mRNA_M-pyrifera_M_contig121212.4372.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121212.4372.1
Unique NamemRNA_M-pyrifera_M_contig121212.4372.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Match: A0A6P0RJF9_9CYAN (DUF4347 domain-containing protein n=1 Tax=Okeania sp. SIO3I5 TaxID=2607805 RepID=A0A6P0RJF9_9CYAN)

HSP 1 Score: 69.3 bits (168), Expect = 1.280e-10
Identity = 42/147 (28.57%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   55 SVTADGSKLCYTTIEALVPEDDDINQYDVYVYDWATGTPQLASVGTLGEGGHPNIVTPWISGDGRYVSFTTAQSAIIQPGLAQAGPHGDWQLWTKDLETGLLALVSVDDFGKPGWSPNDIDKARFGAGASLSADGGTLVFTSTYDSL 495
            ++++DG  + ++++   +   D  +  DV+V+D  TG   L SV + GE G+    TP ISGDGR+++F++    ++     +A       ++  D +TG+ +LVSV+  G+ G + +            +SADG  + F S  D+L
Sbjct:  197 AISSDGRFVAFSSVADNLVSGDTNDAQDVFVHDRQTGITSLVSVNSAGEVGNALSGTPSISGDGRFIAFSSTADNLVPEDTNEAR-----DIFVHDRQTGITSLVSVNSAGELGNTDSQFP--------IISADGSEIFFNSNADNL 330          
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Match: A0A5C6DHV4_9BACT (FG-GAP repeat protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6DHV4_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 4.870e-10
Identity = 56/172 (32.56%), Postives = 87/172 (50.58%), Query Frame = 1
Query:    1 IASGVTTERVFANLPRFLSVTADGSKLCYTTIEA----LVPEDDDINQYDVYVYDWATGTPQLASVGTLGEGGHPNIVTPWISGDGRYVSFTTAQSAIIQPGLAQAGPHGDWQLWTKDLETGLLALVSVDDFGKPGWSPNDIDKARFGAGASLSADGGTLVFTSTYDSLPHN 504
            +AS  T    F++LP   +++A+G    Y T E+    LVP D +I Q D++V++  TG  +LASV + G  G+     P IS DGRYVSF T  + ++         +G++ ++ +D  TG     SV   G    + +D D  R    + +S DG  +VF S   +L  N
Sbjct: 1333 VASDGTQANGFSSLP---AISANGQ---YVTFESHAYNLVPGDTNI-QRDIFVHNLQTGITELASVASDGTQGNRGGQRPSISADGRYVSFDTDATNLVD-----GDTNGEFDVFVRDRLTGTTTRASVSSTG----AQSDRDALR----SQISGDGRHVVFYSNATTLVAN 1484          
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Match: UPI001BA8DDC7 (PD40 domain-containing protein n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BA8DDC7)

HSP 1 Score: 67.0 bits (162), Expect = 7.480e-10
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   55 SVTADGSKLCYTTIEALVPEDDDINQYDVYVYDWATGTPQLASVGTLGEGGHPNIVTPWISGDGRYVSFTTAQSAIIQPGLAQAGPHGDWQLWTKDLETGLLALVSVDDFGKPGWSPNDIDKARFGAGASLSADGGTLVFTSTYDSL 495
            +++ADG  + Y ++ + + + D    YDV+V+D  TGT +  SV + GE G+    +P IS DGRYV++ +  S ++         +G   ++  + ET     VSV   G+ G      D   F +   +SADG  + ++ST  +L
Sbjct:  204 NISADGRYVTYFSLASNLVDGDTNGNYDVFVFDRETGTTERISVSSTGEQGNGTSFSPDISADGRYVTYYSDASNLVD-----GDTNGTNDIFVFERETATTERVSVSSTGEQG------DGGSFSS--DISADGRYVTYSSTAANL 337          
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Match: A0A1F8M5Q0_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium RBG_13_48_10 TaxID=1797620 RepID=A0A1F8M5Q0_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 2.630e-9
Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   55 SVTADGSKLCYTTIEALVPEDDDINQYDVYVYDWATGTPQLASVGTLGEGGHPNIVTPWISGDGRYVSFTTAQSAIIQPGLAQAGPHGDWQLWTKDLETGLLALVSVDDFGKPGWSPNDIDKARFGAGASLSADGGTLVFTSTYDSL 495
            S++ADG  + +T+  A + + D     DV+V D    +    S  + GE G+ +   P+IS DGRYV+FT+  + ++      +  +GD  ++  DL+TG   L+SV   GK G   ND+        +S+S+DG  +VF S   +L
