRYRDFAALHVSLQHANIDLP---------IPPKKL--IGNMQPSFVAERQVALQNYINEVL 104
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BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Match: H3GW86_PHYRM (PX domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GW86_PHYRM)

HSP 1 Score: 53.9 bits (128), Expect = 5.710e-6
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:   22 VDVRIVGTETR-EDTSGSRFTLYRLRVTLDVSGGGESGGEGGGGQASWTVTRRYREFAALHAHLCNALPSWEVESLPRLPPKTLTLLGSLEPSFVESRRVGLNRYIRGVL 348
            +D+ IVGT+++  D S   +T Y     +DVS  G          A W ++RRY+EF ALH+HL    P+ E   LP LPPK +     LE  FV  R+  L  +++ +L
Sbjct:  279 IDLAIVGTKSKVSDLSQRSYTSY----VIDVSFNG----------ALWQLSRRYKEFDALHSHLKKKYPTSE---LPGLPPKHV--FTPLEGEFVTHRKEQLEAFLKQLL 369
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BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Match: A0A7R9P7P4_TIMCA ((California timema) hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9P7P4_TIMCA)

HSP 1 Score: 52.0 bits (123), Expect = 1.340e-5
Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:   28 VRIVGTETREDTSGSRFTLYRLRVTLDVSGGGESGGEGGGGQASWTVTRRYREFAALHAHLCNALPSWEVESLPRLPPKTLTLLGSLEPSFVESRRVGLNRYIRGVL 348
            V +  TET E     +FT+Y++ VT D                SW V RRY EF  L+  L   +P  ++    +LP K L    +L+PSFV+SRR GL+ +I+ ++
Sbjct:   18 VSVENTETWEHDK--KFTVYKVMVTSDSQ--------------SWFVFRRYNEFYKLYESLKKQVPQLQL----KLPGKKL-FGNNLDPSFVQSRREGLDAFIQQLM 103
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BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Match: UPI001182C90C (Uncharacterized protein n=2 Tax=Manduca sexta TaxID=7130 RepID=UPI001182C90C)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-5
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  160 WTVTRRYREFAALHAHLCNALPSWEVESLPRLPPKTLTLLGSLEPSFVESRRVGLNRYIRGVL 348
            W+V+RRYR+FAALH+ L  A     +E LP LPPK L  +G+++PSF+  R++ L  YI  VL
Sbjct:   50 WSVSRRYRDFAALHSVLQQA----NIE-LP-LPPKKL--IGNMQPSFIAERQIALQNYINEVL 104
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121221.4374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
UPI00200BDF4C4.670e-739.58PX domain-containing protein kinase-like protein n... [more]
Q6C375_YARLI9.360e-734.69YALI0F02035p n=4 Tax=Yarrowia TaxID=4951 RepID=Q6C... [more]
A0A6J1P7C1_BICAN2.090e-648.48PX domain-containing protein kinase-like protein n... [more]
A0A7S2WIJ2_9STRA2.300e-633.91Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
UPI000E6D71A63.010e-640.86PX domain-containing protein kinase-like protein n... [more]
A0A5D6Y1I1_9STRA4.040e-643.28PX domain-containing protein n=1 Tax=Pythium brass... [more]
A0A6J1NAA4_BICAN4.100e-648.48PX domain-containing protein kinase-like protein n... [more]
H3GW86_PHYRM5.710e-636.36PX domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A7R9P7P4_TIMCA1.340e-534.58(California timema) hypothetical protein n=2 Tax=T... [more]
UPI001182C90C1.420e-549.21Uncharacterized protein n=2 Tax=Manduca sexta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121221contigM-pyrifera_M_contig121221:185..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog296587.XP_002501767.1
KEGG koko:K17925
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0006605,GO:0006622,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0008289,GO:0008333,GO:0010008,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016482,GO:0019898,GO:0031090,GO:0031312,GO:0031313,GO:0031410,GO:0031982,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042802,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045022,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098805,GO:0098927
EggNOG free text desc.Sorting nexin C terminal
EggNOG OGs34MA6@3041,37Q8N@33090,KOG2101@1,KOG2101@2759
COG Functional cat.DUZ
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size351
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.917475-CDS-M-pyrifera_M_contig121221:184..5351622815731.917475-CDS-M-pyrifera_M_contig121221:184..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121221 185..535 +
1692277543.1766844-CDS-M-pyrifera_M_contig121221:184..5351692277543.1766844-CDS-M-pyrifera_M_contig121221:184..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121221 185..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121221.4374.1prot_M-pyrifera_M_contig121221.4374.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121221 185..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121221.4374.1