Sbjct:   53 SISADGRYVAFTSEAANLVDKDLNGVMDVFVRDMVKKSTSRVSTSSTGEEGNLSSYWPFISADGRYVTFTSDANDLV---ATDSNSYGD--VFLHDLKTGKTDLISVATDGKSG---NDLS-----FWSSVSSDGRYVVFMSQASNL 186          
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Match: UPI0019BAF3A5 (Uncharacterized protein n=2 Tax=Deinococcus ruber TaxID=1848197 RepID=UPI0019BAF3A5)

HSP 1 Score: 65.5 bits (158), Expect = 2.690e-9
Identity = 44/156 (28.21%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   55 SVTADGSKLCYTTIEALVPEDDDINQYDVYVYDWATGTPQLASVGTLGEGGHPNIVT-PWISGDGRYVSFTTAQSAIIQPGLAQAGPHGDWQLWTKDLETGLLALVSVDDFGKPGWSPNDIDKARFGAGAS---LSADGGTLVFTSTYDSLPHNNV 510
            S++ DG  + +T+  A + + D  N  D++V D  TG     +  + G+     +   P ISG+GRYV+FT+    +         P  ++ ++ KD++TG L   S    G+P            G  AS   L+ DG  + FT+T D+L  N+ 
Sbjct:  434 SISNDGRYVAFTSEAANLIQGDSNNTKDIFVRDLQTGVTSRVNTSSTGQQVESGVSNEPSISGNGRYVAFTSLAQGL------DTLPSSNYNIYVKDIQTGALVRASTTSSGQP---------TPIGTNASSPCLNQDGTLIAFTTTADNLVANDT 574          
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Match: A0A3N0CAP8_9ACTN (Uncharacterized protein n=2 Tax=Marmoricola ginsengisoli TaxID=661483 RepID=A0A3N0CAP8_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 1.190e-8
Identity = 44/147 (29.93%), Postives = 70/147 (47.62%), Query Frame = 1
Query:   58 VTADGSKLCYTTIEALVPEDDDINQYDVYVYDWATGTPQLASVGTLGEGGHPNIVTPWISGDGRYVSFTTAQSAIIQPGLAQAGPHGDWQLWTKDLETGLLALVSVDDFGKP-GWSPNDIDKARFGAGASLSADGGTLVFTSTYDSL 495
            ++A+GS++ Y+T    +  DDD    DVYV+D  TG  +  S   LG   +     P IS DG YV + +  S ++         +G   ++ +++  G  A VSV   G+P G+S            A++SA G  + F S  D+L
Sbjct:  281 ISANGSRIAYSTDATTIDSDDDNGVSDVYVWDSGTGKSERVSEDVLGNDSNGASYAPSISADGAYVGYQSNASDLVI-----GDSNGTADVYRRNIAAGTNARVSVATSGQPNGYSTQ----------AAVSATGRYVAFASQADNL 412          
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Match: A0A2V2R5Z7_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V2R5Z7_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.770e-8
Identity = 49/138 (35.51%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  103 LVPEDDDINQYDVYVYDWATGTPQLASVGTLGEG-GHPNIVTPWISGDGRYVSFTTAQSAIIQPGLAQAGPHGDWQLWTKDLETGLLALVSVDDFGKPGWSPNDIDKARFGAGASLSADGGTLVFTSTYDSLPHNNVG 513
            LV   D  N  DV+V D  T T +L SV   G   G+ N   P ISGDGR+V+FT++ + +I      +GP    Q + +DL+  +  LV+ + FG  G +  DID  R     ++S DG  + F S    L  N+ G
Sbjct:  244 LVSTPDTNNDSDVFVRDVQTNTTRLVSVRLDGAAAGNRNSQDPIISGDGRFVAFTSSANDLI---ALDSGPRS--QAFIRDLQNNVTKLVTPNRFGTSG-ANGDIDSQRE-KDMAISTDGRYVAFVSGATDLVANDPG 374          
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Match: A0A8D5Z0I2_9ACTN (Peptidase_S8 domain-containing protein n=1 Tax=Actinoplanes sp. L3-i22 TaxID=2836373 RepID=A0A8D5Z0I2_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 2.380e-8
Identity = 51/143 (35.66%), Postives = 71/143 (49.65%), Query Frame = 1
Query:   55 SVTADGSKLCYTTIEALVPEDDDINQYD-VYVYDWATGTPQLASVGTLGEGGHPNIVTPWISGDGRYVSFTTAQSAIIQPGLAQAGPHGDWQLWTKDLETGLLALVSVDDFGKPGWSPNDIDKARFGAGASLSADGGTLVFTS 480
            SV+ADG+K+ Y++ E ++    D    D V V   ATG   +ASV T G  G  +   P +SGDGRYV+FT+A + +   G   AG + D   + +DL  G   LVS    G             +G    LSADG  ++ TS