>prot_M-pyrifera_M_contig121221.4374.1 ID=prot_M-pyrifera_M_contig121221.4374.1|Name=mRNA_M-pyrifera_M_contig121221.4374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
METGPVGVDVRIVGTETREDTSGSRFTLYRLRVTLDVSGGGESGGEGGGG
QASWTVTRRYREFAALHAHLCNALPSWEVESLPRLPPKTLTLLGSLEPSF
VESRRVGLNRYIRGVLG
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mRNA from alignment at M-pyrifera_M_contig121221:185..535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121221.4374.1 ID=mRNA_M-pyrifera_M_contig121221.4374.1|Name=mRNA_M-pyrifera_M_contig121221.4374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig121221:185..535+ (Macrocystis pyrifera P11B4 male)
ATGGAAACTGGTCCTGTTGGGGTGGATGTGAGGATTGTAGGCACGGAAAC
CAGAGAAGACACGTCTGGATCTCGGTTTACCCTTTACCGTCTTCGTGTGA
CTTTAGATGTCAGTGGAGGTGGAGAGAGTGGAGGGGAGGGGGGTGGAGGA
CAGGCATCATGGACTGTGACAAGGCGATATCGTGAATTTGCAGCACTGCA
TGCTCATTTGTGTAATGCTTTACCATCATGGGAGGTAGAATCCTTACCCC
GCTTACCACCAAAAACCTTGACACTGTTGGGTTCACTAGAACCATCATTT
GTGGAGAGTAGAAGAGTGGGTTTGAATCGTTATATTCGAGGTGTTCTTGG
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121221:185..535+

>mRNA_M-pyrifera_M_contig121221.4374.1 ID=mRNA_M-pyrifera_M_contig121221.4374.1|Name=mRNA_M-pyrifera_M_contig121221.4374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig121221:185..535+ (Macrocystis pyrifera P11B4 male)
ATGGAAACTGGTCCTGTTGGGGTGGATGTGAGGATTGTAGGCACGGAAAC
CAGAGAAGACACGTCTGGATCTCGGTTTACCCTTTACCGTCTTCGTGTGA
CTTTAGATGTCAGTGGAGGTGGAGAGAGTGGAGGGGAGGGGGGTGGAGGA
CAGGCATCATGGACTGTGACAAGGCGATATCGTGAATTTGCAGCACTGCA
TGCTCATTTGTGTAATGCTTTACCATCATGGGAGGTAGAATCCTTACCCC
GCTTACCACCAAAAACCTTGACACTGTTGGGTTCACTAGAACCATCATTT
GTGGAGAGTAGAAGAGTGGGTTTGAATCGTTATATTCGAGGTGTTCTTGG
AATGGAAACTGGTCCTGTTGGGGTGGATGTGAGGATTGTAGGCACGGAAA
CCAGAGAAGACACGTCTGGATCTCGGTTTACCCTTTACCGTCTTCGTGTG
ACTTTAGATGTCAGTGGAGGTGGAGAGAGTGGAGGGGAGGGGGGTGGAGG
ACAGGCATCATGGACTGTGACAAGGCGATATCGTGAATTTGCAGCACTGC
ATGCTCATTTGTGTAATGCTTTACCATCATGGGAGGTAGAATCCTTACCC
CGCTTACCACCAAAAACCTTGACACTGTTGGGTTCACTAGAACCATCATT
TGTGGAGAGTAGAAGAGTGGGTTTGAATCGTTATATTCGAGGTGTTCTTG
GA
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