Sbjct:  594 SVSADGTKVAYSSAEPVLWGGTDPAITDQVLVATVATGAQTVASVTTAGAPGASSSTGPVLSGDGRYVAFTSAAAGLS--GATPAGNYAD-HAYRRDLTLGTTRLVSARADGTAD---------TWGELLDLSADGRYVLLTS 724          
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Match: A0A7K2TJV3_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces sp. SID8352 TaxID=2690338 RepID=A0A7K2TJV3_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 2.810e-8
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 1
Query:   55 SVTADGSKLCYTTIEALVPEDDDINQYDVYVYDWATGTPQLASVGTLGEGGHPNIVTPWISGDGRYVSFTTAQSAIIQPGLAQAGPHGDWQLWTKDLETGLLALVSVDDFGKPGWSPNDIDKARFGAGASLSADGGTLVFTSTYDSLP 498
            S++ADG  + + + E  + +DD   + DV+V+D  TG    A+ G  G G       P ISGDGRY++F++ +   + PG    G  G   ++  D  TG   L S+ + G     P+          A++S DG  + FT+   SLP
Sbjct:   87 SLSADGRYVAFDSAEPGLVDDDTDTRRDVFVFDRVTGRTVRATSGPDGGG-----FDPAISGDGRYIAFSSTRRLDL-PG----GQRGHQNVFVLDRRTGTTRLASITNKGAVPVHPS--------RAATISDDGQRVAFTARTSSLP 216          
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Match: UPI001F61722A (calcium-binding protein n=1 Tax=Microcoleus vaginatus TaxID=119532 RepID=UPI001F61722A)

HSP 1 Score: 62.4 bits (150), Expect = 3.000e-8
Identity = 43/142 (30.28%), Postives = 71/142 (50.00%), Query Frame = 1
Query:   55 SVTADGSKLCYTTIEALVPEDDDINQYDVYVYDWATGTPQLASVGTLGEGGHPNIVTPWISGDGRYVSFTTAQSAIIQPGLAQAGPHGDWQLWTKDLETGLLALVSVDDFGKPGWSPNDIDKARFGAGASLSADGGTLVFTS 480
            S++ADG  + + +    +   D  N  D++V D +T T    SVG+ G  G+     P ISGDGR+V+F+++ + ++ PG      + +  ++ +DL T    LVSV   G      +D         AS+SA+G  + F S
Sbjct:   92 SISADGRFVAFQSDATNLVPGDTNNNNDIFVRDLSTNTTTRVSVGSAGNQGNDFSGNPSISGDGRFVTFSSSATNLV-PG----DTNNEEDIFVRDLSTNTTTLVSVSSSGDRANDYSDF--------ASISANGRFVAFRS 220          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121212.4372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0RJF9_9CYAN1.280e-1028.57DUF4347 domain-containing protein n=1 Tax=Okeania ... [more]
A0A5C6DHV4_9BACT4.870e-1032.56FG-GAP repeat protein n=1 Tax=Novipirellula aureli... [more]
UPI001BA8DDC77.480e-1029.93PD40 domain-containing protein n=3 Tax=unclassifie... [more]
A0A1F8M5Q0_9CHLR2.630e-931.97Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
UPI0019BAF3A52.690e-928.21Uncharacterized protein n=2 Tax=Deinococcus ruber ... [more]
A0A3N0CAP8_9ACTN1.190e-829.93Uncharacterized protein n=2 Tax=Marmoricola ginsen... [more]
A0A2V2R5Z7_9BACT1.770e-835.51Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A8D5Z0I2_9ACTN2.380e-835.66Peptidase_S8 domain-containing protein n=1 Tax=Act... [more]
A0A7K2TJV3_9ACTN2.810e-831.08Uncharacterized protein n=1 Tax=Streptomyces sp. S... [more]
UPI001F61722A3.000e-830.28calcium-binding protein n=1 Tax=Microcoleus vagina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121212contigM-pyrifera_M_contig121212:18..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog585531.HMPREF0063_10480
KEGG koko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Involved in the tonB-independent uptake of proteins
EggNOG OGs2IC0F@201174,COG0823@1,COG0823@2,COG1404@1,COG1404@2
COG Functional cat.U
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.8521764-CDS-M-pyrifera_M_contig121212:17..5301622815731.8521764-CDS-M-pyrifera_M_contig121212:17..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121212 18..530 -
1692277543.1474354-CDS-M-pyrifera_M_contig121212:17..5301692277543.1474354-CDS-M-pyrifera_M_contig121212:17..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121212 18..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121212.4372.1prot_M-pyrifera_M_contig121212.4372.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121212 18..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121212.4372.1

>prot_M-pyrifera_M_contig121212.4372.1 ID=prot_M-pyrifera_M_contig121212.4372.1|Name=mRNA_M-pyrifera_M_contig121212.4372.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
IASGVTTERVFANLPRFLSVTADGSKLCYTTIEALVPEDDDINQYDVYVY
DWATGTPQLASVGTLGEGGHPNIVTPWISGDGRYVSFTTAQSAIIQPGLA
QAGPHGDWQLWTKDLETGLLALVSVDDFGKPGWSPNDIDKARFGAGASLS
ADGGTLVFTSTYDSLPHNNVG
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mRNA from alignment at M-pyrifera_M_contig121212:18..530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121212.4372.1 ID=mRNA_M-pyrifera_M_contig121212.4372.1|Name=mRNA_M-pyrifera_M_contig121212.4372.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig121212:18..530- (Macrocystis pyrifera P11B4 male)
ATTGCGAGCGGCGTGACGACCGAGCGGGTCTTCGCGAACCTGCCGCGCTT CCTGTCGGTGACGGCGGACGGCAGCAAGCTGTGCTACACGACCATCGAAG CGCTCGTGCCGGAGGACGACGACATCAATCAGTACGACGTGTACGTGTAC GACTGGGCGACCGGGACGCCGCAACTGGCGAGCGTGGGAACGCTGGGCGA AGGCGGGCACCCGAACATCGTCACGCCGTGGATCAGCGGCGACGGACGCT ACGTGTCCTTCACGACCGCGCAGAGCGCGATCATCCAGCCGGGCCTCGCG CAGGCCGGGCCCCACGGCGATTGGCAGCTCTGGACCAAGGACCTAGAGAC GGGGCTGCTCGCGCTCGTGTCGGTGGACGACTTCGGCAAGCCGGGTTGGT CGCCGAACGACATCGACAAGGCGCGCTTCGGAGCCGGCGCATCGCTGAGC GCGGACGGCGGGACGCTGGTCTTCACCAGCACGTACGACTCGCTGCCCCA CAACAATGTCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121212:18..530-

>mRNA_M-pyrifera_M_contig121212.4372.1 ID=mRNA_M-pyrifera_M_contig121212.4372.1|Name=mRNA_M-pyrifera_M_contig121212.4372.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig121212:18..530- (Macrocystis pyrifera P11B4 male)
ATTGCGAGCGGCGTGACGACCGAGCGGGTCTTCGCGAACCTGCCGCGCTT
CCTGTCGGTGACGGCGGACGGCAGCAAGCTGTGCTACACGACCATCGAAG
CGCTCGTGCCGGAGGACGACGACATCAATCAGTACGACGTGTACGTGTAC
GACTGGGCGACCGGGACGCCGCAACTGGCGAGCGTGGGAACGCTGGGCGA
AGGCGGGCACCCGAACATCGTCACGCCGTGGATCAGCGGCGACGGACGCT
ACGTGTCCTTCACGACCGCGCAGAGCGCGATCATCCAGCCGGGCCTCGCG
CAGGCCGGGCCCCACGGCGATTGGCAGCTCTGGACCAAGGACCTAGAGAC
GGGGCTGCTCGCGCTCGTGTCGGTGGACGACTTCGGCAAGCCGGGTTGGT
CGCCGAACGACATCGACAAGGCGCGCTTCGGAGCCGGCGCATCGCTGAGC
GCGGACGGCGGGACGCTGGTCTTCACCAGCACGTACGACTCGCTGCCCCA
CAACAATGTCGGCATTGCGAGCGGCGTGACGACCGAGCGGGTCTTCGCGA
ACCTGCCGCGCTTCCTGTCGGTGACGGCGGACGGCAGCAAGCTGTGCTAC
ACGACCATCGAAGCGCTCGTGCCGGAGGACGACGACATCAATCAGTACGA
CGTGTACGTGTACGACTGGGCGACCGGGACGCCGCAACTGGCGAGCGTGG
GAACGCTGGGCGAAGGCGGGCACCCGAACATCGTCACGCCGTGGATCAGC
GGCGACGGACGCTACGTGTCCTTCACGACCGCGCAGAGCGCGATCATCCA
GCCGGGCCTCGCGCAGGCCGGGCCCCACGGCGATTGGCAGCTCTGGACCA
AGGACCTAGAGACGGGGCTGCTCGCGCTCGTGTCGGTGGACGACTTCGGC
AAGCCGGGTTGGTCGCCGAACGACATCGACAAGGCGCGCTTCGGAGCCGG
CGCATCGCTGAGCGCGGACGGCGGGACGCTGGTCTTCACCAGCACGTACG
ACTCGCTGCCCCACAACAATGTCGGC
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